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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2253#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 760 fasta sequence
[GTTCTCCTTCAATGTAGTCAATAAAGTGACGGATTCTGTCACAGTTCCAACAAAACAATGACAATTTGGGTGAAATTAAAATGACTTCCAGAGCAGGTATGTTGATCAGGATGTTACTTTAACAAAAGTACTGAGGGAAAAAGTAATGGATGCAAAATAAGAGCAATATGCAGAGACTTGATAGCACAAAACTGATAAGTAATTTTTTCCCCCTCTAGGTTGACATAGAGGTCGACTTCATACGGTTCTCACATACCTGACACTCTCCCTGGAATGGAATAACTCTGCATTTCCAATGTTTTCAATAAATGCTTAAAAAAAGAAAAAAAACCCTGTCAGGACCTTCTAACTAAGATCCATTTTCAGTTTTGGGGACCTTTGCTGCAGGCCCATCACCATCTTCAAGTTCTCTCTTGGGGGCTGTAGGGACTTCATCTTCATCATCACTGTGAAATTTAGTCTTTTTGCCCTTGAACTGCGTTCCGACATGATCTCTTCCTCCTCTTCCTCTTCGGCCTCCTCTTCCTCTACCACCTGATCGACCTCTGCCTCTGCCTTTATTCCTTTGCGTTTCCTGCTGAGCTTCAATTATCCTTTTCAGCGCCTCTTTTTCCTCATCTCCTTCCAATAACTGCCAGGAAACACTGCTGACCTTGACCTTCAGTTCTCCTCCATTCGCCTCTTTGGCCTTATCAAATGATTCTTTTGCATTGCAATCAAAAAGCAGGGCACCCTCTTTGGCCCCTCTCGTAAAATCAAC]
[+] EMBL CA588778 [GTTCTCCTTCAATGTAGTCAATAAAGTGACGGATTCTGTCACAGTTCCAACAAAACAATGACAATTTGGGTGAAATTAAAATGACTTCCAGAGCAGGTATGTTGATCAGGATGTTACTTTAACAAAAGTACTGAGGGAAAAAGTAATGGATGCAAAATAAGAGCAATATGCAGAGACTTGATAGCACAAAACTGATAAGTAATTTTTTCCCCCTCTAGGTTGACATAGAGGTCGACTTCATACGGTTCTCACATACCTGACACTCTCCCTGGAATGGAATAACTCTGCATTTCCAATGTTTTCAATAAATGCTTAAAAAAAGAAAAAAAACCCTGTCAGGACCTTCTAACTAAGATCCATTTTCAGTTTTGGGGACCTTTGCTGCAGGCCCATCACCATCTTCAAGTTCTCTCTTGGGGGCTGTAGGCACTTCATCTTCATCATCACTGTCAAATTTAGTCTTTTTGCCCTTGAACTGCGTTCCGCCATGATCTCTTCCTCCTCTTCCTCTTCGGCCTCCTCTTCCTCTACCACCTGATCGTCCTCTGCCTCTGCCTTTATTCCTTTGCGTTTCCTGCTGAGCTTCAATTATCCTTTTCAGCGCCTCTTTTTCCTCATCTCCTTCCAATAACTGCCAGGTAACACTGCTGTCCTTGACCTTCAGTTCTCCTCCATTCGCCTCTTTGGCCTTATCAAATGCTTCTTTTGCATTGCAATCAAAAAGCAGGGCACCCTCTTTGGCCCCTCTCGTAAA ]
[+] EMBL CA588728 [ TTGGGGACCTTTGCTGCAGGCCCATCACCATCTTCAAGTTCTCTCTTGGGGGCTGTAGGGACTTCATCTTCATCATCACTGTGAAATTTAGTCTTTTTGCCCTTGAACTGCGTTCCGACATGATCTCTTCCTCCTCTTCCTCTTCGGCCTCCTCTTCCTCTACCACCTGATCGACCTCTGCCTCTGCCTTTATTCCTTTGCGTTTCCTGCTGAGCTTCAATTATCCTTTTCAGCGCCTCTTTTTCCTCATCTCCTTCCAATAACTGCCAGGAAACACTGCTGACCTTGACCTTCAGTTCTCCTCCATTCCCCTCTTTGGCCTTATCAAATGATTCTTTTGCATTGCAATCAAAAAGCAGGGTACCCTCTTTGGCCCCTCTCGTAAAATCAAC]
consensusID : consensus_2253#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 702 fasta sequence
[ACACAATAAAAAGCATAAGTGATTATTATATAAGAATGAAATTAAAAGAATTGGAGAGTTGCTTACAGCAAGTGGACGTCTTTGAAGAGCCCAAAATTCTCTTTGAGCAATATCCAACCAGTCCTCACATTGCTGGTGATGACCACAGCATGCATGCTCTATACGATCCAGAGTACGTTTGATGATATTAAAGGTAAAGTTGTAGCCGATCTGGGATGTGGCTGTGGAGTCCTAAGCATCGGAGCTGCGATTCATGGTGCGGGATTCTGTGTGGGTTTTGATATTGACGATGACGCCCTTGAAATATTTAGGAGCAGTGCCGAAGAGGTTGAGATTTCTAACGTCGATCTGGTCCAAAGTGACCTCTGCTCTCTGCAGGCAGACGCTTATGCACAAAAGTTTGACACGGTTATTATGAATCCGCCTTTTGGCACAAAGCACAATCAAGGTATGGACATGAAGTTTCTGCGAACAGCTTTAACAATGGACCAGACTGCGGTGTACTCGCTTCATAAGACATCAACTCGAGAACACATACAAGATAAAGCCACTGACTGGGGAGTAAAGATGGAAGTAATAGCAGAGCTCAGATATGATTTACCAGCATCTTACAAGTTCCACAAGGAGAAATCGGTTGACATAGAGGTCGACTTCATACGGTTCTCACATACCTGACACTCTCCCTGGGAATGGATAACTCTG]
[+] EMBL FR0057419 [ACACAATAAAAAGCATAAGTGATTATTATATAAGAATGAAATTAAAAGAATTGGAGAGTTGCTTACAGCAAGTGGACGTCTTTGAAGAGCCCAAAATTCTCTTTGAGCAATATCCAACCAGTCCTCACATTGCTGGTGATGACCACAGCATGCATGCTCTATACGATCCAGAGTACGTTTGATGATATTAAAGGTAAAGTTGTAGCCGATCTGGGATGTGGCTGTGGAGTCCTAAGCATCGGAGCTGCGATTCTTGGTGCGGGCTTCTGTGTGGGTTTTGATATTGACGATGACGCCCTTGAAATCTTTAGGAGCAATGCCGAAGAGGTTGAGATTTCTAACGTCGATCTG ]
[+] EMBL FR0055277 [ GTGGAGTCCTAAGCATCGGAGCTGCGATTCATGGTGCGGGATTCTGTGTGGGTTTTGATATTGACAATGACGCCCTTGAAATATTTAGGAGCAGTGCCGAAGAGTTTGAGATTTCTAACGTCGATCTGGTCCAAAGTGACCTCTGCTCTCTGCAGGCAGACGCTTATGCACAAAAGTTTGACACGGTTATTATGAATCCGCCTTTTGGCACAAAGCACAATCAAGGTATGGACATGAAGTTTCTGCGAACAGCTTTAACAATGGACCAGACTGCGGTGTACTCGCTTCATAAGACATCAACTCGAGAACACATACAAGATAAAGCCACTGACTGGGGAGTAAAGATGGAAGTAATAGCAGAGCTCAGATATGATTTACCAGCATCTTACAAGTTCCACAAGGAGAAATCGGTTGACATAGAGGTCGACTTCATACGGTTCTCACATACCTGACACTCTCCCTGGGAATGGATAACTCTG]
consensusID : consensus_2253#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence
[TGTCACACAATAAAAAGCATAAGTGATTATTATATAAGAATGAAATTAAGAGAATTGGAGAGTTGCTTACAGCAAGTGGACGTCTTTGAAGAGCCCAAAATTCTCTTTGAGCAATATCCAACCAGTCCTCACATTGCTGCATGCATGCTCTATACGATCCAGAGTACGTTTGATGATATTAAAGGTAAAGTTGTACCCGATCTGGGATGTGGCTGTGGAGTCCTAAGCATCGGAGCTGCGATTCTTGGTGCGGGCTTCTGTGTGGGTTTTGATATTGACAATGACGCCCTTGAAATATTTAGGAGCAATGCCGAAGAGTTTGAGATTTCTAACGTCGATCTGGTCCAAAGTGACCTCTGCTCTCTGCAGCCAGACGCTTATGCACAAAAGTTTGACACGGTTATTATGAATCCGCCTTTTGGTACAAAGCACAATCAAGGTATGGACATGAAGTTTCTGCGAACAGCTTTAACAATGGCCCAGACTGCGGTGTACT]
[+] EMBL FR0055246 [TGTCACACAATAAAAAGCATAAGTGATTATTATATAAGAATGAAATTAAGAGAATTGGAGAGTTGCTTACAGCAAGTGGACGTCTTTGAAGAGCCCAAAATTCTCTTTGAGCAATATCCAACCAGTCCTCACATTGCTGCATGCATGCTCTATACGATCCAGAGTACGTTTGATGATATTAAAGGTAAAGTTGTACCCGATCTGGGATGTGGCTGTGGAGTCCTAAGCATCGGAGCTGCGATTCTTGGTGCGGGCTTCTGTGTGGGTTTTGATATTGACAATGACGCCCTTGAAATATTTAGGAGCAATGCCGAAGAGTTTGAGATTTCTAACGTCGATCTGGTCCAAAGTGACCTCTGCTCTCTGCAGCCAGACGCTTATGCACAAAAGTTTGACACGGTTATTATGAATCCGCCTTTTGGTACAAAGCACAATCAAGGTATGGACATGAAGTTTCTGCGAACAGCTTTAACAATGGCCCAGACTGCGGTGTACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2253#1 ------ACACAATAAAAAGCATAA-GTGATT-ATTATATAAGAATGAAATTAAAAGAATT 52
consensus_2253#2 --TGTCACACAATAAAAAGCATAA-GTGATT-ATTATATAAGAATGAAATTAAGAGAATT 56
consensus_2253#0 GTTCTCCTTCAATGTAGTCAATAAAGTGACGGATTCTGTCACAGTTCCAACAAAACAATG 60
**** * **** **** *** * * * * * * ** * ***
consensus_2253#1 GGAGAGTTGCTTACAGCAAGTGGACGTCTTTGAAGAGCCCAAAATTCTCTTTGAGCAATA 112
consensus_2253#2 GGAGAGTTGCTTACAGCAAGTGGACGTCTTTGAAGAGCCCAAAATTCTCTTTGAGCAATA 116
consensus_2253#0 ACAATTTGGGTGAAATTAAAATGACTTCC----AGAGCAGGTATGTTGATCAGGATGTTA 116
* * * * * * ** *** ** ***** * * * * **
consensus_2253#1 TCCAACCA---GTCCTCACATTGCTGGTGATGACCACAGCATGCATGCTCTATACGATCC 169
consensus_2253#2 TCCAACCA---GTCCTCACATTGCTG-------------CATGCATGCTCTATACGATCC 160
consensus_2253#0 CTTTAACAAAAGTACTGAGGGAAAAAGTAATGGATGCAAAATAAGAGCAATATGCAG--- 173
* ** ** ** * ** ** *** *
consensus_2253#1 AGAGTACGTTTGATGATATTAAAGGTAAAGTTGTAGCCGATCTGGGATGTGGCTGTGGAG 229
consensus_2253#2 AGAGTACGTTTGATGATATTAAAGGTAAAGTTGTACCCGATCTGGGATGTGGCTGTGGAG 220
consensus_2253#0 AGACTTGATAGCACAAAACTGATAAGTAATTTTTTCCCCCTCTAGGTTGACATAGAGGTC 233
*** * * * * * * * ** ** * ** *** ** ** * **
consensus_2253#1 TCCTAAGCATCGGAGCTGCGATTCATGGTGCGGGATTCTGTGTGGGTT---TTGATATTG 286
consensus_2253#2 TCCTAAGCATCGGAGCTGCGATTCTTGGTGCGGGCTTCTGTGTGGGTT---TTGATATTG 277
consensus_2253#0 GACTTCATA-CGGTTCTCACATACCTGACACTCTCCCTGGAATGGAATAACTCTGCATTT 292
** * *** ** ** * ** * * *** * * ***
consensus_2253#1 ACGATGACGCCCTTGAAATATTTAGGAGCAGTGCCGAAGA---GGTTGAGATTTCTAACG 343
consensus_2253#2 ACAATGACGCCCTTGAAATATTTAGGAGCAATGCCGAAGA---GTTTGAGATTTCTAACG 334
consensus_2253#0 CCAATGTTTTCAAT-AAATGCTTAAAAAAAGAAAAAAAACCCTGTCAGGACCTTCTAACT 351
* *** * * **** *** * * ** * * *******
consensus_2253#1 TCGATCTGGTCCAAAGTGACCTCTGCTCT-CTGCAGGCAGACGCTTATGCACAAAAGTTT 402
consensus_2253#2 TCGATCTGGTCCAAAGTGACCTCTGCTCT-CTGCAGCCAGACGCTTATGCACAAAAGTTT 393
consensus_2253#0 AAGATCCATTTTCAGTTTTGGGGACCTTTGCTGCAGGCCCATCACCATCTTCAAGTTCTC 411
**** * * * ** * ****** * * ** *** *
consensus_2253#1 GAC--ACGGTTATTATGAATCCGCCTTTTGGCACAAAGCACAATCAAGG---TATGGACA 457
consensus_2253#2 GAC--ACGGTTATTATGAATCCGCCTTTTGGTACAAAGCACAATCAAGG---TATGGACA 448
consensus_2253#0 TCTTGGGGGCTGTAGGGACTTCATCTTCATCATCACTGTGAAATTTAGTCTTTTTGCCCT 471
** * * ** * * *** ** * *** ** * ** *
consensus_2253#1 TGAAGTTTCTGCGAACAGCTTTAACAATGGACCAGACTGCGGTGTACTCGCTTCATAAGA 517
consensus_2253#2 TGAAGTTTCTGCGAACAGCTTTAACAATGGCCCAGACTGCGGTGTACT------------ 496
consensus_2253#0 TGAACTGCGTTCCGACATGATCTCTTCCTCCTCTTCCTCTTCGGCCTCCTCTTCCTCTAC 531
**** * * * *** * * ** *
consensus_2253#1 CATCAACTCGAGAAC-ACATACAAGATAAAGCCACTGACTGGGGAGTAAAGATGGAAGTA 576
consensus_2253#2 ------------------------------------------------------------
consensus_2253#0 CACCTGATCGACCTCTGCCTCTGCCTTTATTCCTTTGCGTTTCCTGCTGAGCTTCAA-TT 590
consensus_2253#1 ATAGCAGAGCTCAGATATGATTTACCAGCATCTTACAAGTTCCACAAGGAGAAATCGGT- 635
consensus_2253#2 ------------------------------------------------------------
consensus_2253#0 ATCCTTTTCAGCGCCTCTTTTTCCTCATCTCCTTCCAATAACTGCCAGGAAACACTGCTG 650
consensus_2253#1 ----TGACATAGAGGTCGACTTCATACGGTTCTCA---CATACCTGACACTCTCCCTGGG 688
consensus_2253#2 ------------------------------------------------------------
consensus_2253#0 ACCTTGACCTTCAGTTCTCCTCCATTCGCCTCTTTGGCCTTATCAAATGATTCTTTTGCA 710
consensus_2253#1 AATGGATAACTCTG------------------------------------ 702
consensus_2253#2 --------------------------------------------------
consensus_2253#0 TTGCAATCAAAAAGCAGGGCACCCTCTTTGGCCCCTCTCGTAAAATCAAC 760
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |