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Takifugu rubripes
cluster # 2255 cluster # 2255       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2255#0 length = 942 sequences # 4  
 consensus_2255#1 length = 153 sequences # 1  
consensusID : consensus_2255#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 942
fasta sequence 
                              [CTCGTAGCCATGCTGGTGTTCTCCTGGGCTCTGTTGACCCTGTCCCTGGTCCTGTGTGCCAAGGCTGAGGAAGAGGTGGGCGTGAAGGACGAGACGTCCAGGGAGCTTTCTGTTGGAGAGCTGCTGGAGAGGGCCAACAGAGACCGCAGTCCTGGTGTAGATGAGCCTCCCTTGGCGGAGGGAGACATCGCTGTGAGGACAGACAACAAGAATGCTG-ACCCGTGCACGTCCAGAGGCTGCCTGTGGAACAAGTGGACTGATGGGAAGGTCTACATACCGTACTACATCGCCAATCACTACTCCTCCCGGGAGAGGGACATCATTGTCCGTGGGCTGGAATCGTTCTCTGGGGTTTCTTGCATCCGCTTCAGGCCCTACCAGAACGGAGACTACGAGTGGCTGAGCATCGAGTCGGGGGACGGCTGCTGGTCCTACGTGGGCCGTCAGGGTGGTAGTCAGACGGTGTCTCTGAGCCGTCAGGGGTGCCTCTACCACGGCACCGTGCAGCACGAGCTCCTGCACGCTCTGGGCTTCAACCACGAACAGACGCGCTCCGACAGGGACAGTCACATCCAGGTGGTCTGGGACAACATCATTCAAGACATGAAGTACAACTTCAACAAGATTGCCACTCTGAACCAGGGGACTTCCTACGACTACGGGTCTGTGATGCAGTACCACAGGTACGCCTTCTCCAAAAACGGCCTCCCGGCCATGGTGGCCATCCCCAACAACAACGTTTCCTTTGGCGAGGTCACCCAGATGAGCAGGAACGACATCGACCGCCTGAACAGGCTGTACAAGTGCTGAAGCCCGTTGGACCTGGAACCCGCCTCCAGAAGCCGCCTCCAGAGCACACAGAAGGCCGAGGACGTTGGGCCCCGACGTCCAGACCATAGACCTTCAGAGTGTTGACACCTGATTTTGTGTCTTCATTTTCTT]

[+] EMBL CA330957             [CTCGTAGCCATGCTGGTGTTCTCCTGGGCTCTGTTGACCCTGTCCCTGGTCCTGTGTGCCAAGGCTGAGGAAGAGGTGGGCGTGAAGGACGAGACGTCCAGGGAGCTTTCTGTTGGAGAGCTGCTGGAGAGGGCCAACAGAGACCGCAGTCCTGGTGTAGATGAGCCTCCCTTGGCGGAGGGAGACATCGCTGTGAGGACAGACAACAAGAATGCTG ACCCGTGCACGTCCAGAGGCTGCCTGTGGAACAAGTGGACTGATGGGAAGGTCTACATACCGTACTACATCGCCAATCACTACTCCTCCCGGGAGAGGGACATCATTGTCCGTGGGCTGGAATCGTTCTCTGGGGTTTCTTGCATCCGCTTCAGGCCCTACCAGAACGGAGACTACGAGTGGCTGAGCATCGAGTCGGGGGACGGCTGCTGGTCCTACGTGGGCCGTCAGGGTGGTAGTCAGACGGTGTCTCTGAGCCGTCAGGGGTGCCTCTACCACGGCACCGTGCAGCACGAGCTCCTGCACGCTCTGGGCTTCAACCACGAACAGACGCGCTCCGACAGGGACAGTCACATCCAGGTGGTCTGGGACAACATCATTCAAGACATGAAGTACAACTTCAACAAGATTGCC                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA845729             [     AGCCATGCTGGTGTTCTCCTGGGCTCTGTTGACCTTGTCCCTGGTCCTGTGTGCCAAGGCTGAGGAAGAGGTGGGCGTGAAGGACGAGACGTCCAGGGAGCTTTCTGTTGGAGAGCTGCTGGAGAGGGCCAACAGAGACCGCAGTCCTGGTGTAGATGAGCCTCCCTTGGCGGAGGGAGACATCGCTGTGAGGACAGACAACAAGAATGCTG ACCCGTGCACGTCCAGAGGCTGCCTGTGGAACAAGTGGACTGATGGGAAGGTCTACATACCGTACTACATCGCCAATCACTACTCCTCCCGGGAGAGGAACATCATTGTCCGTGGGCTGGAATCGTTCTCTGGGGTTTCTTGCATCCGCTTCAGGCCCTACCAGAACGGAGACTACGAGTGGCTGAGCATCGAGTCGGGGGACGGCTGCTGGTCCTACGTGGGCCGTCAGGGTGGTAGTCAGACGGTGTCTCTGAGCCGTCAGGGGTGCCTCTACCACGGCACCGTGCAGCACGAGCTCCTGCACGCTCTGGGCTTCAACCACGAACAGACGCGCTCCGACAGGGACAGTCACATCCAGGTGGTCTGGGACAACATCATTCAAGACATGAAGTACAACTTCAACAAGATTGCCACTCTGAACCAGGGGACTTCCTACGACTACGGGTCTGTGATGCAGTACCACAGG                                                                                                                                                                                                                                                                  ]
[+] EMBL CA333571             [     AGCCATGCTGGTGTTCTCCTGGGCTCTGTTGACCCTGTCCCTGGTCCTGTGTGCCAAGGCTGATGAAGAGGTGGGCGTGAATGACTAGACGTCCAGGGAGCTTTCTGTTGGAGAGCTGCTGGAGAGGGCCAACAGAGACCGCAGTCCTGGTGTAGATGAGCCTCCCTTGGCGGAGGGAGACATCGCTGTGAGGACAGACAACAAGAATGCTGTACCCGTGCACGTCCAGAGGCTGCCTGTGGAACAAGTGGACTGATGGGAAGGTCTACATACCGTACTACATCGCCAATCACTACTCCTCCCGGGAGAGGGACATCATTGTCCGTGGGCTGGAATCGTTCTCTGGGGTTTCTTGCATCCGCTTCAGGCCCTACCAGAACGGAGACTACGAGTGGCTGAGCATCGAGTCGGGGGACGGCTGCTGGTCCTACGTGGGCCGTCAGGGTGGTGGTCAGACGGTGTCTCTGAGCCGTCAGGGGTGTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL FR0057815            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTGGAACAACATCATTCAAGACATGAAGTACAACTTCAACAAGATTGCCACTCTGAACCAGGGGACTTCCTACGACTACGGCTCTGTGATGCAGTACCACAGGTACGCCTTCTCCAAAAACGGCCTCCCGGCCATGGTGGCCATCCCCAACAACAACGTTTCCTTTGGCGAGGTCACCCAGATGAGCAGGAACGACATCGACCGCCTGAACAGGCTGTACAAGTGCTGAAGCCCGTTGGACCTGGAACCCGCCTCCAGAAGCCGCCTCCAGAGCACACAGAAGGCCGAGGACGTTGGGCCCCGACGTCCAGACCATAGACCTTCAGAGTGTTGACACCTGATTTTGTGTCTTCATTTTCTT]




>consensus_2255#0
CTCGTAGCCATGCTGGTGTTCTCCTGGGCTCTGTTGACCCTGTCCCTGGTCCTGTGTGCC
AAGGCTGAGGAAGAGGTGGGCGTGAAGGACGAGACGTCCAGGGAGCTTTCTGTTGGAGAG
CTGCTGGAGAGGGCCAACAGAGACCGCAGTCCTGGTGTAGATGAGCCTCCCTTGGCGGAG
GGAGACATCGCTGTGAGGACAGACAACAAGAATGCTGACCCGTGCACGTCCAGAGGCTGC
CTGTGGAACAAGTGGACTGATGGGAAGGTCTACATACCGTACTACATCGCCAATCACTAC
TCCTCCCGGGAGAGGGACATCATTGTCCGTGGGCTGGAATCGTTCTCTGGGGTTTCTTGC
ATCCGCTTCAGGCCCTACCAGAACGGAGACTACGAGTGGCTGAGCATCGAGTCGGGGGAC
GGCTGCTGGTCCTACGTGGGCCGTCAGGGTGGTAGTCAGACGGTGTCTCTGAGCCGTCAG
GGGTGCCTCTACCACGGCACCGTGCAGCACGAGCTCCTGCACGCTCTGGGCTTCAACCAC
GAACAGACGCGCTCCGACAGGGACAGTCACATCCAGGTGGTCTGGGACAACATCATTCAA
GACATGAAGTACAACTTCAACAAGATTGCCACTCTGAACCAGGGGACTTCCTACGACTAC
GGGTCTGTGATGCAGTACCACAGGTACGCCTTCTCCAAAAACGGCCTCCCGGCCATGGTG
GCCATCCCCAACAACAACGTTTCCTTTGGCGAGGTCACCCAGATGAGCAGGAACGACATC
GACCGCCTGAACAGGCTGTACAAGTGCTGAAGCCCGTTGGACCTGGAACCCGCCTCCAGA
AGCCGCCTCCAGAGCACACAGAAGGCCGAGGACGTTGGGCCCCGACGTCCAGACCATAGA
CCTTCAGAGTGTTGACACCTGATTTTGTGTCTTCATTTTCTT

consensusID : consensus_2255#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 153
fasta sequence 
                              [TACAAGTGCTGAAGCCCGTTGGACCTGGAACCCGCCTCCAGAACCCGCCTCCAGAACACACAGAAGGACGAGGACGTTGGGCCCCGACGTCCAAACCACAAACCTTCAAAGTGTTAAAACCTGATTTTGGATTGATCAATAAAGAAAATGAAG]

[+] EMBL CA330085             [TACAAGTGCTGAAGCCCGTTGGACCTGGAACCCGCCTCCAGAACCCGCCTCCAGAACACACAGAAGGACGAGGACGTTGGGCCCCGACGTCCAAACCACAAACCTTCAAAGTGTTAAAACCTGATTTTGGATTGATCAATAAAGAAAATGAAG]




>consensus_2255#1
TACAAGTGCTGAAGCCCGTTGGACCTGGAACCCGCCTCCAGAACCCGCCTCCAGAACACA
CAGAAGGACGAGGACGTTGGGCCCCGACGTCCAAACCACAAACCTTCAAAGTGTTAAAAC
CTGATTTTGGATTGATCAATAAAGAAAATGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2255#0      CTCGTAGCCATGCTGGTGTTCTCCTGGGCTCTGTTGACCCTGTCCCTGGTCCTGTGTGCC 60
consensus_2255#1      ------------------------------------------------------------
                                                                                  

consensus_2255#0      AAGGCTGAGGAAGAGGTGGGCGTGAAGGACGAGACGTCCAGGGAGCTTTCTGTTGGAGAG 120
consensus_2255#1      ------------------------------------------------------------
                                                                                  

consensus_2255#0      CTGCTGGAGAGGGCCAACAGAGACCGCAGTCCTGGTGTAGATGAGCCTCCCTTGGCGGAG 180
consensus_2255#1      ------------------------------------------------------------
                                                                                  

consensus_2255#0      GGAGACATCGCTGTGAGGACAGACAACAAGAATGCTGACCCGTGCACGTCCAGAGGCTGC 240
consensus_2255#1      ------------------------------------------------------------
                                                                                  

consensus_2255#0      CTGTGGAACAAGTGGACTGATGGGAAGGTCTACATACCGTACTACATCGCCAATCACTAC 300
consensus_2255#1      ------------------------------------------------------------
                                                                                  

consensus_2255#0      TCCTCCCGGGAGAGGGACATCATTGTCCGTGGGCTGGAATCGTTCTCTGGGGTTTCTTGC 360
consensus_2255#1      ------------------------------------------------------------
                                                                                  

consensus_2255#0      ATCCGCTTCAGGCCCTACCAGAACGGAGACTACGAGTGGCTGAGCATCGAGTCGGGGGAC 420
consensus_2255#1      ------------------------------------------------------------
                                                                                  

consensus_2255#0      GGCTGCTGGTCCTACGTGGGCCGTCAGGGTGGTAGTCAGACGGTGTCTCTGAGCCGTCAG 480
consensus_2255#1      ------------------------------------------------------------
                                                                                  

consensus_2255#0      GGGTGCCTCTACCACGGCACCGTGCAGCACGAGCTCCTGCACGCTCTGGGCTTCAACCAC 540
consensus_2255#1      ------------------------------------------------------------
                                                                                  

consensus_2255#0      GAACAGACGCGCTCCGACAGGGACAGTCACATCCAGGTGGTCTGGGACAACATCATTCAA 600
consensus_2255#1      ------------------------------------------------------------
                                                                                  

consensus_2255#0      GACATGAAGTACAACTTCAACAAGATTGCCACTCTGAACCAGGGGACTTCCTACGACTAC 660
consensus_2255#1      ------------------------------------------------------------
                                                                                  

consensus_2255#0      GGGTCTGTGATGCAGTACCACAGGTACGCCTTCTCCAAAAACGGCCTCCCGGCCATGGTG 720
consensus_2255#1      ------------------------------------------------------------
                                                                                  

consensus_2255#0      GCCATCCCCAACAACAACGTTTCCTTTGGCGAGGTCACCCAGATGAGCAGGAACGACATC 780
consensus_2255#1      ------------------------------------------------------------
                                                                                  

consensus_2255#0      GACCGCCTGAACAGGCTGTACAAGTGCTGAAGCCCGTTGGACCTGGAACCCGCCTCCAGA 840
consensus_2255#1      ------------------TACAAGTGCTGAAGCCCGTTGGACCTGGAACCCGCCTCCAGA 42
                                        ******************************************

consensus_2255#0      AGCCGCCTCCAGAGCACACAGAAGGCCGAGGACGTTGGGCCCCGACGTCCAGACCATAGA 900
consensus_2255#1      ACCCGCCTCCAGAACACACAGAAGGACGAGGACGTTGGGCCCCGACGTCCAAACCACAAA 102
                      * *********** *********** ************************* **** * *

consensus_2255#0      CCTTCAGAGTGTTGACACCTGATTTTGTGTCT-TCATTTTCTT-------- 942
consensus_2255#1      CCTTCAAAGTGTTAAAACCTGATTTTGGATTGATCAATAAAGAAAATGAAG 153
                      ****** ****** * ***********  *   *** *


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)