cluster # 2263

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Takifugu rubripes
cluster # 2263 cluster # 2263 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2263#0 length = 470 sequences # 1

consensus_2263#1 length = 458 sequences # 1
consensus_2263#2 length = 380 sequences # 3

consensusID : consensus_2263#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [TGGAATCCCAGTGGAAGACCTTAGACTCGTATACACCGGCATTCAACTGGAGGACGACAGGCTGCTCTCGGATTATAGGATCCAACACGGGTCGACTGTTCATGTGGTTCAGCGTCTGCGTGGAGGTGGAGAGGTGCCTCATGAGATGGGAGCCAGTCAGGCAGGGGGTGTTAAACACCCATTATAAACGGGACATCATGGTGGGGTTGGTGATCTTATTTGCATGAAGAATGGGAACTTTGATCTTTTCACCTGGGAAGATAATGGAGAAGAAGGACTGTAGCAACACCAAATGGGACGGAAAGAAGAGGATGAGGTCATCCCAGCAGAGGAACTGGATTGGATCGCATGAACATTGAGAATTTGCATGTGTGTTTCTATAAAAGACTGGGCCAAGGGATAGTTAGGTTGTCAGACTTCCTGCCCTGGCAATTGACTCTGTTATTGTAGGGTTATGAACTGGCCCGGAG]

[+] EMBL CA844679             [TGGAATCCCAGTGGAAGACCTTAGACTCGTATACACCGGCATTCAACTGGAGGACGACAGGCTGCTCTCGGATTATAGGATCCAACACGGGTCGACTGTTCATGTGGTTCAGCGTCTGCGTGGAGGTGGAGAGGTGCCTCATGAGATGGGAGCCAGTCAGGCAGGGGGTGTTAAACACCCATTATAAACGGGACATCATGGTGGGGTTGGTGATCTTATTTGCATGAAGAATGGGAACTTTGATCTTTTCACCTGGGAAGATAATGGAGAAGAAGGACTGTAGCAACACCAAATGGGACGGAAAGAAGAGGATGAGGTCATCCCAGCAGAGGAACTGGATTGGATCGCATGAACATTGAGAATTTGCATGTGTGTTTCTATAAAAGACTGGGCCAAGGGATAGTTAGGTTGTCAGACTTCCTGCCCTGGCAATTGACTCTGTTATTGTAGGGTTATGAACTGGCCCGGAG]




>consensus_2263#0
TGGAATCCCAGTGGAAGACCTTAGACTCGTATACACCGGCATTCAACTGGAGGACGACAG
GCTGCTCTCGGATTATAGGATCCAACACGGGTCGACTGTTCATGTGGTTCAGCGTCTGCG
TGGAGGTGGAGAGGTGCCTCATGAGATGGGAGCCAGTCAGGCAGGGGGTGTTAAACACCC
ATTATAAACGGGACATCATGGTGGGGTTGGTGATCTTATTTGCATGAAGAATGGGAACTT
TGATCTTTTCACCTGGGAAGATAATGGAGAAGAAGGACTGTAGCAACACCAAATGGGACG
GAAAGAAGAGGATGAGGTCATCCCAGCAGAGGAACTGGATTGGATCGCATGAACATTGAG
AATTTGCATGTGTGTTTCTATAAAAGACTGGGCCAAGGGATAGTTAGGTTGTCAGACTTC
CTGCCCTGGCAATTGACTCTGTTATTGTAGGGTTATGAACTGGCCCGGAG

consensusID : consensus_2263#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence

                              [ATGTATATTGTATTCACCCCCTGTACTATGTATCCATTTACCTGGATCATTGTATATTCCCAATTTTATTCTATTTTATTTTTCTCTGCGTGCTCTTGCTGTTGTTGCGCTGTAAATTTCCCCGTGTGGGACAAATAAAAGACCTGAATCTGAATCTGAATGTGAACTTTGACCTGGGCATTTGGGAGACAATGCAGAACAAGGACTGTACCAGCATCCTTTGGGACTGGAAGAAGACGAGGTCATCCAAGCAGAAGGACTGGATTGGACTGAATTAGCATCACTAATTTGCATATGTGTTTCTATAAAAGACTGGGTCAAGGGATAGTTAGGTTGTCAGACTTCATGCCCTGGCAATTGACTCTGTTATTGTAGGGTTATGAACTGGCCTGGAGCGCTGTAATATTTGTATCTTGAATTGGTTCTATTAGCTAAATACAGTTTGAAATTGGCATTTT]

[+] EMBL CA333350             [ATGTATATTGTATTCACCCCCTGTACTATGTATCCATTTACCTGGATCATTGTATATTCCCAATTTTATTCTATTTTATTTTTCTCTGCGTGCTCTTGCTGTTGTTGCGCTGTAAATTTCCCCGTGTGGGACAAATAAAAGACCTGAATCTGAATCTGAATGTGAACTTTGACCTGGGCATTTGGGAGACAATGCAGAACAAGGACTGTACCAGCATCCTTTGGGACTGGAAGAAGACGAGGTCATCCAAGCAGAAGGACTGGATTGGACTGAATTAGCATCACTAATTTGCATATGTGTTTCTATAAAAGACTGGGTCAAGGGATAGTTAGGTTGTCAGACTTCATGCCCTGGCAATTGACTCTGTTATTGTAGGGTTATGAACTGGCCTGGAGCGCTGTAATATTTGTATCTTGAATTGGTTCTATTAGCTAAATACAGTTTGAAATTGGCATTTT]




>consensus_2263#1
ATGTATATTGTATTCACCCCCTGTACTATGTATCCATTTACCTGGATCATTGTATATTCC
CAATTTTATTCTATTTTATTTTTCTCTGCGTGCTCTTGCTGTTGTTGCGCTGTAAATTTC
CCCGTGTGGGACAAATAAAAGACCTGAATCTGAATCTGAATGTGAACTTTGACCTGGGCA
TTTGGGAGACAATGCAGAACAAGGACTGTACCAGCATCCTTTGGGACTGGAAGAAGACGA
GGTCATCCAAGCAGAAGGACTGGATTGGACTGAATTAGCATCACTAATTTGCATATGTGT
TTCTATAAAAGACTGGGTCAAGGGATAGTTAGGTTGTCAGACTTCATGCCCTGGCAATTG
ACTCTGTTATTGTAGGGTTATGAACTGGCCTGGAGCGCTGTAATATTTGTATCTTGAATT
GGTTCTATTAGCTAAATACAGTTTGAAATTGGCATTTT

consensusID : consensus_2263#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 380
fasta sequence

                              [TGTTTGATCTACTGTTATCTCAGGAGCCAGTCAGGCAGGGGGTGTCAAACACTCATTGTAAACAGGACATCAGGGGGGTCGATGATGATCACATTTGCATGAAGAATGGGATCTGGCCTGGGAAAACAATGGAAGAGAAGAACTCTACCAACACCAAAGGGACTGGAGGAAGAGGACGGGGACATCTCAGCGGGGGATTGCATGGACATTGTGAATTTGCATGTGTGTGACTATAAAGGACTGGGCCAAGGGATAGTTAGGTGGTCAGACTTCGTGCCCTGACGATTAACTCTGTTGTTGCTAGGGTTATGAACTGGCCCGGAGCTCTGTAATATTTGTGTCTGGAATTGATTCTATTGTTAAATACATTTTGAAATTGG]

[-] EMBL CA331860             [TGTTTGATCTACTGTTATCTCAGGAGCCAGTCAGGCAGGGGGTGTCAAACACTCATTGTAAACAGGACATCAGGGGGGTCGATGATGATCACATTTGCATGAAGAATGGGATCTGGCCTGGGAAAACAATGGAAGAGAAGAACTCTACCAACACCAAAGGGACTGGAGGAAGAGGACGGGGACATCTCAGCGGGGGATTGCATGGACATTGTGAATTTGCATGTGTGTGACTATAAAGGACTGGGCCAAGGGATAGTTAGCTGGTCAGACTTCGTGCCCTGACAATTAACTTTGTTGTTGCTAGGGTTATGAACTGGCCCGGAGCTCTGTAATATTTGTGTCTGGAATTGATTCTATTGTTAAATACATTTTGAAATTGG]
[+] EMBL CA846738             [                                                                                                                                                                                                                                                               GTTAGGTTGTCAGACTTCGTGCCCTGACGATTAACTCTGTTGTTGCTAGGGTTATGAACTGGCCCGGAGCTCTGTAATATTTGTGTCTGGAATTGATTCTATTGTTAAATACATTTTGAAA    ]
[+] EMBL CA846587             [                                                                                                                                                                                                                                                                         CAGACTTCGTGCCCTGACGATTAACTCTGTTGTTGCTAGGGTTATGAACTGGCCCGGAGCTCTGTAATATTTGTGTCTGGAATTGATTCTATTGTTAAATACATTTTGAAA    ]




>consensus_2263#2
TGTTTGATCTACTGTTATCTCAGGAGCCAGTCAGGCAGGGGGTGTCAAACACTCATTGTA
AACAGGACATCAGGGGGGTCGATGATGATCACATTTGCATGAAGAATGGGATCTGGCCTG
GGAAAACAATGGAAGAGAAGAACTCTACCAACACCAAAGGGACTGGAGGAAGAGGACGGG
GACATCTCAGCGGGGGATTGCATGGACATTGTGAATTTGCATGTGTGTGACTATAAAGGA
CTGGGCCAAGGGATAGTTAGGTGGTCAGACTTCGTGCCCTGACGATTAACTCTGTTGTTG
CTAGGGTTATGAACTGGCCCGGAGCTCTGTAATATTTGTGTCTGGAATTGATTCTATTGT
TAAATACATTTTGAAATTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2263#0      TGGAATCCCAGTGGAAGACCTTAGACTCGTATACACCGGCATTCAACTGGAGGACGACAG 60
consensus_2263#2      ------------------------------------------------------------
consensus_2263#1      ------------------------------------------------------------
                                                                                  

consensus_2263#0      GCTGCTCTCGGATTATAGGATCCAACACGGGTCGACTGTTCATGTGGTTCAGCGTCTGCG 120
consensus_2263#2      ------------------------------------------------------------
consensus_2263#1      --------ATGTATATTGTATTCACCCCCTGT--ACTATGTATCCATTTACCTGGATCAT 50
                                                                                  

consensus_2263#0      TGGAGGTGGAGAGGTGCCTCATGAGATGGGAGCCAGTCAGGCAGGGGGTGTTAAACACCC 180
consensus_2263#2      ------TGTTTGATCTACTGTTATCTCAGGAGCCAGTCAGGCAGGGGGTGTCAAACACTC 54
consensus_2263#1      TGTATATTCCCAATTTTATTCTATTTTATTTTTC--TCTGCGTGCTCTTGCTGTTGTTGC 108
                            *           *  *           *  ** *   *    **         *

consensus_2263#0      ATTATAAACGGGACATCATGGTGGG-GTTGGTGATCTTATTTGCATGAAGAATGGGAACT 239
consensus_2263#2      ATTGTAAACAGGACATCAGGGGGGTCGATGATGATCACATTTGCATGAAGAATGGGA--- 111
consensus_2263#1      GCTGTAAATTTCCCCGTGTGGGACAAATAAAAGACCTGAATCTGAATCTGAATGTGAACT 168
                        * ****     *     **           ** *  * *   *    ***** **   

consensus_2263#0      TTGATCTTTTCACCTGGGAAGATAATGGAGAAGAAGGACTGTAGCAACACCAAATGGGAC 299
consensus_2263#2      -------TCTGGCCTGGGAAAACAATGGAAGAGAAGAACTCTACCAACACCAAA-GGGAC 163
consensus_2263#1      TTGACCTGGGCATTTGGGA-GACAATGCAGAACAAGGACTGTACCAGCATCCTTTGGGAC 227
                                    *****  * **** *  * *** *** ** ** ** *    *****

consensus_2263#0      GGAAAGAAGAGGATGAGGTCATCCCAGCAGAGGAACTGGATTGGATCGCATGAACATTGA 359
consensus_2263#2      TGGAGGAAGAGGACGGGGACATCTCAGCGGGGGA-----------TTGCATGGACATTGT 212
consensus_2263#1      TG---GAAGAAGACGAGGTCATCCAAGCAGAAGGACTGGATTGGACTGAATTAGCATCAC 284
                       *   ***** ** * ** ****  *** *  *              * **   ***   

consensus_2263#0      GAATTTGCATGTGTGTTTCTATAAAAGACTGGGCCAAGGGATAGTTAGGTTGTCAGACTT 419
consensus_2263#2      GAATTTGCATGTGTGTGACTATAAAGGACTGGGCCAAGGGATAGTTAGGTGGTCAGACTT 272
consensus_2263#1      TAATTTGCATATGTGTTTCTATAAAAGACTGGGTCAAGGGATAGTTAGGTTGTCAGACTT 344
                       ********* *****  ******* ******* **************** *********

consensus_2263#0      CCTGCCCTGGCAATTGACTCTGTTATTG-TAGGGTTATGAACTGGCCCGGAG-------- 470
consensus_2263#2      CGTGCCCTGACGATTAACTCTGTTGTTGCTAGGGTTATGAACTGGCCCGGAGCTCTGTAA 332
consensus_2263#1      CATGCCCTGGCAATTGACTCTGTTATTG-TAGGGTTATGAACTGGCCTGGAGCGCTGTAA 403
                      * ******* * *** ******** *** ****************** ****        

consensus_2263#0      -------------------------------------------------------
consensus_2263#2      TATTTGTGTCTGGAATTGATTCTATT-GTTAAATACATTTTGAAATTGG------ 380
consensus_2263#1      TATTTGTATCTTGAATTGGTTCTATTAGCTAAATACAGTTTGAAATTGGCATTTT 458

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)