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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 746 fasta sequence
[TGGTAGGAACGCCGGTCCTAAGAGGCTTTAACTTCAGTCTGACGCCGAACGCGTTTGGATCATAGATGTCATCGAAGTCGAGAGTCCACGGTAAAGGTTCGCGGATGCCAACAGCAGAGGCCGCAACGGGCACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGTTGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGGGTCAGATTGAACTAATAGAGCAGCTGAAGACTGAAACTCTCCAGCAGCAGTTGCACCAACTACACTGGCTGCGCGGTCAGTTTGATGTCATCGCACATCAGCTGCAAAACAACAACAGCAACGACCTGAGCAACCAGCTGACCTGCTGTCTGGAGAAGTTGTCCTCTCTCAACATGACACCTGAAGAGACGCCCGACCTTCATTTCCTTGCTGACAGCCGCTCTCTGAAACAGGCTATCACTTCTTTTGGCTGCATCTCCGCTCAGCTTACTGAGGGTGTGTCCTCTCCAAACTCCGGCCACCAGCCAAGCCAGAGTTGTCCTGTTGCTGCAAAAATGCAGAAGATGGAGGATGGAACTCTGAAGCAGTGGCTGCTGGGATCTCGTCCAGCCAGCAGTCCTGAAACTGGATTTCAGGCCAGTAACAAGACTGAGGACTGGCTGTTT]
[+] EMBL CA591280 [TGGTAGGAACGCCGGTCCTAAGAGGCTTTAACTTCAGTCTGACGCCGAACGCCTTTGGATCATAGATGTCATCGAAGTCGAGAGTCCACGGTAAAGGTTCGCGGATGCCAACAGCAGAGGCCGCAACGGGCACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGTTGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGGGTCAGATTGAACTAATAGAGCAGCTGAAGACTGAAACTCTCCAGCAGCAGTTGCACCAACTACACTGGCTGCGCGGTCAGTTTGATGTCATCGCACATCAGCTGCAAAACAACAACAGCAACGACCTGAGCAACCAGCTGACCTGCTGTCTGGAGAAGTTGTCCTCTCTCAACATGACACCTGAAGAGACGCCCGTCCTTCATTTCCTTGCTGACAGCCGCTCTCTGAAACAGGCTATCACTTCTTTTGGCTGCATCTCCACT ]
[+] EMBL FR0059394 [ AAGAGGCTTTAACTTCAGTCTGACGCCGAACGCGTTTGGATCAGAGATGTCATCGAAGTCGAGAGTCCACGGTACAGGCTCGCGGATGCCAACAGCAGAGGCCGCAACGGGCACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGTTGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGGGTCAGATTGAACTAATAGAGCAGCTGAAGACTGAAACTCTCCAGCAGCAGGTGCACCAACTACCCTGGCTTCGCGGTCAGTTTGATGTCATCGCACATCAAGTGCAAAACAACAACAGGCACGACC ]
[+] EMBL CA591499 [ GTGTTTGGATCATAGATGTCATCGAAGTCGAGAGTCCACGGTAAAGGTTCGCGGATGCCAACAGCAGAGGCCGCAACGGGCACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGTTGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGGGTCAGATTGAACTAATAGAGCAGCTGAAGACTGAAACTCTCCAGCAGCAGTTGCACCAACTACACTGGCTGCGCGGTCAGTTTGATGTCATCGCACATCAGCTGCAAAACAACAACAGCAACGACCTGAGCAACCAGCTGACCTGCTGTCTGGAGAAGTTGTCCTCTCTCAACATGACACCTGAAGAGACGCCCGACCTTCATTTCCTTGCTGACAGCCGCTCTCTGAAACAGGCTATCACTTCTTTTGGCTGCATCTCCGCTCAGCTTACTGAGGGTGTGTCCTCTCCAAACTCCGGCCACCAGCCAAGCCAGAGTTGTCCTGTTGCTGCAAAAATGCAGAAGATGGAGGATGGAACTCTGAAGCAGTGGCTGCTGGGATCTCGTCCAGCCAGCAGTCCTGAAACTGGATTTCAGGCCAGTAACAAGACTGAGGACTGGCTGTTT]
consensusID : consensus_2285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence
[TGCTGAAACCGTGCGACTGGTGCTTGTTTTTTTGATGCTGAGGATGCCAACAGCAGAGGCCGCAACGGCACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGTTGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGGGTCAGATTGAACTAATAGAGCAGCTGAAGACTGAAACTCTCCAGCAGCAGTTGCACCAACTACACTGGCTGCGCGGTCAGGTTGATGTCATCGCACATCAGCTGCAAAACAATAACAGCAACGACCTGAGCAACCAGCTGACCTGCTGGCTGGAGAAGGTGTCCTCTCTCAACATGACACCCT]
[+] EMBL FR0059678 [TGCTGAAACCGTGCGACTGGTGCTTGTTTTTTTGATGCTGAGGATGCCAACAGCAGAGGCCGCAACGGCACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGTTGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGGGTCAGATTGAACTAATAGAGCAGCTGAAGACTGAAACTCTCCAGCAGCAGTTGCACCAACTACACTGGCTGCGCGGTCAGGTTGATGTCATCGCACATCAGCTGCAAAACAATAACAGCAACGACCTGAGCAACCAGCTGACCTGCTGGCTGGAGAAGGTGTCCTCTCTCAACATGACACCCT]
consensusID : consensus_2285#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence
[TGAGGATGCCAACAGCAGGGGCCCCCTCGGCCACCTTTAAAGCTCCCACCAACCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGACAGTACAGCACCTGAGGGAAAATACCCGAGAGGCGCGCCTGCAGTTGCAGAGCTGGATGAGTCGTCAGCAGAAGGCTCTGCGCTTCGGAGAGGATTGTCTGCTGGGTCGAGATTTGAACTAATAGAGCAGCTGATGACTGAAACTTCTCCAGCTGCAGGGGC]
[+] EMBL FR0059649 [TGAGGATGCCAACAGCAGGGGCCCCCTCGGCCACCTTTAAAGCTCCCACCAACCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGACAGTACAGCACCTGAGGGAAAATACCCGAGAGGCGCGCCTGCAGTTGCAGAGCTGGATGAGTCGTCAGCAGAAGGCTCTGCGCTTCGGAGAGGATTGTCTGCTGGGTCGAGATTTGAACTAATAGAGCAGCTGATGACTGAAACTTCTCCAGCTGCAGGGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2285#0 TGGTAGGAACGCCGGTCCTAAGAGGCTTTAACTTCAGTCTGACGCCGAACGCGTTTGGAT 60
consensus_2285#1 ------------------------------------------------------------
consensus_2285#2 ------------------------------------------------------------
consensus_2285#0 CATAGATGTCATCGAAGTCGAGAGTCCACGGTAAAGGTTCGCGGATGCCAACAGCAGAGG 120
consensus_2285#1 TGCTGAAACCGTGCGACTGGTGCTTGTTTTTTTGATGCT-GAGGATGCCAACAGCAGAGG 59
consensus_2285#2 ---------------------------------------TGAGGATGCCAACAGCAGGGG 21
* *************** **
consensus_2285#0 CCGCAACGGGCACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCA 180
consensus_2285#1 CCGCAACGG-CACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCA 118
consensus_2285#2 CCCCCTCGGCCACCTTTAAAGC-TCCCACCAACCCCAAGATCAGCTGCAGAATGCCATCA 80
** * *** ****** ** * * *** *** ***************************
consensus_2285#0 ACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGT 240
consensus_2285#1 ACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGT 178
consensus_2285#2 ACACTGTGGTGAAGACAGTACAGCACCTGAGGGAAAATACCCGAGAGGCGCGCCTGCAGT 140
************** *** ***** ********************** ***********
consensus_2285#0 TGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGG 300
consensus_2285#1 TGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGG 238
consensus_2285#2 TGCAGAGCTGGATGAGTCGTCAGCAGAAGGCTCTGCGCTTCGGAGAGGATTGTCTGCTGG 200
********** ************** ************ * ****** *** *******
consensus_2285#0 GTCAGA--TTGAACTAATAGAGCAGCTGAAGACTGAAACT-CTCCAGCAGCAGTTGCACC 357
consensus_2285#1 GTCAGA--TTGAACTAATAGAGCAGCTGAAGACTGAAACT-CTCCAGCAGCAGTTGCACC 295
consensus_2285#2 GTCGAGATTTGAACTAATAGAGCAGCTGATGACTGAAACTTCTCCAGCTGCAGGGGC--- 257
*** ********************* ********** ******* **** **
consensus_2285#0 AACTACACTGGCTGCGCGGTCAGTTTGATGTCATCGCACATCAGCTGCAAAACAACAACA 417
consensus_2285#1 AACTACACTGGCTGCGCGGTCAGGTTGATGTCATCGCACATCAGCTGCAAAACAATAACA 355
consensus_2285#2 ------------------------------------------------------------
consensus_2285#0 GCAACGACCTGAGCAACCAGCTGACCTGCTGTCTGGAGAAGTTGTCCTCTCTCAACATGA 477
consensus_2285#1 GCAACGACCTGAGCAACCAGCTGACCTGCTGGCTGGAGAAGGTGTCCTCTCTCAACATGA 415
consensus_2285#2 ------------------------------------------------------------
consensus_2285#0 CACCTGAAGAGACGCCCGACCTTCATTTCCTTGCTGACAGCCGCTCTCTGAAACAGGCTA 537
consensus_2285#1 CACCCT------------------------------------------------------ 421
consensus_2285#2 ------------------------------------------------------------
consensus_2285#0 TCACTTCTTTTGGCTGCATCTCCGCTCAGCTTACTGAGGGTGTGTCCTCTCCAAACTCCG 597
consensus_2285#1 ------------------------------------------------------------
consensus_2285#2 ------------------------------------------------------------
consensus_2285#0 GCCACCAGCCAAGCCAGAGTTGTCCTGTTGCTGCAAAAATGCAGAAGATGGAGGATGGAA 657
consensus_2285#1 ------------------------------------------------------------
consensus_2285#2 ------------------------------------------------------------
consensus_2285#0 CTCTGAAGCAGTGGCTGCTGGGATCTCGTCCAGCCAGCAGTCCTGAAACTGGATTTCAGG 717
consensus_2285#1 ------------------------------------------------------------
consensus_2285#2 ------------------------------------------------------------
consensus_2285#0 CCAGTAACAAGACTGAGGACTGGCTGTTT 746
consensus_2285#1 -----------------------------
consensus_2285#2 -----------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |