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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[GCTGTTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGGTGAGCAGAACAAACCTTTGAGTTCTGAAGAGATGAAGTGGAATTTGACTGATCCGCTCCGTCTTCCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGCCTGACCGAGCTCCAGAAGATAGATCAGATGGAGTTCGAGGCCGCTCAAAGGAACGAAGCCGCCCACAAGAACGTCACAGAGGAACAGAAAGACGACAGCGGCCATCATCACGATGAGCAGAGTGCAGCTGAAGGCGACGGCAAAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAATCCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGGAGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTT]
[+] EMBL CA333365 [GCTGTTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGGTGAGCAGAACAAACCTTTGAGTTCTGAAGAGATGAAGTGGAATTTGACTGATCCGCTCCGTCTTCCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGCCTGACCGAGCTCCAGAAGATAGATCAGATGGAGTTCGAGGCCGCTCAAAGGAACGAAGCCGCCCACAAGAACGTCACAGAGGAACAGAAAGACGACAGCGGCCATCATCACGATGAGCAGAGTGCAGCTGAAGGCGACGGCAAAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAATCCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGGAGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTT]
consensusID : consensus_2264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 607 fasta sequence
[GGGACCTTCAGAACCGCAAGATGAAACTTCCAGCGCTGCTGATTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGNCTGACCGAGCTCGAGAAGATAGATCAGATGGAGTTCGAGGACGCTCAAAGGAACGAAGGCGCCCACAAGGAACGTCACAGAGGAACAGAAAGACGACAGCGGGCATCATCACGGTGAGGATGAGCAGAGTGGAGCTGAAGGCGACGGCANAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAATCCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGGAGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTTTAAAACACCATAAAGATTTACAC]
[+] EMBL CA330761 [GGGACCTTCAGAACCGCAAGATGAAACTTCCAGCGCTGCTG TTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGCCTGACCGAGCTCCAGAAGATAGATCAGATGGAGTTCGAGGCCGCTCAAAGGAACGAAGCCGCCCACAA GAACGTCACAGAGGAACAGAAAGACGACAGCGGCCATCATCACGGTGAGGATGAGCAGAGTGCAGCTGAAGGCGACGGCAAAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAATCCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGGAGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTG ]
[+] EMBL FR0055478 [ AACTTCCAGCGCTGCTGATTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGNCTGACCGAGCTCGAGAAGATAGATCAGATGGAGTTCGAGGACGCTCAAAGGAACGAAGGCGTCCACAAGGACCGTCACAGAGGAACAGAAAGACGACAGCGGGCATCATCACGGTGAGGATGAGCAGAGTGGAGCTGAAGGCGACGGCANAGAGCAGAGAAGCGGAACTTCCCACGCT ]
[+] EMBL CA330016 [ CGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTTTAAAACACCATAAAGATTTACAC]
[+] EMBL CA333497 [ CCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTTTAAAACACCATAAAGATTTACA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2264#0 GCTGTTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGGTGAGCAGAACAAACCTTTGAG 60
consensus_2264#1 ---------------------------GGGACCTTCAGAACCGCAAGATGAAACTTCCAG 33
* ** **** *** * ** *** **
consensus_2264#0 TTCTGAAGAGATGAAGTGGAATTTGACTGATCCGCTCCGTCTTCCAGCTCTCTCTGCGTC 120
consensus_2264#1 CGCTGCTGATTTGTGTC----TCTCTCTGTTGCAGCGTTTCCATCAGCTCTCTCTGCGTC 89
*** ** ** * * *** * * ** ****************
consensus_2264#0 CCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGCCTGACCGAGCTCCA 180
consensus_2264#1 CCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGNCTGACCGAGCTCGA 149
********************************************* ************ *
consensus_2264#0 GAAGATAGATCAGATGGAGTTCGAGGCCGCTCAAAGGAACGAAGCCGCCCACAAG-AACG 239
consensus_2264#1 GAAGATAGATCAGATGGAGTTCGAGGACGCTCAAAGGAACGAAGGCGCCCACAAGGAACG 209
************************** ***************** ********** ****
consensus_2264#0 TCACAGAGGAACAGAAAGACGACAGCGGCCATCATCACG------ATGAGCAGAGTGCAG 293
consensus_2264#1 TCACAGAGGAACAGAAAGACGACAGCGGGCATCATCACGGTGAGGATGAGCAGAGTGGAG 269
**************************** ********** ************ **
consensus_2264#0 CTGAAGGCGACGGCAAAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAAT 353
consensus_2264#1 CTGAAGGCGACGGCANAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAAT 329
*************** ********************************************
consensus_2264#0 CCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGG 413
consensus_2264#1 CCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGG 389
************************************************************
consensus_2264#0 AGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATG 473
consensus_2264#1 AGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATG 449
************************************************************
consensus_2264#0 ATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTA 533
consensus_2264#1 ATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTA 509
************************************************************
consensus_2264#0 TGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTT 593
consensus_2264#1 TGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTT 569
************************************************************
consensus_2264#0 GTCTGACGTGTACTT----------------------- 608
consensus_2264#1 GTCTGACGTGTACTTTAAAACACCATAAAGATTTACAC 607
***************
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |