These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 746 fasta sequence [TGGTAGGAACGCCGGTCCTAAGAGGCTTTAACTTCAGTCTGACGCCGAACGCGTTTGGATCATAGATGTCATCGAAGTCGAGAGTCCACGGTAAAGGTTCGCGGATGCCAACAGCAGAGGCCGCAACGGGCACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGTTGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGGGTCAGATTGAACTAATAGAGCAGCTGAAGACTGAAACTCTCCAGCAGCAGTTGCACCAACTACACTGGCTGCGCGGTCAGTTTGATGTCATCGCACATCAGCTGCAAAACAACAACAGCAACGACCTGAGCAACCAGCTGACCTGCTGTCTGGAGAAGTTGTCCTCTCTCAACATGACACCTGAAGAGACGCCCGACCTTCATTTCCTTGCTGACAGCCGCTCTCTGAAACAGGCTATCACTTCTTTTGGCTGCATCTCCGCTCAGCTTACTGAGGGTGTGTCCTCTCCAAACTCCGGCCACCAGCCAAGCCAGAGTTGTCCTGTTGCTGCAAAAATGCAGAAGATGGAGGATGGAACTCTGAAGCAGTGGCTGCTGGGATCTCGTCCAGCCAGCAGTCCTGAAACTGGATTTCAGGCCAGTAACAAGACTGAGGACTGGCTGTTT] [+] EMBL CA591280 [TGGTAGGAACGCCGGTCCTAAGAGGCTTTAACTTCAGTCTGACGCCGAACGCCTTTGGATCATAGATGTCATCGAAGTCGAGAGTCCACGGTAAAGGTTCGCGGATGCCAACAGCAGAGGCCGCAACGGGCACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGTTGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGGGTCAGATTGAACTAATAGAGCAGCTGAAGACTGAAACTCTCCAGCAGCAGTTGCACCAACTACACTGGCTGCGCGGTCAGTTTGATGTCATCGCACATCAGCTGCAAAACAACAACAGCAACGACCTGAGCAACCAGCTGACCTGCTGTCTGGAGAAGTTGTCCTCTCTCAACATGACACCTGAAGAGACGCCCGTCCTTCATTTCCTTGCTGACAGCCGCTCTCTGAAACAGGCTATCACTTCTTTTGGCTGCATCTCCACT ] [+] EMBL FR0059394 [ AAGAGGCTTTAACTTCAGTCTGACGCCGAACGCGTTTGGATCAGAGATGTCATCGAAGTCGAGAGTCCACGGTACAGGCTCGCGGATGCCAACAGCAGAGGCCGCAACGGGCACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGTTGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGGGTCAGATTGAACTAATAGAGCAGCTGAAGACTGAAACTCTCCAGCAGCAGGTGCACCAACTACCCTGGCTTCGCGGTCAGTTTGATGTCATCGCACATCAAGTGCAAAACAACAACAGGCACGACC ] [+] EMBL CA591499 [ GTGTTTGGATCATAGATGTCATCGAAGTCGAGAGTCCACGGTAAAGGTTCGCGGATGCCAACAGCAGAGGCCGCAACGGGCACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGTTGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGGGTCAGATTGAACTAATAGAGCAGCTGAAGACTGAAACTCTCCAGCAGCAGTTGCACCAACTACACTGGCTGCGCGGTCAGTTTGATGTCATCGCACATCAGCTGCAAAACAACAACAGCAACGACCTGAGCAACCAGCTGACCTGCTGTCTGGAGAAGTTGTCCTCTCTCAACATGACACCTGAAGAGACGCCCGACCTTCATTTCCTTGCTGACAGCCGCTCTCTGAAACAGGCTATCACTTCTTTTGGCTGCATCTCCGCTCAGCTTACTGAGGGTGTGTCCTCTCCAAACTCCGGCCACCAGCCAAGCCAGAGTTGTCCTGTTGCTGCAAAAATGCAGAAGATGGAGGATGGAACTCTGAAGCAGTGGCTGCTGGGATCTCGTCCAGCCAGCAGTCCTGAAACTGGATTTCAGGCCAGTAACAAGACTGAGGACTGGCTGTTT] consensusID : consensus_2285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [TGCTGAAACCGTGCGACTGGTGCTTGTTTTTTTGATGCTGAGGATGCCAACAGCAGAGGCCGCAACGGCACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGTTGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGGGTCAGATTGAACTAATAGAGCAGCTGAAGACTGAAACTCTCCAGCAGCAGTTGCACCAACTACACTGGCTGCGCGGTCAGGTTGATGTCATCGCACATCAGCTGCAAAACAATAACAGCAACGACCTGAGCAACCAGCTGACCTGCTGGCTGGAGAAGGTGTCCTCTCTCAACATGACACCCT] [+] EMBL FR0059678 [TGCTGAAACCGTGCGACTGGTGCTTGTTTTTTTGATGCTGAGGATGCCAACAGCAGAGGCCGCAACGGCACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGTTGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGGGTCAGATTGAACTAATAGAGCAGCTGAAGACTGAAACTCTCCAGCAGCAGTTGCACCAACTACACTGGCTGCGCGGTCAGGTTGATGTCATCGCACATCAGCTGCAAAACAATAACAGCAACGACCTGAGCAACCAGCTGACCTGCTGGCTGGAGAAGGTGTCCTCTCTCAACATGACACCCT] consensusID : consensus_2285#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence [TGAGGATGCCAACAGCAGGGGCCCCCTCGGCCACCTTTAAAGCTCCCACCAACCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGACAGTACAGCACCTGAGGGAAAATACCCGAGAGGCGCGCCTGCAGTTGCAGAGCTGGATGAGTCGTCAGCAGAAGGCTCTGCGCTTCGGAGAGGATTGTCTGCTGGGTCGAGATTTGAACTAATAGAGCAGCTGATGACTGAAACTTCTCCAGCTGCAGGGGC] [+] EMBL FR0059649 [TGAGGATGCCAACAGCAGGGGCCCCCTCGGCCACCTTTAAAGCTCCCACCAACCCCAAGATCAGCTGCAGAATGCCATCAACACTGTGGTGAAGACAGTACAGCACCTGAGGGAAAATACCCGAGAGGCGCGCCTGCAGTTGCAGAGCTGGATGAGTCGTCAGCAGAAGGCTCTGCGCTTCGGAGAGGATTGTCTGCTGGGTCGAGATTTGAACTAATAGAGCAGCTGATGACTGAAACTTCTCCAGCTGCAGGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2285#0 TGGTAGGAACGCCGGTCCTAAGAGGCTTTAACTTCAGTCTGACGCCGAACGCGTTTGGAT 60 consensus_2285#1 ------------------------------------------------------------ consensus_2285#2 ------------------------------------------------------------ consensus_2285#0 CATAGATGTCATCGAAGTCGAGAGTCCACGGTAAAGGTTCGCGGATGCCAACAGCAGAGG 120 consensus_2285#1 TGCTGAAACCGTGCGACTGGTGCTTGTTTTTTTGATGCT-GAGGATGCCAACAGCAGAGG 59 consensus_2285#2 ---------------------------------------TGAGGATGCCAACAGCAGGGG 21 * *************** ** consensus_2285#0 CCGCAACGGGCACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCA 180 consensus_2285#1 CCGCAACGG-CACCTTGAAGGTGTGCCAGCAAGCCCAAGATCAGCTGCAGAATGCCATCA 118 consensus_2285#2 CCCCCTCGGCCACCTTTAAAGC-TCCCACCAACCCCAAGATCAGCTGCAGAATGCCATCA 80 ** * *** ****** ** * * *** *** *************************** consensus_2285#0 ACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGT 240 consensus_2285#1 ACACTGTGGTGAAGGCAGAGCAGCAGCTGAGGGAAAATACCCGAGAGGTGCGCCTGCAGT 178 consensus_2285#2 ACACTGTGGTGAAGACAGTACAGCACCTGAGGGAAAATACCCGAGAGGCGCGCCTGCAGT 140 ************** *** ***** ********************** *********** consensus_2285#0 TGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGG 300 consensus_2285#1 TGCAGAGCTGCGTGAGTCGTCAGCAGGAGGCTCTGCGCTGCAGAGAGGTTTGGCTGCTGG 238 consensus_2285#2 TGCAGAGCTGGATGAGTCGTCAGCAGAAGGCTCTGCGCTTCGGAGAGGATTGTCTGCTGG 200 ********** ************** ************ * ****** *** ******* consensus_2285#0 GTCAGA--TTGAACTAATAGAGCAGCTGAAGACTGAAACT-CTCCAGCAGCAGTTGCACC 357 consensus_2285#1 GTCAGA--TTGAACTAATAGAGCAGCTGAAGACTGAAACT-CTCCAGCAGCAGTTGCACC 295 consensus_2285#2 GTCGAGATTTGAACTAATAGAGCAGCTGATGACTGAAACTTCTCCAGCTGCAGGGGC--- 257 *** ********************* ********** ******* **** ** consensus_2285#0 AACTACACTGGCTGCGCGGTCAGTTTGATGTCATCGCACATCAGCTGCAAAACAACAACA 417 consensus_2285#1 AACTACACTGGCTGCGCGGTCAGGTTGATGTCATCGCACATCAGCTGCAAAACAATAACA 355 consensus_2285#2 ------------------------------------------------------------ consensus_2285#0 GCAACGACCTGAGCAACCAGCTGACCTGCTGTCTGGAGAAGTTGTCCTCTCTCAACATGA 477 consensus_2285#1 GCAACGACCTGAGCAACCAGCTGACCTGCTGGCTGGAGAAGGTGTCCTCTCTCAACATGA 415 consensus_2285#2 ------------------------------------------------------------ consensus_2285#0 CACCTGAAGAGACGCCCGACCTTCATTTCCTTGCTGACAGCCGCTCTCTGAAACAGGCTA 537 consensus_2285#1 CACCCT------------------------------------------------------ 421 consensus_2285#2 ------------------------------------------------------------ consensus_2285#0 TCACTTCTTTTGGCTGCATCTCCGCTCAGCTTACTGAGGGTGTGTCCTCTCCAAACTCCG 597 consensus_2285#1 ------------------------------------------------------------ consensus_2285#2 ------------------------------------------------------------ consensus_2285#0 GCCACCAGCCAAGCCAGAGTTGTCCTGTTGCTGCAAAAATGCAGAAGATGGAGGATGGAA 657 consensus_2285#1 ------------------------------------------------------------ consensus_2285#2 ------------------------------------------------------------ consensus_2285#0 CTCTGAAGCAGTGGCTGCTGGGATCTCGTCCAGCCAGCAGTCCTGAAACTGGATTTCAGG 717 consensus_2285#1 ------------------------------------------------------------ consensus_2285#2 ------------------------------------------------------------ consensus_2285#0 CCAGTAACAAGACTGAGGACTGGCTGTTT 746 consensus_2285#1 ----------------------------- consensus_2285#2 ----------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |