These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 630 fasta sequence [CGGAGGGATGTAAACAGGCTCGGATCTGCTGCTGCTCATCGACCGCTCTTTACTCATCGATACCGGGCCAAACGCCTGGCGTCGCGGCTGGGATCTGCTTCAACGCCACACTTGGCCGATACTGCAACCCTAATTAAAACGGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGACCTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGCGCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCAGCAGGCCAGCTCTCTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAGAAAGTCTGCACGTACGAGCAGGCCAGAGCTTTCTTCCAGGACTCCTATCGTACGGATATCTTCTGGGCCGTCTATGTTGACGGGGACCAGTGCGCGGAGAAGCCCTGCAAGAACGGAGCCATGTGCTCGGACAGCGTGGGAGGCTACGACTGCGTCTGCAAGTCGGGTTTCACGGGGGGCCACTGTGAAAAAGACGAGACCCTGTGTGTCGTGGACTCGGACAAGGGCTGCTCCCAGTTCTGTAAACCGGGCTACACATCTTTTGTGTGC] [+] EMBL BU804983 [CGGAGGGATGTAAACAGGCTCGGATCTGCTGCTGCTCATCGACCGCTCTTTACTCATCGATACCGGGCCAAACGCCT CCGTCGCGGCTGGGATCTGCTTCAACGCCACACTTGGCCGATACTGCAACCCTAATTAAAACGGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGACCTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGCGCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCAGCAGGCCAGCTCTCTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAGAAAGTCTGCACGTACGAGCAGGCCAGAGCTTTCTTCCAGGACTCCTATCGTACGGATATCTTCTGGGCCGTCTATGTTGACGGGGACCAGTGCGCGGAGAAGCCCTGCAAGAACGGAGCCATGTGCTCGGACAGCGTGGGAGGCTACGACTGCGTCTGCAAGTCGGGTTTCACGGGGGGCCACTGTGAAAAAGACGAGACCCTGTGTGTCGTGGACTCGGACAAGGGCTGCTCCCAG ] [+] EMBL FR0063595 [ CGGATCTGCTGCTGCTCATCGACCGCTCTTTACTCATCGATACCGGGCCAAACGCCTGGCGGCGC GCTGGGATCTGCTTCAACGCCACACTTGGCCGATACTGCAACCCTAATTAAAACGGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGACCTCGGAGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGG ] [+] EMBL FR0063606 [ TCTGCTGCTGCTCATCGACCGCTCTTTACTCATCGATACCGGGCCAAACGCCTGGCGTCGCGGCTGGGATCTGCTTCAACGCCACACTTGGCCGATACTGCAACCCTAATTAAAACGGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGACCTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGCGCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCGGCAGGCCAGCTCTCTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAGAAAGGCTGCACGTACGAGCAGGCCAGA ] [+] EMBL CA333054 [ CTGCTCATCGACCGCTCTTTACTCATCGATACC GGCCAAACGCCT CCGTCGCGGCTGGGATCTGCTTCAACGCCACACTTGGCCGATACTGCAACCCTAATTAAAACGGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGACCTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGCGCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCAGCAGGCCAGCTCTCTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAGAAAGTCTGCACGTACGAGCAGGCCAGAGCTTTCTTCCAGGACTCCTATCGTACGGATATCTTCTGGGCCGTCTATGTTGACGGGGACCAGTGCGCGGAGAAGCCCTGCAAGAACGGAGCCATGTGCTCGGACAGCGTGGGAGGCTACGACTGCGTCTGCAAGTCGGGTTTCACGGGGGTCCACTGTGAAAAAGACGAGACCCTGTGTGTCGTGGACTCGGACAAGGGCTGCTCCCAGTTCTGTAAACCGGGCTACACATCTTTTGTGTGC] consensusID : consensus_2273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [GCTGGAAACTCGATAACAGGGTTATCACGCAGTTACTGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGACCTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGCGCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCAGCAGGCCAGCTCTCTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAGAAAGTCTGCACGTACGAGCAGGCCAGAGCTTTCTTCCAGGACTCCTATCGTACGGATATCTTCTGGGCCGTCTATGTTGACGGGGACCAGTGCGCGGAGAAGCCCTGCAAGAACGGAGCCATGTGCTCGGACAGCGTGGGAGGCTACGACTGCGTCTGCAAGTCGGGTTTCACGGGGGTCCACTGTGAAAAAGACGAGACCCCGTGTGTCGTGGACTCGGACAAGGGCTGCTCCCAGTTCTGTAAACCGGGCTACACATCTTTTGTGTGCTCATGTGCTCAGGGATGGAAAATCAGCAGTTCCGACAGGACCAAGTGTGTACCCACAGGGAGATTCCCCTGTGGGAAGGTC] [+] EMBL BU804565 [GCTGGAAACTCGATAACAGGGTTATCACGCAGTTACTGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGACCTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGCGCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCAGCAGGCCAGCTCTCTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAGAAAGTCTGCACGTACGAGCAGGCCAGAGCTTTCTTCCAGGACTCCTATCGTACGGATATCTTCTGGGCCGTCTATGTTGACGGGGACCAGTGCGCGGAGAAGCCCTGCAAGAACGGAGCCATGTGCTCGGACAGCGTGGGAGGCTACGACTGCGTCTGCAAGTCGGGTTTCACGGGGGTCCACTGTGAAAAAGACGAGACCCCGTGTGTCGTGGACTCGGACAAGGGCTGCTCCCAGTTCTGTAAACCGGGCTACACATCTTTTGTGTGCTCATGTGCTCAGGGATGGAAAATCAGCAGTTCCGACAGGACCAAGTGTGTACCCACAGGGAGATTCCCCTGTGGGAAGGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2273#0 CGGAGGGATGTAAACAGGCTCGGATCTGCTGCTGCTCATCGACCGCTCTTTACTCATCGA 60 consensus_2273#1 ------------------------------------------------------------ consensus_2273#0 TACCGGGCCAAACGCCTGGCGTCGCGGCTGGGATCTGCTTCAACGCCACACTTGGCCGAT 120 consensus_2273#1 ------------------------------------------GCTGGAAACTCGAT-AAC 17 * * *** * * consensus_2273#0 ACTGCAACCCTAATTAAAACGGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGAC 180 consensus_2273#1 AGGGTTATCACG-CAGTTACTGAATCACTGTTTCGCCAACCTCTTGACTCGGGTCGTGAC 76 * * * * ** *************************************** consensus_2273#0 CTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGC 240 consensus_2273#1 CTCGGTGTCACCATGTGCTCCTCCACCACGTGCGCTGCCCTGCTGTGTCTGCTGGCGGGC 136 ************************************************************ consensus_2273#0 GCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCAGCAGGCCAGCTCT 300 consensus_2273#1 GCTGTGGCCGCCATCCGGGGTCACCAGTCAGTCTTCCTGGACAAGCAGCAGGCCAGCTCT 196 ************************************************************ consensus_2273#0 CTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAG 360 consensus_2273#1 CTGATCTCCCGTCAGAAGAGGGACGCCGCAGGCTCCACGCTGGAGAAGGTCTGCATGGAG 256 ************************************************************ consensus_2273#0 AAAGTCTGCACGTACGAGCAGGCCAGAGCTTTCTTCCAGGACTCCTATCGTACGGATATC 420 consensus_2273#1 AAAGTCTGCACGTACGAGCAGGCCAGAGCTTTCTTCCAGGACTCCTATCGTACGGATATC 316 ************************************************************ consensus_2273#0 TTCTGGGCCGTCTATGTTGACGGGGACCAGTGCGCGGAGAAGCCCTGCAAGAACGGAGCC 480 consensus_2273#1 TTCTGGGCCGTCTATGTTGACGGGGACCAGTGCGCGGAGAAGCCCTGCAAGAACGGAGCC 376 ************************************************************ consensus_2273#0 ATGTGCTCGGACAGCGTGGGAGGCTACGACTGCGTCTGCAAGTCGGGTTTCACGGGGGGC 540 consensus_2273#1 ATGTGCTCGGACAGCGTGGGAGGCTACGACTGCGTCTGCAAGTCGGGTTTCACGGGGGTC 436 ********************************************************** * consensus_2273#0 CACTGTGAAAAAGACGAGACCCTGTGTGTCGTGGACTCGGACAAGGGCTGCTCCCAGTTC 600 consensus_2273#1 CACTGTGAAAAAGACGAGACCCCGTGTGTCGTGGACTCGGACAAGGGCTGCTCCCAGTTC 496 ********************** ************************************* consensus_2273#0 TGTAAACCGGGCTACACATCTTTTGTGTGC------------------------------ 630 consensus_2273#1 TGTAAACCGGGCTACACATCTTTTGTGTGCTCATGTGCTCAGGGATGGAAAATCAGCAGT 556 ****************************** consensus_2273#0 --------------------------------------------------- consensus_2273#1 TCCGACAGGACCAAGTGTGTACCCACAGGGAGATTCCCCTGTGGGAAGGTC 607 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |