These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [TTGATGTGGCATTCTGAGCAGACTATAAAATACATCAATTAATCAATCAATTAGATTTCTGACCCACAGTGAGAATTTAAAAGTTACCTTATTCTGAATTTTATCAACTTTATTGACAAGAATGTTGTGTGGGGCTGTATGCAACTGATGGATTTCCCTTGATTGCATCAAATCCATATCATAAAATGAAAGTAAGATTGACTCTGCTGAATATACACAAATAACTGCTCTATGTAATATCTTCTAGTGCTGCGGGGATGCTTTTAAGGCCTGCTTTGTCTCCAGGAAGGCTGCAGCTCCTCTGTTTTAATGACCATTAAACCTTTATGTGAAAATGCGATAAATACAATAAGCTGTTTTGCACCAGCCTGCGGTCGACAATGGCCCAGTAGTCGGGCAAAGGTTTCCGTCTCTTTTCCATTTTGTTGTAGATTCTCTTGCTCTCTTTTAATGGTGCACGACAGGAATGTTTGCAGTGTCTCACTTTGTCACGGTGAGCTGAAGCGTCGTGATTGACCATTTTGTCTGCGTCTTTGCTCGCAGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTG] [+] EMBL CA847127 [TTGATGTGGCATTCTGAGCAGACTATAAAATACATCAATTAATCAATCAATTAGATTTCTGACCCACAGTGAGAATTTAAAAGTTACCTTATTCTGAATTTTATCAACTTTATTGACAAGAATGTTGTGTGGGGCTGTATGCAACTGATGGATTTCCCTTGATTGCATCAAATCCATATCATAAAATGAAAGTAAGATTGACTCTGCTGAATATACACAAATAACTGCTCTATGTAATATCTTCTAGTGCTGCGGGGATGCTTTTAAGGCCTGCTTTGTCTCCAGGAAGGCTGCAGCTCCTCTGTTTTAATGACCATTAAACCTTTATGTGAAAATGCGATAAATACAATAAGCTGTTTTGCACCAGCCTGCGGTCGACAATGGCCCAGTAGTCGGGCAAAGGTTTCCGTCTCTTTTCCATTTTGTTGTAGATTCTCTTGCTCTCTTTTAATGGTGCACGACAGGAATGTTTGCAGTGTCTCACTTTGTCACGGTGAGCTGAAGCGTCGTGATTGACCATTTTGTCTGCGTCTTTGCTCGCAGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTG] consensusID : consensus_2257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 565 fasta sequence [CTCCTTTGCTCCGTGACATCTGTCGCTCGATTGAGCTTCATTAAACGGCACCGTTTCGTTATATAACGTTACTGGTGTGATTTGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGATGCTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTTCTGGAGCACCATATTAATCGTTGGTATATGCTATACCATCTTTGATCTGGGATTCCGCTTTGATGTGGCATGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTGGTCGGAGCAGCCTGGGGAATCTACATCACTGGCTCCAGCATCATTGGTGGTGGCGTAAAGGCTCCACGAATCAAAACCAAGAATTTGGTCAGCATCATCTTCTGTGAAGCTGTAGCCATTTATGGCATCATCATGGCCATCGTGATCAGCAACATGGCCGAGGAATTCAGTGGAACCACTCCTGAAACCATCGGGGCAAGAAATTACCAGGCTGGTTACTCCATGT] [+] EMBL BU806051 [CTCCTTTGCTCCGTGACATCTGTCGCTCGATTGAGCTTCATTAAACGGCACCGTTTCGTTATATAACGTTACTGGTGTGATTTGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGATACTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTTCTGGAGCACCATATTAATCGTTGGTATATGCTATACCATCTTTGATCTGGGATTCCGCTTTGATGTGGCATGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTGGTCGGAGCAGCCTGGGGAATCTACATCACTGGCTCCAGCATCATTGGTGGTGGCGTAAAGGCTCCACGAATCAAAACCAAGAATTTGGTCAGCATCATCTTCTGTGAAGCTGTAGCCATTTATGGCATCATCATGGCCATCGTGATCAGCAACATGGCCGAGGAATTCAGTGGAACCACTCCTGAAACCATCGGGGCAAGAAATTACCAGGCTGGTTACTCCATGT] [+] EMBL BU807290 [CTCCTTTGCTCCGTGACATCTGTCGCTCGATTGAGCTTCATTAAACGGCACCGTTTCGTTATATAACGTTACTGGTGTGATTTGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGATGCTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTTCTGGAGCACCATATTAATCGTTTTTATATGCTATACCATCTTTGATCTGGGATTCCGCTTTGATGTGGCATGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTGGTCGGAGCAGCCTGGGGAATCTACATCACTGGCTCCAGCATCATTGGTGGTGGCGTAAAGGCTCCACGAATCAAAACCAAGAATTTGGTCAGCATCATCTTCTGTGAAGCTGTAGCCATTTATGGCATCATCATGGCCATCGTGATCAGCA ] [+] EMBL BU806193 [CTCCTTTGCTCCGTGACATCTGTCGCTCGATTGAGCTTCATTAAACGGCACCGTTTCGTTATATAACGTTACTGGTGTGATTTGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGATGCTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTTCTGGAGCACCATATTAATCGTTGGTATATGCTATACCATCTTTGATCTGGGATTCCGCTTTGATGTGGCATGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTGGTCGGAGCAGCCTGGGGAATCTACATCACTGGCTCCAGCATCATTGGTGGTGGCGTAAAGGCTCCACGAATCAAAACCAAGAATTTGGTCAGCATCATCTTCTGTGAAGCTGTAGCCA ] consensusID : consensus_2257#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [TGCATCATATGACCCCAGCCAGCTTCCTCCTTTGCTCCGTGACATCTGTCGCTCGATTGAGCTTCATTAAACGGCACCGTTTCGTTATATAACGTTACTGGTGTGATTTGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGATGCTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTTCTGGAGCACCATATTAATCGTTGGTATATGCTATACCATCTTTGATCTGGGATTCCGCTTTGATGTGGCATGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTGGTCGGAGCAGCCTGGTGAGTAAACCAACAGGAGGGACAGGAAGGATAAAACTGTGAATTAGTGGAGGTTGGAATAGATTCCTCTTTCTTAAAGCTTCAGGAAAAACAGATGCGTAAATGTGGAACCAGAAAACAGGAACATGAGTGTATGTTTGATGGAGCAGCTCA] [+] EMBL CA590203 [TGCATCATATGACCCCAGCCAGCTTCCTCCTTTGCTCCGTGACATCTGTCGCTCGATTGAGCTTCATTAAACGGCACCGTTTCGTTATATAACGTTACTGGTGTGATTTGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGATGCTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTTCTGGAGCACCATATTAATCGTTGGTATATGCTATACCATCTTTGATCTGGGATTCCGCTTTGATGTGGCATGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTGGTCGGAGCAGCCTGGTGAGTAAACCAACAGGAGGGACAGGAAGGATAAAACTGTGAATTAGTGGAGGTTGGAATAGATTCCTCTTTCTTAAAGCTTCAGGAAAAACAGATGCGTAAATGTGGAACCAGAAAACAGGAACATGAGTGTATGTTTGATGGAGCAGCTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2257#1 -------------------------------------CTCCTTTGCTCCGTGACATCTGT 23 consensus_2257#2 -----------TGCATCATATGACCCCAGCCAGCTTCCTCCTTTGCTCCGTGACATCTGT 49 consensus_2257#0 TTGATGTGGCATTCTGAGCAGACTATAAAATACATCAATTAATCAATCAATTAGATTTCT 60 * * ** * * ** * * consensus_2257#1 CGCTCG-ATTGAGCTTCATTAAACGGCACCGTTTCG--TTATAT-AACGTTACTGGTGTG 79 consensus_2257#2 CGCTCG-ATTGAGCTTCATTAAACGGCACCGTTTCG--TTATAT-AACGTTACTGGTGTG 105 consensus_2257#0 GACCCACAGTGAGAATTTAAAAGTTACCTTATTCTGAATTTTATCAACTTTATTGACAAG 120 * * * **** * ** * ** * ** *** *** *** ** * consensus_2257#1 ATT--TGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGAT 137 consensus_2257#2 ATT--TGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGAT 163 consensus_2257#0 AATGTTGTGTGGGGCTGTATGCAACTGATGGATTTCCCTTGATTG---CATCAAATCCAT 177 * * *** * *** * * ** * * * * ** ** * ** ** consensus_2257#1 GCTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTT 197 consensus_2257#2 GCTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTT 223 consensus_2257#0 ATCA-TAAAATGAAAGTAAGATTGACTC--TGCTGAATATACACAAATAACT---GCTCT 231 ** * ** * * * *** * * * ***** * *** ** * consensus_2257#1 CTGGAGCACCATATTAATCGTTGGTATATGCTATACCATCTTTGATCTGGGATTCCGCTT 257 consensus_2257#2 CTGGAGCACCATATTAATCGTTGGTATATGCTATACCATCTTTGATCTGGGATTCCGCTT 283 consensus_2257#0 ATGTAATATCTT-CTAGTGCTGCGGGGATGCTTTTAAGGCCT--GCTTTGTCTCCAGGAA 288 ** * * * * ** * * * ***** * * * * * * * * consensus_2257#1 TGATGTGGCATGGTTCCTGACAGAGACGTCCC-CATTCATGTGGGCCTGTCTGGGCATCG 316 consensus_2257#2 TGATGTGGCATGGTTCCTGACAGAGACGTCCC-CATTCATGTGGGCCTGTCTGGGCATCG 342 consensus_2257#0 GGCTGCAGCTCCTCTGTTTTAATGACCATTAAACCTTTATGTGAAAATG-CGATAAATAC 347 * ** ** * * * * * * ** ***** ** * ** consensus_2257#1 GCCTGGCCATTTC---TCTGTCTGTGGTCGG-AGCAGCCTGGGGAATCTACATCACTGGC 372 consensus_2257#2 GCCTGGCCATTTC---TCTGTCTGTGGTCGG-AGCAGCCTGGTGAGTAAAC--------- 389 consensus_2257#0 AATAAGCTGTTTTGCACCAGCCTGCGGTCGACAATGGCCCAGTAGTCGGGCAAA---GGT 404 ** *** * * *** ***** * *** * * consensus_2257#1 TCCAGCATCATTGGTGGTGGCGTAAAGGCTCCACGAATCAAAACCAAGAAT-TTGGTCAG 431 consensus_2257#2 --CAACAGGAGGGACAGGAAGGATAAAACT--GTGAATTAG---TGGAGGT-TGGAATAG 441 consensus_2257#0 TTCCGTCTCTTTTCCATTTTGTTGTAGATTCTCTTGCTCTCTTTTAATGGTGCACGACAG 464 * * * * * ** consensus_2257#1 CATCATCT----TCTGTGAAGCTGTAGCCATTT-ATG--GCATCATCATGGCCATCGTGA 484 consensus_2257#2 ATTCCTCT----TTCTTAAAGCTTCAGGAAAAA-CAGATGCGTAAATGTGGAACCAGAAA 496 consensus_2257#0 GAATGTTTGCAGTGTCTCACTTTGTCACGGTGAGCTGAAGCGTCGTGATTGACCATTTTG 524 * * * * * * * ** * * * consensus_2257#1 TCAGCAACATGGCCGAGGAATT--CAGTGGAACCACTCCTGAAACCATCGGGGCAAGAAA 542 consensus_2257#2 ACAGGAACATGAGTGTATG-TT--TGATGGAGCAGCTCA--------------------- 532 consensus_2257#0 TCTGCGTCTTTGCTCGCAGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGG 584 * * * * ** ** * consensus_2257#1 TTACCAGGCTGGTTACTCCATGT------ 565 consensus_2257#2 ----------------------------- consensus_2257#0 GCATCGGCCTGGCCATTTCTCTGTCTGTG 613 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |