These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 942 fasta sequence [CTCGTAGCCATGCTGGTGTTCTCCTGGGCTCTGTTGACCCTGTCCCTGGTCCTGTGTGCCAAGGCTGAGGAAGAGGTGGGCGTGAAGGACGAGACGTCCAGGGAGCTTTCTGTTGGAGAGCTGCTGGAGAGGGCCAACAGAGACCGCAGTCCTGGTGTAGATGAGCCTCCCTTGGCGGAGGGAGACATCGCTGTGAGGACAGACAACAAGAATGCTG-ACCCGTGCACGTCCAGAGGCTGCCTGTGGAACAAGTGGACTGATGGGAAGGTCTACATACCGTACTACATCGCCAATCACTACTCCTCCCGGGAGAGGGACATCATTGTCCGTGGGCTGGAATCGTTCTCTGGGGTTTCTTGCATCCGCTTCAGGCCCTACCAGAACGGAGACTACGAGTGGCTGAGCATCGAGTCGGGGGACGGCTGCTGGTCCTACGTGGGCCGTCAGGGTGGTAGTCAGACGGTGTCTCTGAGCCGTCAGGGGTGCCTCTACCACGGCACCGTGCAGCACGAGCTCCTGCACGCTCTGGGCTTCAACCACGAACAGACGCGCTCCGACAGGGACAGTCACATCCAGGTGGTCTGGGACAACATCATTCAAGACATGAAGTACAACTTCAACAAGATTGCCACTCTGAACCAGGGGACTTCCTACGACTACGGGTCTGTGATGCAGTACCACAGGTACGCCTTCTCCAAAAACGGCCTCCCGGCCATGGTGGCCATCCCCAACAACAACGTTTCCTTTGGCGAGGTCACCCAGATGAGCAGGAACGACATCGACCGCCTGAACAGGCTGTACAAGTGCTGAAGCCCGTTGGACCTGGAACCCGCCTCCAGAAGCCGCCTCCAGAGCACACAGAAGGCCGAGGACGTTGGGCCCCGACGTCCAGACCATAGACCTTCAGAGTGTTGACACCTGATTTTGTGTCTTCATTTTCTT] [+] EMBL CA330957 [CTCGTAGCCATGCTGGTGTTCTCCTGGGCTCTGTTGACCCTGTCCCTGGTCCTGTGTGCCAAGGCTGAGGAAGAGGTGGGCGTGAAGGACGAGACGTCCAGGGAGCTTTCTGTTGGAGAGCTGCTGGAGAGGGCCAACAGAGACCGCAGTCCTGGTGTAGATGAGCCTCCCTTGGCGGAGGGAGACATCGCTGTGAGGACAGACAACAAGAATGCTG ACCCGTGCACGTCCAGAGGCTGCCTGTGGAACAAGTGGACTGATGGGAAGGTCTACATACCGTACTACATCGCCAATCACTACTCCTCCCGGGAGAGGGACATCATTGTCCGTGGGCTGGAATCGTTCTCTGGGGTTTCTTGCATCCGCTTCAGGCCCTACCAGAACGGAGACTACGAGTGGCTGAGCATCGAGTCGGGGGACGGCTGCTGGTCCTACGTGGGCCGTCAGGGTGGTAGTCAGACGGTGTCTCTGAGCCGTCAGGGGTGCCTCTACCACGGCACCGTGCAGCACGAGCTCCTGCACGCTCTGGGCTTCAACCACGAACAGACGCGCTCCGACAGGGACAGTCACATCCAGGTGGTCTGGGACAACATCATTCAAGACATGAAGTACAACTTCAACAAGATTGCC ] [+] EMBL CA845729 [ AGCCATGCTGGTGTTCTCCTGGGCTCTGTTGACCTTGTCCCTGGTCCTGTGTGCCAAGGCTGAGGAAGAGGTGGGCGTGAAGGACGAGACGTCCAGGGAGCTTTCTGTTGGAGAGCTGCTGGAGAGGGCCAACAGAGACCGCAGTCCTGGTGTAGATGAGCCTCCCTTGGCGGAGGGAGACATCGCTGTGAGGACAGACAACAAGAATGCTG ACCCGTGCACGTCCAGAGGCTGCCTGTGGAACAAGTGGACTGATGGGAAGGTCTACATACCGTACTACATCGCCAATCACTACTCCTCCCGGGAGAGGAACATCATTGTCCGTGGGCTGGAATCGTTCTCTGGGGTTTCTTGCATCCGCTTCAGGCCCTACCAGAACGGAGACTACGAGTGGCTGAGCATCGAGTCGGGGGACGGCTGCTGGTCCTACGTGGGCCGTCAGGGTGGTAGTCAGACGGTGTCTCTGAGCCGTCAGGGGTGCCTCTACCACGGCACCGTGCAGCACGAGCTCCTGCACGCTCTGGGCTTCAACCACGAACAGACGCGCTCCGACAGGGACAGTCACATCCAGGTGGTCTGGGACAACATCATTCAAGACATGAAGTACAACTTCAACAAGATTGCCACTCTGAACCAGGGGACTTCCTACGACTACGGGTCTGTGATGCAGTACCACAGG ] [+] EMBL CA333571 [ AGCCATGCTGGTGTTCTCCTGGGCTCTGTTGACCCTGTCCCTGGTCCTGTGTGCCAAGGCTGATGAAGAGGTGGGCGTGAATGACTAGACGTCCAGGGAGCTTTCTGTTGGAGAGCTGCTGGAGAGGGCCAACAGAGACCGCAGTCCTGGTGTAGATGAGCCTCCCTTGGCGGAGGGAGACATCGCTGTGAGGACAGACAACAAGAATGCTGTACCCGTGCACGTCCAGAGGCTGCCTGTGGAACAAGTGGACTGATGGGAAGGTCTACATACCGTACTACATCGCCAATCACTACTCCTCCCGGGAGAGGGACATCATTGTCCGTGGGCTGGAATCGTTCTCTGGGGTTTCTTGCATCCGCTTCAGGCCCTACCAGAACGGAGACTACGAGTGGCTGAGCATCGAGTCGGGGGACGGCTGCTGGTCCTACGTGGGCCGTCAGGGTGGTGGTCAGACGGTGTCTCTGAGCCGTCAGGGGTGTCTC ] [+] EMBL FR0057815 [ CTGGAACAACATCATTCAAGACATGAAGTACAACTTCAACAAGATTGCCACTCTGAACCAGGGGACTTCCTACGACTACGGCTCTGTGATGCAGTACCACAGGTACGCCTTCTCCAAAAACGGCCTCCCGGCCATGGTGGCCATCCCCAACAACAACGTTTCCTTTGGCGAGGTCACCCAGATGAGCAGGAACGACATCGACCGCCTGAACAGGCTGTACAAGTGCTGAAGCCCGTTGGACCTGGAACCCGCCTCCAGAAGCCGCCTCCAGAGCACACAGAAGGCCGAGGACGTTGGGCCCCGACGTCCAGACCATAGACCTTCAGAGTGTTGACACCTGATTTTGTGTCTTCATTTTCTT] consensusID : consensus_2255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 153 fasta sequence [TACAAGTGCTGAAGCCCGTTGGACCTGGAACCCGCCTCCAGAACCCGCCTCCAGAACACACAGAAGGACGAGGACGTTGGGCCCCGACGTCCAAACCACAAACCTTCAAAGTGTTAAAACCTGATTTTGGATTGATCAATAAAGAAAATGAAG] [+] EMBL CA330085 [TACAAGTGCTGAAGCCCGTTGGACCTGGAACCCGCCTCCAGAACCCGCCTCCAGAACACACAGAAGGACGAGGACGTTGGGCCCCGACGTCCAAACCACAAACCTTCAAAGTGTTAAAACCTGATTTTGGATTGATCAATAAAGAAAATGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2255#0 CTCGTAGCCATGCTGGTGTTCTCCTGGGCTCTGTTGACCCTGTCCCTGGTCCTGTGTGCC 60 consensus_2255#1 ------------------------------------------------------------ consensus_2255#0 AAGGCTGAGGAAGAGGTGGGCGTGAAGGACGAGACGTCCAGGGAGCTTTCTGTTGGAGAG 120 consensus_2255#1 ------------------------------------------------------------ consensus_2255#0 CTGCTGGAGAGGGCCAACAGAGACCGCAGTCCTGGTGTAGATGAGCCTCCCTTGGCGGAG 180 consensus_2255#1 ------------------------------------------------------------ consensus_2255#0 GGAGACATCGCTGTGAGGACAGACAACAAGAATGCTGACCCGTGCACGTCCAGAGGCTGC 240 consensus_2255#1 ------------------------------------------------------------ consensus_2255#0 CTGTGGAACAAGTGGACTGATGGGAAGGTCTACATACCGTACTACATCGCCAATCACTAC 300 consensus_2255#1 ------------------------------------------------------------ consensus_2255#0 TCCTCCCGGGAGAGGGACATCATTGTCCGTGGGCTGGAATCGTTCTCTGGGGTTTCTTGC 360 consensus_2255#1 ------------------------------------------------------------ consensus_2255#0 ATCCGCTTCAGGCCCTACCAGAACGGAGACTACGAGTGGCTGAGCATCGAGTCGGGGGAC 420 consensus_2255#1 ------------------------------------------------------------ consensus_2255#0 GGCTGCTGGTCCTACGTGGGCCGTCAGGGTGGTAGTCAGACGGTGTCTCTGAGCCGTCAG 480 consensus_2255#1 ------------------------------------------------------------ consensus_2255#0 GGGTGCCTCTACCACGGCACCGTGCAGCACGAGCTCCTGCACGCTCTGGGCTTCAACCAC 540 consensus_2255#1 ------------------------------------------------------------ consensus_2255#0 GAACAGACGCGCTCCGACAGGGACAGTCACATCCAGGTGGTCTGGGACAACATCATTCAA 600 consensus_2255#1 ------------------------------------------------------------ consensus_2255#0 GACATGAAGTACAACTTCAACAAGATTGCCACTCTGAACCAGGGGACTTCCTACGACTAC 660 consensus_2255#1 ------------------------------------------------------------ consensus_2255#0 GGGTCTGTGATGCAGTACCACAGGTACGCCTTCTCCAAAAACGGCCTCCCGGCCATGGTG 720 consensus_2255#1 ------------------------------------------------------------ consensus_2255#0 GCCATCCCCAACAACAACGTTTCCTTTGGCGAGGTCACCCAGATGAGCAGGAACGACATC 780 consensus_2255#1 ------------------------------------------------------------ consensus_2255#0 GACCGCCTGAACAGGCTGTACAAGTGCTGAAGCCCGTTGGACCTGGAACCCGCCTCCAGA 840 consensus_2255#1 ------------------TACAAGTGCTGAAGCCCGTTGGACCTGGAACCCGCCTCCAGA 42 ****************************************** consensus_2255#0 AGCCGCCTCCAGAGCACACAGAAGGCCGAGGACGTTGGGCCCCGACGTCCAGACCATAGA 900 consensus_2255#1 ACCCGCCTCCAGAACACACAGAAGGACGAGGACGTTGGGCCCCGACGTCCAAACCACAAA 102 * *********** *********** ************************* **** * * consensus_2255#0 CCTTCAGAGTGTTGACACCTGATTTTGTGTCT-TCATTTTCTT-------- 942 consensus_2255#1 CCTTCAAAGTGTTAAAACCTGATTTTGGATTGATCAATAAAGAAAATGAAG 153 ****** ****** * *********** * *** * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |