These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2267#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence [ATCACTGATGCTCCTCTAAATATTGCCTTTTGTAAATATTTTTATTTACCCCCACCAAATCTAATTTTTCAGTTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCGGCACTGGGGTTCCTGGGGCGACTGTTCTGAAAAAAAAAAATTTGAGGGTCGAATGTTCACCCAAAGATTCTAAAGTCAAAGCTGGAAGAATTTTCAGTGAAAATTTATCGTTTTCCT] [+] EMBL CA330843 [ATCACTGATGCTCCTCTAAATATTGCCTTTTGTAAATATTTTTATTTACCCCCACCAAATCTAATTTTTCAGTTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCGGCACTGGGGTTCCTGGGGCGACTGTTCTGAAAAAAAAAAATTTGAGGGTCGAATGTTCACCCAAAGATTCTAAAGTCAAAGCTGGAAGAATTTTCAGTGAAAATTTATCGTTTTCCT] consensusID : consensus_2267#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [AGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGGTGCGGCAC] [+] EMBL CA329916 [AGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGGTGCGGCAC] consensusID : consensus_2267#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 342 fasta sequence [TGGTCCTCTAAATATTGCCTTTTGTAAATATTTTTATTTACACCAAATCCCCCACCAAATCCAAGAAACCAGGTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGCTGCTGCGGTTGCCAACGGAGGAGGNGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGCGGCAACCAATGTGGCCCTGGCTGGTGCTGGTGCGGCATTGGGGTTCCTGGGGCGACTGC] [+] EMBL CA333388 [TGGTCCTCTAAATATTGCCTTTTGTAAATATTTTTATTTACACCAAATCCCCCACCAAATCTAATTTTTCAGGTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGCTGCTGCGGTTGCCAACGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGCGGCAACCAATGTGGCCCTGGCTGGTGCTGGTGCGGCATTGGGGTTCCTGGGGCGACTGC] [+] EMBL FR0058019 [ CATGAAACCTGGTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGCTGCTGCGGTTGCCAACGGAGGAGGNGTGGCAGCAGGCAGCGCGGTGG ] consensusID : consensus_2267#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [GCACGAGGGAAAACATGGACCCTGTTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCGGCACTGGGGTTCCTGGGGCGACTGT] [+] EMBL CA330829 [GCACGAGGGAAAACATGGACCCTGTTACAGTTGTTGCTGTGGTTGGAGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCGGCACTGGGGTTCCTGGGGCGACTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2267#0 ------------------------------------------------------------ consensus_2267#2 ------------------------------------------------------------ consensus_2267#3 ------------------------------------------------------------ consensus_2267#1 AGGTGCTGTGGCGACCGTGGCCCTGGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTC 60 consensus_2267#0 ----------------------------------------------ATCACTGATGCTCC 14 consensus_2267#2 ------------------------------------------------------TGGTCC 6 consensus_2267#3 ------------------------------------------------------------ consensus_2267#1 AGCTGGGATAGCAGCAGGATCTGTAGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAG 120 consensus_2267#0 TCTA--AATATTGCCTTTTGTAAATATTTTTATTTAC--------CCCCACCAAATCTAA 64 consensus_2267#2 TCTA--AATATTGCCTTTTGTAAATATTTTTATTTACACCAAATCCCCCACCAAATCCAA 64 consensus_2267#3 --------------------------------------------GCACGAGGGAAAACAT 16 consensus_2267#1 CGGAGGAGGGGTGGCAGCAGGCAGCGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGG 180 * consensus_2267#0 TTTTTCAGT---TACAGTTGTTGCTGTGGTTGGAG---GTGCTGTGGCGACCGTGGCCCT 118 consensus_2267#2 GAAACCAGG---TACAGTTGTTGCTGTGGTTGGAG---GTGCTGTGGCGACCGTGGCCCT 118 consensus_2267#3 GGACCCTGT---TACAGTTGTTGCTGTGGTTGGAG---GTGCTGTGGCGACCGTGGCCCT 70 consensus_2267#1 TCTGTCGGTGGCCACCAATGTGGTCCTGGCTGGTGCTGGTGCTGTGGCGACCGTGGCCCT 240 * * ** *** * *** *** * ********************** consensus_2267#0 GGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGT 178 consensus_2267#2 GGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGT 178 consensus_2267#3 GGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGT 130 consensus_2267#1 GGCTCCAGTGGCTCTGGGGGCTGCAGGCTTCACTTCAGCTGGGATAGCAGCAGGATCTGT 300 ************************************************************ consensus_2267#0 AGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAG 238 consensus_2267#2 AGCTGCTAAGATGATGTCTGCTGCTGCGGTTGCCAACGGAGGAGGNGTGGCAGCAGGCAG 238 consensus_2267#3 AGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAG 190 consensus_2267#1 AGCTGCTAAGATGATGTCTGTTACTGCGGTTGCCAGCGGAGGAGGGGTGGCAGCAGGCAG 360 ******************** * ************ ********* ************** consensus_2267#0 CGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGT 298 consensus_2267#2 CGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGCGGCAACCAATGTGGC 298 consensus_2267#3 CGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGT 250 consensus_2267#1 CGCGGTGGCTGTTTTGCAGTCAGCGGGTATGGCCGGTCTGTCGGTGGCCACCAATGTGGT 420 ******************************************** *** ********** consensus_2267#0 CCTGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCGGCACTGGGGTTCCTGGGGCGACT 358 consensus_2267#2 CCTGGCTGGTGCTGGTGC------------------GGCATTGGGGTTCCTGGGGCGACT 340 consensus_2267#3 CCTGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCGGCACTGGGGTTCCTGGGGCGACT 310 consensus_2267#1 CCTGGCTGGTGCTGGTGCTGGTGC------------GGCAC------------------- 449 ****************** **** consensus_2267#0 GTTCTGAAAAAAAAAAATTTGAGGGTCGAATGTTCACCCAAAGATTCTAAAGTCAAAGCT 418 consensus_2267#2 GC---------------------------------------------------------- 342 consensus_2267#3 GT---------------------------------------------------------- 312 consensus_2267#1 ------------------------------------------------------------ consensus_2267#0 GGAAGAATTTTCAGTGAAAATTTATCGTTTTCCT 452 consensus_2267#2 ---------------------------------- consensus_2267#3 ---------------------------------- consensus_2267#1 ---------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |