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Takifugu rubripes
cluster # 2262 cluster # 2262       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2262#0 length = 355 sequences # 4  
 consensus_2262#1 length = 237 sequences # 1  
consensusID : consensus_2262#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 355
fasta sequence 
                              [TGACCTTCCTTCCACTGCGATACTCTGAAAGATGGCCGGACGGGTGTTTGCTAATTGGTGGAGTAAGGTGGGCCCTTATTACACAAAGGCGTACCAGGAGATGTGGGTCGGCATCGGCCTCATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGCTGTGAAGAGCCCGCCGGCCCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCT---GCTGTCAGA-TAACACCCCAGCTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTCCCACACTTAAAAACATAAAAAAAAAACTCGAGGGGGGGCCCGGTCCCCAGTTTTT]

[+] EMBL CA330036             [TGACCTTCCTTCCACTGCGATACTCTGAAAGATGGCCGGACGGGTGTTTGCTAATTGGTGGAGTAAGGTGGGCCCTTATTACACAAAGGCGTACCAGGAGATGTGGGTCGGCATCGGCCTCATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGCTGTGAAGAGCCCGCCGGCCCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCT   GCTGTCAGA TAACACCCCAGCTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTCCCACA                                                  ]
[+] EMBL FR0055178            [                     ACTCTGAAAGATGGCCGGACGGGTGTTTGCTAATTGGTGGAGTAAGGTGGGCCCTTATTACACAAAGGCGTACCAGGAGATGTGGGTCGGCATCGGCCTCATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGCTGTGAAGAGCCCGCCGGCCCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCT   GCTGTCAGA TAACACCCCAGCTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTCCCACACTTAAAAACATAAAAAAAAAACTCGAGGGGGGGCCCGGTCCCCAGTTTTT]
[+] EMBL FR0055843            [                                      GACGGTTGTTTGCTAATTGGTGGAGTAAGGTGGGCCCTTATTACACAAAGGCGTACCAGGAGATGTGGGTCGGCATCGGCCTCATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAGAAAGGCTGTGAAGAGCCCGCCGGCCCACTGAGGACCCGCCCTGCCCGCCACCCGTTCCGCTCTGGCTGTCAGAGTAGCACCCCAGCTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGGGACAATAAAGA                                                              ]
[+] EMBL CA845355             [                                                                                                                                                                                     GCCCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCT   GCTGTCAGA TAACACCCCAGCTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTCCCACA                                                  ]




>consensus_2262#0
TGACCTTCCTTCCACTGCGATACTCTGAAAGATGGCCGGACGGGTGTTTGCTAATTGGTG
GAGTAAGGTGGGCCCTTATTACACAAAGGCGTACCAGGAGATGTGGGTCGGCATCGGCCT
CATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGCTGTGAAGAGCCCGCC
GGCCCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCTGCTGTCAGATAACACCCCAG
CTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTC
CCACACTTAAAAACATAAAAAAAAAACTCGAGGGGGGGCCCGGTCCCCAGTTTTT

consensusID : consensus_2262#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 237
fasta sequence 
                              [GGTCGGCATCGGCCTCATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGATGTGAAGAGCCCGCCGGACCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCTGCTGTCAGATAACACCCCAGCTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTCCCACAAAAGATAGCCAAGAGTAAAAAAAGGAAAAAACGCACA]

[+] EMBL FR0055800            [GGTCGGCATCGGCCTCATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGATGTGAAGAGCCCGCCGGACCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCTGCTGTCAGATAACACCCCAGCTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTCCCACAAAAGATAGCCAAGAGTAAAAAAAGGAAAAAACGCACA]




>consensus_2262#1
GGTCGGCATCGGCCTCATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGA
TGTGAAGAGCCCGCCGGACCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCTGCTGT
CAGATAACACCCCAGCTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAAC
AATAAAGACGCTGTCCCACAAAAGATAGCCAAGAGTAAAAAAAGGAAAAAACGCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2262#0      TGACCTTCCTTCCACTGCGATACTCTGAAAGATGGCCGGACGGGTGTTTGCTAATTGGTG 60
consensus_2262#1      ------------------------------------------------------------
                                                                                  

consensus_2262#0      GAGTAAGGTGGGCCCTTATTACACAAAGGCGTACCAGGAGATGTGGGTCGGCATCGGCCT 120
consensus_2262#1      ---------------------------------------------GGTCGGCATCGGCCT 15
                                                                   ***************

consensus_2262#0      CATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGCTGTGAAGAGCCCGCC 180
consensus_2262#1      CATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGATGTGAAGAGCCCGCC 75
                      ******************************************** ***************

consensus_2262#0      GGCCCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCTGCTGTCAGATAACACCCCAG 240
consensus_2262#1      GGACCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCTGCTGTCAGATAACACCCCAG 135
                      ** *********************************************************

consensus_2262#0      CTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTC 300
consensus_2262#1      CTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTC 195
                      ************************************************************

consensus_2262#0      CCACACTTAAAAACATAAAAAAAAAACTCGAGGGGGGGCCCGGTCCCCAGTTTTT 355
consensus_2262#1      CCACAAAAGATAGCCAAGAGTAAAAAAAGGAAAAAACGCACA------------- 237
                      *****    * * *  * *  *****   **      ** *


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)