cluster # 2267

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 2267 cluster # 2267 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2267#0 length = 452 sequences # 1
consensus_2267#1 length = 449 sequences # 1

consensus_2267#2 length = 342 sequences # 2
consensus_2267#3 length = 312 sequences # 1

consensusID : consensus_2267#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence

                              [ATCACTGATGCTCCTCTAAATATTGCCTTTTGTAAATATTTTTATTTACCCCCACCAAATCTAATTTTTCAGTTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCGGCACTGGGGTTCCTGGGGCGACTGTTCTGAAAAAAAAAAATTTGAGGGTCGAATGTTCACCCAAAGATTCTAAAGTCAAAGCTGGAAGAATTTTCAGTGAAAATTTATCGTTTTCCT]

[+] EMBL CA330843             [ATCACTGATGCTCCTCTAAATATTGCCTTTTGTAAATATTTTTATTTACCCCCACCAAATCTAATTTTTCAGTTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCGGCACTGGGGTTCCTGGGGCGACTGTTCTGAAAAAAAAAAATTTGAGGGTCGAATGTTCACCCAAAGATTCTAAAGTCAAAGCTGGAAGAATTTTCAGTGAAAATTTATCGTTTTCCT]




>consensus_2267#0
ATCACTGATGCTCCTCTAAATATTGCCTTTTGTAAATATTTTTATTTACCCCCACCAAAT
CTAATTTTTCAGTTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGG
CTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAG
CTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCG
CGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCC
TGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCGGCACTGGGGTTCCTGGGGCGACTGT
TCTGAAAAAAAAAAATTTGAGGGTCGAATGTTCACCCAAAGATTCTAAAGTCAAAGCTGG
AAGAATTTTCAGTGAAAATTTATCGTTTTCCT

consensusID : consensus_2267#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [AGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGGTGCGGCAC]

[+] EMBL CA329916             [AGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGGTGCGGCAC]




>consensus_2267#1
AGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTC
AGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAG
CGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGG
TCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGTGGCGACCGTGGCCCT
GGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGT
AGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAG
CGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGT
CCTGGCTGGTGCTGGTGCTGGTGCGGCAC

consensusID : consensus_2267#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 342
fasta sequence

                              [TGGTCCTCTAAATATTGCCTTTTGTAAATATTTTTATTTACACCAAATCCCCCACCAAATCCAAGAAACCAGGTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGCTGCTGCGGTTGCCAACGGAGGAGGNGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGCGGCAACCAATGTGGCCCTGGCTGGTGCTGGTGCGGCATTGGGGTTCCTGGGGCGACTGC]

[+] EMBL CA333388             [TGGTCCTCTAAATATTGCCTTTTGTAAATATTTTTATTTACACCAAATCCCCCACCAAATCTAATTTTTCAGGTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGCTGCTGCGGTTGCCAACGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGCGGCAACCAATGTGGCCCTGGCTGGTGCTGGTGCGGCATTGGGGTTCCTGGGGCGACTGC]
[+] EMBL FR0058019            [                                                             CATGAAACCTGGTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGCTGCTGCGGTTGCCAACGGAGGAGGNGTGGCAGCAGGCAGCGCGGTGG                                                                                                ]




>consensus_2267#2
TGGTCCTCTAAATATTGCCTTTTGTAAATATTTTTATTTACACCAAATCCCCCACCAAAT
CCAAGAAACCAGGTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGG
CTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAG
CTGCTAAGATGATGTCTGCTGCTGCGGTTGCCAACGGAGGAGGNGTGGCAGCAGGCAGCG
CGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGCGGCAACCAATGTGGCCC
TGGCTGGTGCTGGTGCGGCATTGGGGTTCCTGGGGCGACTGC

consensusID : consensus_2267#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [GCACGAGGGAAAACATGGACCCTGTTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCGGCACTGGGGTTCCTGGGGCGACTGT]

[+] EMBL CA330829             [GCACGAGGGAAAACATGGACCCTGTTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCGGCACTGGGGTTCCTGGGGCGACTGT]




>consensus_2267#3
GCACGAGGGAAAACATGGACCCTGTTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGA
CCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAG
CAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGG
CAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCA
CCAATGTGGTCCTGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCGGCACTGGGGTTCC
TGGGGCGACTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2267#0      ------------------------------------------------------------
consensus_2267#2      ------------------------------------------------------------
consensus_2267#3      ------------------------------------------------------------
consensus_2267#1      AGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTC 60
                                                                                  

consensus_2267#0      ----------------------------------------------ATCACTGATGCTCC 14
consensus_2267#2      ------------------------------------------------------TGGTCC 6
consensus_2267#3      ------------------------------------------------------------
consensus_2267#1      AGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAG 120
                                                                                  

consensus_2267#0      TCTA--AATATTGCCTTTTGTAAATATTTTTATTTAC--------CCCCACCAAATCTAA 64
consensus_2267#2      TCTA--AATATTGCCTTTTGTAAATATTTTTATTTACACCAAATCCCCCACCAAATCCAA 64
consensus_2267#3      --------------------------------------------GCACGAGGGAAAACAT 16
consensus_2267#1      CGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGG 180
                                                                     *            

consensus_2267#0      TTTTTCAGT---TACAGTTGTTGCTGTGGTTGGAG---GTGCTGTGGCGACCGTGGCCCT 118
consensus_2267#2      GAAACCAGG---TACAGTTGTTGCTGTGGTTGGAG---GTGCTGTGGCGACCGTGGCCCT 118
consensus_2267#3      GGACCCTGT---TACAGTTGTTGCTGTGGTTGGAG---GTGCTGTGGCGACCGTGGCCCT 70
consensus_2267#1      TCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGTGGCGACCGTGGCCCT 240
                           * *     **   *** *   *** *** *   **********************

consensus_2267#0      GGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGT 178
consensus_2267#2      GGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGT 178
consensus_2267#3      GGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGT 130
consensus_2267#1      GGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGT 300
                      ************************************************************

consensus_2267#0      AGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAG 238
consensus_2267#2      AGCTGCTAAGATGATGTCTGCTGCTGCGGTTGCCAACGGAGGAGGNGTGGCAGCAGGCAG 238
consensus_2267#3      AGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAG 190
consensus_2267#1      AGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAG 360
                      ******************** * ************ ********* **************

consensus_2267#0      CGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGT 298
consensus_2267#2      CGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGCGGCAACCAATGTGGC 298
consensus_2267#3      CGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGT 250
consensus_2267#1      CGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGT 420
                      ******************************************** *** ********** 

consensus_2267#0      CCTGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCGGCACTGGGGTTCCTGGGGCGACT 358
consensus_2267#2      CCTGGCTGGTGCTGGTGC------------------GGCATTGGGGTTCCTGGGGCGACT 340
consensus_2267#3      CCTGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCGGCACTGGGGTTCCTGGGGCGACT 310
consensus_2267#1      CCTGGCTGGTGCTGGTGCTGGTGC------------GGCAC------------------- 449
                      ******************                  ****                    

consensus_2267#0      GTTCTGAAAAAAAAAAATTTGAGGGTCGAATGTTCACCCAAAGATTCTAAAGTCAAAGCT 418
consensus_2267#2      GC---------------------------------------------------------- 342
consensus_2267#3      GT---------------------------------------------------------- 312
consensus_2267#1      ------------------------------------------------------------
                                                                                  

consensus_2267#0      GGAAGAATTTTCAGTGAAAATTTATCGTTTTCCT 452
consensus_2267#2      ----------------------------------
consensus_2267#3      ----------------------------------
consensus_2267#1      ----------------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)