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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence
[AGTACTGCTGGCGGGAGCGTCTCTCTCAGCTGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGCCGGCGTGACGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGATGGGTGGATATACAGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGGACTTGGTTTGCGACAATGGATACAAAGTCCCACTGAGCACCTCCGTCCACTACCTCGGTGTGCTCGTGGGGGCGTTCCTCTCGGGCCAGATGTCGGACAGATATGGAAGGAGACCGGCGCTGTTTTTCATGATGGCTCTCCAGACTGTTACGATCACAGCACAGATTTTCTCCCCAAACTGGGAGATCTTCACCTTCATCTACTTCTTTGTTGGGGCAGGAGGATTTTCCAACTACATCATTGCGTTTGTTCTGGGTACGGAAACACTAAGCCCCAAAGCCAGAGTGGTCTTCTGCTCCCTCGGGGTTTTCATGTGCTCTGCTCTGGGCTACATGATGATGCCGGCGGGGGCCTATTTTCTCCGTGAATGGAGGCTGTTGTTGATAGCTATGGCCGCCTCTGGTGTCATCTACATCCCTCTGTGGTGGATCCTTCCAGAA]
[+] EMBL CA591518 [AGTACTGCTGGCGGGAGCGTCTCTCTCAGCTGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGCCGGCGTGACGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGATGGGTGGATATACAGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGGACTTGGTTTGCGACAATGGATACAAAGTCCCACTGAGCACCTCCGTCCACTACCTCGGTGTGCTCGTGGGGGCGTTCCTCTCGGGCCAGATGTCGGACAGATATGGAAGGAGACCGGCGCTGTTTTTCATGATGGCTCTCCAGACTGTTACGATCACAGCACAGATTTTCTCCCCAAACTGGGAGATCTTCACCTTCATCTACTTCTTTGTTGGGGCAGGAGGATTTTCCAACTACATCATTGCGTTTGTTCTGGGTACGGAAACACTAAGCCCCAAAGCCAGAGTGGTCTTCTGCTCCCTCGGGGTTTTCATGTGCTCTGCTCTGGGCTACATGATGATGCCGGCGGGGGCCTATTTTCTCCGTGAATGGAGGCTGTTGTTGATAGCTATGGCCGCCTCTGGTGTCATCTACATCCCTCTGTGGTGGATCCTTCCAGAA]
consensusID : consensus_2268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 771 fasta sequence
[ATCAAAATGGTGATTTTAAGGAGGCGGTTTTAGTGGAGGGTTGTTTGAGGTATGGTGGAAGGGGAGGTGTGCTCCGTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGGAGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGGTAATGGGTGATTCAAAAATTCGAGATTATGACACGATAACCTCTTTTCTCGGGGACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATGGATTTATCGGCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATTCCCCCGAAATACAATATCAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGGCGGCGTGAGGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGATGGGTGGATATACGGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGGACTTGGTTTGGGGACATGGATACAAAGTCCCACTGAGCACCTCCGGCCACTACCTCGGGGGGGGTCGGGGGGCGGTCCTCTCGGCCAAATGTCGACAGAAATGGGAGGAAA]
[+] EMBL CA590157 [ATCAAAATGGTGATTTTAAGGAGGCGGTTTTAGTGGAGGGTTGTTTGAGGTATGGTGGAAGGGGAGGTGTGCTCCGTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGGAGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGGTAATGGGTGATTCAAAAATTCGAGGTTATGACACGATAACCTCTTTTCTCGGGGACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATGGATTTATCGGCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATTCCCCCGAAATACAATATCAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGCCGGCGTGACGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGATGGGTGGATA ]
[+] EMBL FR0059090 [ TGTGCTCCGTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGGAGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGGTAATGGGTGATTCAAAAATTCGAGATTATGACACGATAACCTCTTTTCTCGGGGACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATGGATTTATCGG ]
[+] EMBL CA589525 [ GTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGGAGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGGTAATGGGTGATTCAAAAATTCGAGATTATGACACGATAACCTCTTTTCTCGGGGACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATGGATTTATCGGCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATTCCCCCGAAATACAATATCAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGGCGGCGTGAGGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGATGGGTGGATATACGGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGGACTTGGTTTGGCGACATGGATACAAAGTCCCACTGAGCACCTCC ]
[+] EMBL CA588107 [ GTGTCCTCATTTTCTGTAGGA CTTCGAACAGCTGGCGGGAGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGGTAATGGGTGATTCAAAGATTCGAGATTATGACACGATAACCTCTTTTCTCGGGGACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATGGATTTATCGGCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATTCCCCCGAAATACAATATCAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGGCGGCGTGAGGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTTGTCCCGCACGTGGACGTGAACGTCTCCCGCATCCCACCGGAGAAGGGGCTGGATGGGTGAATATACAGTAAAGACATATACCCGTCAAGCATTGTCTCGGAGTGGGACTTGGTTTGCGACCATGGATACAAAGTCCC CTGAGCACCTCCGGCCACTACCTCGGGGGGGGTCGGGGGGCGGTCCTCTCGGCCAAATGTCGACAGAAATGGGAGGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2268#0 ------------------------------------------------------------
consensus_2268#1 ATCAAAATGGTGATTTTAAGGAGGCGGTTTTAGTGGAGGGTTGTTTGAGGTATGGTGGAA 60
consensus_2268#0 ---------------------------------------------AGTACTGCTGGCGGG 15
consensus_2268#1 GGGGAGGTGTGCTCCGTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGG 120
***************
consensus_2268#0 AGCGTCTCTCTCAGCTGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGAT 75
consensus_2268#1 AGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGAT 180
************** ********************************************
consensus_2268#0 CTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTC 135
consensus_2268#1 CTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTC 240
************************************************************
consensus_2268#0 TCAAG-CGAGGCATGGAGGAACGTCACGATACC----CATGGAAACCGTCGCCGGCGTGA 190
consensus_2268#1 TCAAGGTAATGGGTGATTCAAAAATTCGAGATTATGACACGATAACCTCTTTTCTCGGGG 300
***** * * ** ** *** * ** * **** ** *
consensus_2268#0 CGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCG 250
consensus_2268#1 ACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATG 360
* * ** * * *** * ** * * * * * ** * *
consensus_2268#0 AGGTCGTCCCGCACGTGGA-CGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGAT 309
consensus_2268#1 GATTTATCG-GCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATT 419
* ** ** * * * * * **** * ****** ** * ***** *
consensus_2268#0 GGGTGGATATACAGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGGACTTGGTT 369
consensus_2268#1 CCCCCGAAATACA----------ATATCAGCGAGGCAT--------GGAGGAAC------ 455
** ***** *** *** * **** * ** **
consensus_2268#0 TGCGACAATGGATACAAAGTCCCACTGAGCACCTCCGTCCACTACCTCGGTGTGCTCGTG 429
consensus_2268#1 -GTCACGATACCCATGGAAACC-----GTCGGCGGCGTGAGGAAGCGCAGC-TCTTGCTG 508
* ** ** * * ** * * *** * * * * * * **
consensus_2268#0 GGGGCGTTCCTCTCGGGCCAGATGTCGGACAGATATGGAAGGAGACCGGCGCTGTTTTTC 489
consensus_2268#1 GAGGC-------TCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGC 561
* *** ** ** * * * *** * * * ** ** * ** *
consensus_2268#0 ATGATGGCTCTCCAGACTGTTACGATCACAGCACAGATTTTCTCCCCAAACTGGGAGATC 549
consensus_2268#1 ACGTGGACGTGAACGTCTCCCGC-ATTCCAACGGAGAAGTGT---CTGGATGGGTGGATA 617
* * * * * ** * ** ** * *** * * * ** ***
consensus_2268#0 TTCACCTTCATCTACTTCTTTGTTGGGGCAGGAGGATTTTCCAACTACATCATTGCGTTT 609
consensus_2268#1 TACGG-TAAAGACATATACCAGTCA-------AGCATTGTCT-----CGGAGTGGGACTT 664
* * * * * * ** ** *** ** * * * **
consensus_2268#0 GTTCTGGGTACGGAAACACTAAGCCCCAAAGCCAGAGTGGTCTTCTGCTCCCTCGGGGTT 669
consensus_2268#1 GGTTTGGGGACATGGATACAAAGTCCCACTG--AGCACCTCCGGCCACTACCTCGGGGGG 722
* * **** ** * ** *** **** * ** * * ** ********
consensus_2268#0 --TTCATGTGCTCTGCTCTGGGCTACATGATGATGCCGGCGGGGGCCTATTTTCTCCGTG 727
consensus_2268#1 GGTCGGGGGGCGGTCCTCTCGGCCAAATGTCGACAGAAATGGGAGGAAA----------- 771
* * ** * **** *** * *** ** *** * *
consensus_2268#0 AATGGAGGCTGTTGTTGATAGCTATGGCCGCCTCTGGTGTCATCTACATCCCTCTGTGGT 787
consensus_2268#1 ------------------------------------------------------------
consensus_2268#0 GGATCCTTCCAGAA 801
consensus_2268#1 --------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |