These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [TGGAATCCCAGTGGAAGACCTTAGACTCGTATACACCGGCATTCAACTGGAGGACGACAGGCTGCTCTCGGATTATAGGATCCAACACGGGTCGACTGTTCATGTGGTTCAGCGTCTGCGTGGAGGTGGAGAGGTGCCTCATGAGATGGGAGCCAGTCAGGCAGGGGGTGTTAAACACCCATTATAAACGGGACATCATGGTGGGGTTGGTGATCTTATTTGCATGAAGAATGGGAACTTTGATCTTTTCACCTGGGAAGATAATGGAGAAGAAGGACTGTAGCAACACCAAATGGGACGGAAAGAAGAGGATGAGGTCATCCCAGCAGAGGAACTGGATTGGATCGCATGAACATTGAGAATTTGCATGTGTGTTTCTATAAAAGACTGGGCCAAGGGATAGTTAGGTTGTCAGACTTCCTGCCCTGGCAATTGACTCTGTTATTGTAGGGTTATGAACTGGCCCGGAG] [+] EMBL CA844679 [TGGAATCCCAGTGGAAGACCTTAGACTCGTATACACCGGCATTCAACTGGAGGACGACAGGCTGCTCTCGGATTATAGGATCCAACACGGGTCGACTGTTCATGTGGTTCAGCGTCTGCGTGGAGGTGGAGAGGTGCCTCATGAGATGGGAGCCAGTCAGGCAGGGGGTGTTAAACACCCATTATAAACGGGACATCATGGTGGGGTTGGTGATCTTATTTGCATGAAGAATGGGAACTTTGATCTTTTCACCTGGGAAGATAATGGAGAAGAAGGACTGTAGCAACACCAAATGGGACGGAAAGAAGAGGATGAGGTCATCCCAGCAGAGGAACTGGATTGGATCGCATGAACATTGAGAATTTGCATGTGTGTTTCTATAAAAGACTGGGCCAAGGGATAGTTAGGTTGTCAGACTTCCTGCCCTGGCAATTGACTCTGTTATTGTAGGGTTATGAACTGGCCCGGAG] consensusID : consensus_2263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [ATGTATATTGTATTCACCCCCTGTACTATGTATCCATTTACCTGGATCATTGTATATTCCCAATTTTATTCTATTTTATTTTTCTCTGCGTGCTCTTGCTGTTGTTGCGCTGTAAATTTCCCCGTGTGGGACAAATAAAAGACCTGAATCTGAATCTGAATGTGAACTTTGACCTGGGCATTTGGGAGACAATGCAGAACAAGGACTGTACCAGCATCCTTTGGGACTGGAAGAAGACGAGGTCATCCAAGCAGAAGGACTGGATTGGACTGAATTAGCATCACTAATTTGCATATGTGTTTCTATAAAAGACTGGGTCAAGGGATAGTTAGGTTGTCAGACTTCATGCCCTGGCAATTGACTCTGTTATTGTAGGGTTATGAACTGGCCTGGAGCGCTGTAATATTTGTATCTTGAATTGGTTCTATTAGCTAAATACAGTTTGAAATTGGCATTTT] [+] EMBL CA333350 [ATGTATATTGTATTCACCCCCTGTACTATGTATCCATTTACCTGGATCATTGTATATTCCCAATTTTATTCTATTTTATTTTTCTCTGCGTGCTCTTGCTGTTGTTGCGCTGTAAATTTCCCCGTGTGGGACAAATAAAAGACCTGAATCTGAATCTGAATGTGAACTTTGACCTGGGCATTTGGGAGACAATGCAGAACAAGGACTGTACCAGCATCCTTTGGGACTGGAAGAAGACGAGGTCATCCAAGCAGAAGGACTGGATTGGACTGAATTAGCATCACTAATTTGCATATGTGTTTCTATAAAAGACTGGGTCAAGGGATAGTTAGGTTGTCAGACTTCATGCCCTGGCAATTGACTCTGTTATTGTAGGGTTATGAACTGGCCTGGAGCGCTGTAATATTTGTATCTTGAATTGGTTCTATTAGCTAAATACAGTTTGAAATTGGCATTTT] consensusID : consensus_2263#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 380 fasta sequence [TGTTTGATCTACTGTTATCTCAGGAGCCAGTCAGGCAGGGGGTGTCAAACACTCATTGTAAACAGGACATCAGGGGGGTCGATGATGATCACATTTGCATGAAGAATGGGATCTGGCCTGGGAAAACAATGGAAGAGAAGAACTCTACCAACACCAAAGGGACTGGAGGAAGAGGACGGGGACATCTCAGCGGGGGATTGCATGGACATTGTGAATTTGCATGTGTGTGACTATAAAGGACTGGGCCAAGGGATAGTTAGGTGGTCAGACTTCGTGCCCTGACGATTAACTCTGTTGTTGCTAGGGTTATGAACTGGCCCGGAGCTCTGTAATATTTGTGTCTGGAATTGATTCTATTGTTAAATACATTTTGAAATTGG] [-] EMBL CA331860 [TGTTTGATCTACTGTTATCTCAGGAGCCAGTCAGGCAGGGGGTGTCAAACACTCATTGTAAACAGGACATCAGGGGGGTCGATGATGATCACATTTGCATGAAGAATGGGATCTGGCCTGGGAAAACAATGGAAGAGAAGAACTCTACCAACACCAAAGGGACTGGAGGAAGAGGACGGGGACATCTCAGCGGGGGATTGCATGGACATTGTGAATTTGCATGTGTGTGACTATAAAGGACTGGGCCAAGGGATAGTTAGCTGGTCAGACTTCGTGCCCTGACAATTAACTTTGTTGTTGCTAGGGTTATGAACTGGCCCGGAGCTCTGTAATATTTGTGTCTGGAATTGATTCTATTGTTAAATACATTTTGAAATTGG] [+] EMBL CA846738 [ GTTAGGTTGTCAGACTTCGTGCCCTGACGATTAACTCTGTTGTTGCTAGGGTTATGAACTGGCCCGGAGCTCTGTAATATTTGTGTCTGGAATTGATTCTATTGTTAAATACATTTTGAAA ] [+] EMBL CA846587 [ CAGACTTCGTGCCCTGACGATTAACTCTGTTGTTGCTAGGGTTATGAACTGGCCCGGAGCTCTGTAATATTTGTGTCTGGAATTGATTCTATTGTTAAATACATTTTGAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2263#0 TGGAATCCCAGTGGAAGACCTTAGACTCGTATACACCGGCATTCAACTGGAGGACGACAG 60 consensus_2263#2 ------------------------------------------------------------ consensus_2263#1 ------------------------------------------------------------ consensus_2263#0 GCTGCTCTCGGATTATAGGATCCAACACGGGTCGACTGTTCATGTGGTTCAGCGTCTGCG 120 consensus_2263#2 ------------------------------------------------------------ consensus_2263#1 --------ATGTATATTGTATTCACCCCCTGT--ACTATGTATCCATTTACCTGGATCAT 50 consensus_2263#0 TGGAGGTGGAGAGGTGCCTCATGAGATGGGAGCCAGTCAGGCAGGGGGTGTTAAACACCC 180 consensus_2263#2 ------TGTTTGATCTACTGTTATCTCAGGAGCCAGTCAGGCAGGGGGTGTCAAACACTC 54 consensus_2263#1 TGTATATTCCCAATTTTATTCTATTTTATTTTTC--TCTGCGTGCTCTTGCTGTTGTTGC 108 * * * * ** * * ** * consensus_2263#0 ATTATAAACGGGACATCATGGTGGG-GTTGGTGATCTTATTTGCATGAAGAATGGGAACT 239 consensus_2263#2 ATTGTAAACAGGACATCAGGGGGGTCGATGATGATCACATTTGCATGAAGAATGGGA--- 111 consensus_2263#1 GCTGTAAATTTCCCCGTGTGGGACAAATAAAAGACCTGAATCTGAATCTGAATGTGAACT 168 * **** * ** ** * * * * ***** ** consensus_2263#0 TTGATCTTTTCACCTGGGAAGATAATGGAGAAGAAGGACTGTAGCAACACCAAATGGGAC 299 consensus_2263#2 -------TCTGGCCTGGGAAAACAATGGAAGAGAAGAACTCTACCAACACCAAA-GGGAC 163 consensus_2263#1 TTGACCTGGGCATTTGGGA-GACAATGCAGAACAAGGACTGTACCAGCATCCTTTGGGAC 227 ***** * **** * * *** *** ** ** ** * ***** consensus_2263#0 GGAAAGAAGAGGATGAGGTCATCCCAGCAGAGGAACTGGATTGGATCGCATGAACATTGA 359 consensus_2263#2 TGGAGGAAGAGGACGGGGACATCTCAGCGGGGGA-----------TTGCATGGACATTGT 212 consensus_2263#1 TG---GAAGAAGACGAGGTCATCCAAGCAGAAGGACTGGATTGGACTGAATTAGCATCAC 284 * ***** ** * ** **** *** * * * ** *** consensus_2263#0 GAATTTGCATGTGTGTTTCTATAAAAGACTGGGCCAAGGGATAGTTAGGTTGTCAGACTT 419 consensus_2263#2 GAATTTGCATGTGTGTGACTATAAAGGACTGGGCCAAGGGATAGTTAGGTGGTCAGACTT 272 consensus_2263#1 TAATTTGCATATGTGTTTCTATAAAAGACTGGGTCAAGGGATAGTTAGGTTGTCAGACTT 344 ********* ***** ******* ******* **************** ********* consensus_2263#0 CCTGCCCTGGCAATTGACTCTGTTATTG-TAGGGTTATGAACTGGCCCGGAG-------- 470 consensus_2263#2 CGTGCCCTGACGATTAACTCTGTTGTTGCTAGGGTTATGAACTGGCCCGGAGCTCTGTAA 332 consensus_2263#1 CATGCCCTGGCAATTGACTCTGTTATTG-TAGGGTTATGAACTGGCCTGGAGCGCTGTAA 403 * ******* * *** ******** *** ****************** **** consensus_2263#0 ------------------------------------------------------- consensus_2263#2 TATTTGTGTCTGGAATTGATTCTATT-GTTAAATACATTTTGAAATTGG------ 380 consensus_2263#1 TATTTGTATCTTGAATTGGTTCTATTAGCTAAATACAGTTTGAAATTGGCATTTT 458 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |