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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2292#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence
[AGATAACTTTCTTCTGTGTCTCTTCAGAATCATTGTCTATAATCAGTCACTGATCCTCAATGAGTCCAACCCTCCAACACAAGACCAGCAGCACACGCAGGCAGACGGGCTTCCTGAAGCTGGAGATCAGCAGTACAGAGCAGAATGGGTCGTGTGAGGGGGCTGTGGCCATCCTGGATGCCGGAGCCCAGTACGGCAAAGTGATTGACAGACGGGTCCGAGAGCTGTGTGTCCGCTCCGAGATCCTCCCTTTGGAGACGCCGGCCTTCGCCATCAGAGAGCAGGGCTACAGGGCAATCATCATCTCGGGTGGTCCGGCGTCTGTGTATGCAGAAGATGCCCCCTGGTTTGACCCCGCCATCTTCACCATGGGGAAGCCTGTCCTTGGCATTTGCTATGGGATGCAGATGATGAACAAAGTTTTTGGTGGCACCGTCCACAGGAAGAGTGTGAGGGAAGACGGAGTGTTCAACATCGCCCTGGACAACACCTGCTCTCTGTTCAGGGGCCTCCAGAAGGAGGAACTGGTCCTGCTGACACATGGAAATAGTGTGGATAAAGTAGCTGATGGGTTTAAAGTGGTGGGCCAGTCAGGCAACATCATAGCTGGCATCGCTAAT]
[+] EMBL CA332841 [AGATAACTTTCTTCTGTGTCTCTTCAGAATCATTGTCTATAATCAGTCACTGATCCTCAATGAGTCCAACCCTCCAACACAAGACCAGCAGCACACGCAGGCAGACGGGCTTCCTGAAGCTGGAGATCAGCAGTACAGAGCAGAATGGGTCGTGTGAGGGGGCTGTGGCCATCCTGGATGCCGGAGCCCAGTACGGCAAAGTGATTGACAGACGGGTCCGAGAGCTGTGTGTCCGCTCCGAGATCCTCCCTTTGGAGACGCCGGCCTTCGCCATCAGAGAGCAGGGCTACAGGGCAATCATCATCTCGGGTGGTCCGGCGTCTGTGTATGCAGAAGATGCCCCCTGGTTTGACCCCGCCATCTTCACCATGGGGAAGCCTGTCCTTGGCATTTGCTATGGGATGCAGATGATGAACAAAGTTTTTGGTGGCACCGTCCACAGGAAGAGTGTGAGGGAAGACGGAGTGTTCAACATCGCCCTGGACAACACCTGCTCTCTGTTCAGGGGCCTCCAGAAGGAGGAACTGGTCCTGCTGACACATGGAAATAGTGTGGATAAAGTAGCTGATGGGTTTAAAGTGGTGGGCCAGTCAGGCAACATCATAGCTGGCATCGCTAAT]
consensusID : consensus_2292#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 567 fasta sequence
[TATTGGTCACTCCAAGGCAACGGGAAGAGCTCATCCACAACACGGGGGGGGGCTATGGCTCTGGGCAACGGAAACAGCAAGCTGGAAATCAGCAGTACAGAGCAAAATGGGTCGTGTGAGGGGGCTGGGGCCATCCTGGATGCCGGAGCCCAGTACGGCAAAGGGATTGACAGACGGGTCCGAAAGCTGTGTGTCCGCTCCGAGATCCTCCCTTTGGAGACGCCGGCCTTCGCCATCAGAGAGCAGGGCTACAGGGCAATCATCATCTCGGGGGGTCCGGCGTCTGTGTATGCAGAAGATGCCCCCTGGTTTGACCCCGCCATCTTCACCATGGGGAAGCCTGTCCTTGGCATTTGCTATGGGATGCAGATGATGAACAAAGTTTTTGGTGGCACCGTCCACAGGAAGAGTGTGAGGGAAGACGGAGTGTTCAACATCGCCCTGGACAACACCTGCTCTCTGTTCAGGGGCCTCCAGACAGAGGAACTGGTCCTGCTGACACATGGAGATAGTGTGGATAAAGTAGCTGATGGGTTTAAAGTGGTGGCCCAGGCCAGGAACATCATA]
[+] EMBL FR0058072 [TATTGGTCACTCCAAGGCAACGGGAAGAGCTCATCCACAACACGGGGGGGGGCTATGGCTCTGGGCAACGGAAACAGCAAGCTGGAAATCAGCAGTACAGAGCAAAATGGGTCGTGTGAGGGGGCTGGGGCCATCCTGGATGCCGGAGCCCAGTACGGCAAAGGGATTGACAGACGGGTCCGAAAGCTGTGTGTCCGCTCCGAGATCCTCCCTTTGGAGACGCCGGCCTTCGCCATCAGAGAGCAGGGCTACAGGGCAATCATCATCTCGGGGGGTC ]
[+] EMBL FR0058234 [TATTGGTCACTCCAAGGCAACGGGAAGAGCTCATCCACAACACGGGGGGGGGCTATGGCTCTGGGCAACGGAAACAGCAAGCTGGAAATCAGCAGTACAGAGCAAAATGGGTCGTGTGAGGGGGCTGGGGCCATCCTGGATGCCGGAGCCCAGTACGGCAAAGGGATTGACAGACGGGTCCGAAAGCTGTGTGTCCGCTCCGAGATCCTCCCTTTGGAGACGCCGGCCTTCGCCATCAGAGAGCAGGGCTACAGGGCAATCATCATCTCGGGGGGTC ]
[+] EMBL CA590680 [ AGCTGGAGATCAGCGGTACAGAGCAGAATGGGTCGTGTGAGGGGGCTGTGGCCATCCTGGATGCCGGAGCCCAGTACGGCAAAGTGATTGACAGACGGGTCCGAGAGCTGTGTGTCCGCTCCGAGATCCTCCCTTTGGAGACTTTTTTCTTCGCCATCAGAGAGCAGGGCTACAGGGCAATCATCATCTCGGGTGGTCCGGCGTCTGTGTATGCAGAAGATGCCCCCTGGTTTGACCCCGCCATCTTCACCATGGGGAAGCCTGTCCTTGGCATTTGCTATGGGATGCAGATGATGAACAAAGTTTTTGGTGGCACCGTCCACAGGAAGAGTGTGAGGGAAGACGGAGTGTTCAACATCGCCCTGGACAACACCTGCTCTCTGTTCAGGGGCCTCCAGACAGAGGAACTGGTCCTGCTGACACATGGAGATAGTGTGGATAAAGTAGCTGATGGGTTTAAAGTGGTGGCCCAGGCCAGGAACATCATA]
consensusID : consensus_2292#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence
[ATGGCTCTGGGAACGGAGGGAGCATTTTGGAGATCAGCAGTACACACCCCAATNGGGCGGGNGAGGGGGCTGNGGCCATCCTGGATGCCGGAGCCCAGTACGGCAAAGTGATTGACAGACGGGTCCGAGAGCTGTGTGCCCGCTCCGAGATCCTCCCTTGGGAGACGCCGGGCTTCCGCCATCAGAGAGCAGGGCTACAGGGCAATCATCATCTCGGGTGGCCCGGCGGCTGCGAAAGCAGAAGAGGCCCCCTGGCTTGACCCCGCCAT]
[+] EMBL FR0058591 [ATGGCTCTGGGAACGGAGGGAGCATTTTGGAGATCAGCAGTACACACCCCAATNGGGCGGGNGAGGGGGCTGNGGCCATCCTGGATGCCGGAGCCCAGTACGGCAAAGTGATTGACAGACGGGTCCGAGAGCTGTGTGCCCGCTCCGAGATCCTCCCTTGGGAGACGCCGGGCTTCCGCCATCAGAGAGCAGGGCTACAGGGCAATCATCATCTCGGGTGGCCCGGCGGCTGCGAAAGCAGAAGAGGCCCCCTGGCTTGACCCCGCCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2292#1 -------------------------------------TATTGGTCACTCCAAGGCAACGG 23
consensus_2292#2 ------------------------------------------------------------
consensus_2292#0 AGATAACTTTCTTCTGTGTCTCTTCAGAATCATTGTCTATAATCAGTCACTGATCCTCAA 60
consensus_2292#1 GAAGAGCTCATCCACAACACGGGGGGGGGCTATGGCTCTGGGCAACGGAAACAGC-AAGC 82
consensus_2292#2 -------------------------------ATGGCTCTGGG-AACGGAGGGAGC-ATTT 27
consensus_2292#0 TGAGTCCAACCCTCCAACACAAGACCAGCAGCACACGCAGGCAGACGGGCTTCCTGAAGC 120
* * ** **** *
consensus_2292#1 TGGAAATCAGCAGTACAGAGCAAAATGGGTCGTGTGAGGGGGCTGGGGCCATCCTGGATG 142
consensus_2292#2 TGGAGATCAGCAGTACACACCCCAATNGGGCGGGNGAGGGGGCTGNGGCCATCCTGGATG 87
consensus_2292#0 TGGAGATCAGCAGTACAGAGCAGAATGGGTCGTGTGAGGGGGCTGTGGCCATCCTGGATG 180
**** ************ * * *** ** ** * ********** **************
consensus_2292#1 CCGGAGCCCAGTACGGCAAAGGGATTGACAGACGGGTCCGAAAGCTGTGTGTCCGCTCCG 202
consensus_2292#2 CCGGAGCCCAGTACGGCAAAGTGATTGACAGACGGGTCCGAGAGCTGTGTGCCCGCTCCG 147
consensus_2292#0 CCGGAGCCCAGTACGGCAAAGTGATTGACAGACGGGTCCGAGAGCTGTGTGTCCGCTCCG 240
********************* ******************* ********* ********
consensus_2292#1 AGATCCTCCCTTTGGAGACGCCGGCCTTC-GCCATCAGAGAGCAGGGCTACAGGGCAATC 261
consensus_2292#2 AGATCCTCCCTTGGGAGACGCCGGGCTTCCGCCATCAGAGAGCAGGGCTACAGGGCAATC 207
consensus_2292#0 AGATCCTCCCTTTGGAGACGCCGGCCTTC-GCCATCAGAGAGCAGGGCTACAGGGCAATC 299
************ *********** **** ******************************
consensus_2292#1 ATCATCTCGGGGGGTCCGGCGTCTGTGTATGCAGAAGATGCCCCCTGGTTTGACCCCGCC 321
consensus_2292#2 ATCATCTCGGGTGGCCCGGCGGCTGCGAAAGCAGAAGAGGCCCCCTGGCTTGACCCCGCC 267
consensus_2292#0 ATCATCTCGGGTGGTCCGGCGTCTGTGTATGCAGAAGATGCCCCCTGGTTTGACCCCGCC 359
*********** ** ****** *** * * ******** ********* ***********
consensus_2292#1 ATCTTCACCATGGGGAAGCCTGTCCTTGGCATTTGCTATGGGATGCAGATGATGAACAAA 381
consensus_2292#2 AT---------------------------------------------------------- 269
consensus_2292#0 ATCTTCACCATGGGGAAGCCTGTCCTTGGCATTTGCTATGGGATGCAGATGATGAACAAA 419
**
consensus_2292#1 GTTTTTGGTGGCACCGTCCACAGGAAGAGTGTGAGGGAAGACGGAGTGTTCAACATCGCC 441
consensus_2292#2 ------------------------------------------------------------
consensus_2292#0 GTTTTTGGTGGCACCGTCCACAGGAAGAGTGTGAGGGAAGACGGAGTGTTCAACATCGCC 479
consensus_2292#1 CTGGACAACACCTGCTCTCTGTTCAGGGGCCTCCAGACAGAGGAACTGGTCCTGCTGACA 501
consensus_2292#2 ------------------------------------------------------------
consensus_2292#0 CTGGACAACACCTGCTCTCTGTTCAGGGGCCTCCAGAAGGAGGAACTGGTCCTGCTGACA 539
consensus_2292#1 CATGGAGATAGTGTGGATAAAGTAGCTGATGGGTTTAAAGTGGTGGCCCAGGCCAGGAAC 561
consensus_2292#2 ------------------------------------------------------------
consensus_2292#0 CATGGAAATAGTGTGGATAAAGTAGCTGATGGGTTTAAAGTGGTGGGCCAGTCAGGCAAC 599
consensus_2292#1 ATCATA--------------- 567
consensus_2292#2 ---------------------
consensus_2292#0 ATCATAGCTGGCATCGCTAAT 620
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |