These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [CCGTAAATACAGACGAGCCAAATTTTTCTTACGACTTCTTCTCACTTTTCTCCGCGGGTGAACCTAAGTAGCCATGACTCGTACCAAGCAGACTGCCCGTAAATCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACGAAGGCAGCTCGCAAGAGTGCCCCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCAGGCACTGTGGCTCTGCGTGAGATCCGTCGTTACCAGAAGTCCACCGAGTTGCTGATCCGCAAGCTTCCATTCCAGCGCCTGGTGAGAGAAATCGCCCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCAGCCATCGGAGCTCTGCAGGAGGCCAGCGAGGCCTACCTGGTGGGTCTGTTTGAGGACACCAACCTGTGTGCCATCCACGCCAAACGTGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGTATCCGTGGTGAACGTGCTTAAGCGTTCCACGTGGTCCCTCCTCCTTTTCACTTCCTCCTGCCCTTCTGTCACCGATCTGTCTCTCCGTCCCTCGTCCCCATCACCCGCCTTCCCCGCTCTTCCTTCCTGTGTTAGTAGTATGTAGAGGAAAACTGATTATATTATGAATAAAGTGTATAGTTCTGCTTTTCTTAGTGCTTTTGACAAAAACACTTCTCGGGTACTCTTTCATGTGCATGTGCGTGCTGAGTTCTGGTGAT] [+] EMBL CA846176 [CCGTAAATACAGACGAGCCAAATTTTTCTTACGACTTCTTCTCACTTTTCTCCGCGGGTGAACCTAAGTAGCCATGACTCGTACCAAGCAGACTGCCCGTAAATCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACGAAGGCAGCTCGCAAGAGTGCCCCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCAGGCACTGTGGCTCTGCGTGAGATCCGTCGTTACCAGAAGTCCACCGAGTTGCTGATCCGCAAGCTTCCATTCCAGCGCCTGGTGAGAGAAATCGCCCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCAGCCATCGGAGCTCTGCAGGAGGCCAGCGAGGCCTACCTGGTGGGTCTGTTTGAGGACACCAACCTGTGTGCCATCCACGCCAAACGTGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGTATCCGTGGTGAACGTGCTTAAGCGTTCCACGTGGTCCCTCCTCCTTTTCACTTCCTCCTGCCCTTCTGTCACCGATCTGTCTCTCCGTCCCTCGTCCCCATCACCCGCCTTCCCCGCTCTTCCTTCCTGTGTTAGTAGTATGTAGAGGAAAACTGATTATATTATGAATAAAGTGTATAGTTCTGCTTTTCTTAGTGCTTTTGACAAAAACACTTCTCGGGTACTCTTTCATGTGCATGTGCGTGCTGAGTTCTGGTGAT] consensusID : consensus_2300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 665 fasta sequence [CGAGAACAACGCTTAAGAGACTCGAGAATAAATTCGATTTTTTTGGACTGCAATCACTCAACGATTTTTCCGAGGTGAACCTAAGTAGCCATGGCTCGTACCAAGCAGACTGCCCGTAAATCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACAAAGGCAGCTCGCAAGAGCGCCCCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCTGGCACTGTGGCTCTGCGTGAGATCCGTCGTTACCAGAAGTCCACCGAGTTGCTGATCCGTAAGCTTCCATTCCAACGCCTGGTGAGAGAAATCGCCCAGGACTTCAAGACTGACCTGCGCTTCCAAAGTGCAGCCATCGGAGCTCTGCAGGAAGCCAGTGAGGCCTACCTGGTGGGACTGTTTGAGGACACTAACCTGTGTGCCATCCACGCCAAGCGTGTTACCATCATGCCCAAAGACATCCAGCTGGCACGCCGTATCCGTGGAGAACGTGCTTAAAATTTTTTGTGATTCCTTCTATGTTGTCCCTTCTTCCAACACCCTTTCTACCCCTCTCTACATTTAGTTACACGTTTGGTTTGCCGTTCCCTATATAATATTGTGCGAACTGTCACTTGGGGTGCCTATGTCCTCCTTGGAGCTACTAATAGCAGAGTTTTCTT] [+] EMBL FR0061487 [CGAGAACAACGCTTAAGAGACTCGAGAATAAATTCGATTTTTTTGGACTGCAATCACTCAACGATTTTTCCGAGGGGAACCTAAGTAGCCATGGCTCGTACCAAGCAGACTGCCCGTAAATCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACAAAGGCAGCTCGCAAGAGCGCCCCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCTGGCACTGTGGCTCTGCGTGAGATCCGTCGTTACCAGAAGTCCACCGAGGTGCTGATCCGTAAGCTTCCATTCCAACGCCTGGTGAGAGAAATCGCCCAGGACT ] [+] EMBL BU806174 [ CAACGCTTAAGAGACTCGAGAATAAATTCGATTTTTTTGGACTGCAATCACTCAACGATTTTTCCGAGGTGAACCTAAGTAGCCATGGCTCGTACCAAGCAGACTGCCCGTAAATCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACAAAGGCAGCTCGCAAGAGCGCCCCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCTGGCACTGTGGCTCTGCGTGAGATCCGTCGTTACCAGAAGTCCACCGAGTTGCTGATCCGTAAGCTTCCATTCCAACGCCTGGTGAGAGAAATCGCCCAGGACTTCAAGACTGACCTGCGCTTCCAAAGTGCAGCCATCGGAGCTCTGCAGGAAGCCAGTGAGGCCTACCTGGTGGGACTGTTTGAGGACACTAACCTGTGTGCCATCCACGCCAAGCGTGTTACCATCATGCCCAAAGACATCCAGCTGGCACGCCGTATCCGTGGAGAACGTGCTTAAAA ATTTTGTGATTCCTTCTATGTTGTCCCTTATTCCAACACCCTTTCTACCCCT ] [+] EMBL BU808405 [ CAATCACTCAACGATTTTTCCGAGGTGAACCTAAGTAGCCATGGCTCGTACCAAGCAGACTGCCCGTAAATCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACAAAGGCAGCTCGCAAGAGCGCCCCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCTGGCACTGTGGCTCTGCGTGAGATCCGTCGTTATCAGAAGTCCACCGAGTTGCTGATCCGTAAGCTTCCATTCCAACGCCTGGTGAGAGAAATCGCCCAGGACTTCAAGACTGACCTGCGCTTCCAAAGTGCAGCCATCGGAGCTCTGCAGGAAGCCAGTGAGGCCTACCTGGTGGGACTGTTTGAGGACACTAACCTGTGTGCCATCCACGCCAAGCGTGTTACCATCATGCCCAAAGACATCCAGCTGGCACGCCGTATCCGTGGAGAACGTGCTTAAAATTTTTTGTGATTCCTTCTATGTTGTCCCTTCTTCCAACACCCTTTCTACCCCTCTCTACATTTAGTTA ] [+] EMBL FR0055832 [ GCCTACCTGGTGGGACTGTTTGAGGACACTAACCTGTGTGCCATCCACGCCAAGCGTGTTACCATCATGCCCAACGACATCCAGCTGGCACGCCGTATCCGTGGAGAACGTGCTTAAAATTTTTTGTGATTCCTTCTATGTTGTCCCTTCGTCCAACACCCTTTCTACCCCTCTCTATATTTAGTTACACGTTTGGTTTGCCGTTCCCTATATAATATTGTGCGAACTGTCACTTGGGGTGCCTATGTCCTCCTTGGAGCTACTAATAGCAGAGTTTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2300#0 ---------CCGTAAATACAGACGAGC-CAAATT---TTTCTTACGACT----TCTTCTC 43 consensus_2300#1 CGAGAACAACGCTTAAGAGACTCGAGAATAAATTCGATTTTTTTGGACTGCAATCACTCA 60 * * ** * * **** ***** *** ** **** ** consensus_2300#0 ACTTTTCTCCGCGGGTGAACCTAAGTAGCCATGACTCGTACCAAGCAGACTGCCCGTAAA 103 consensus_2300#1 ACGATTTTTCCGAGGTGAACCTAAGTAGCCATGGCTCGTACCAAGCAGACTGCCCGTAAA 120 ** ** * * ******************** ************************** consensus_2300#0 TCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACGAAGGCAGCTCGCAAGAGTGCC 163 consensus_2300#1 TCCACTGGAGGCAAAGCCCCCCGTAAACAGCTGGCCACAAAGGCAGCTCGCAAGAGCGCC 180 ************************************** ***************** *** consensus_2300#0 CCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCAGGCACTGTGGCTCTGCGT 223 consensus_2300#1 CCTTCCACTGGGGGTGTCAAGAAGCCCCATCGCTACAGGCCTGGCACTGTGGCTCTGCGT 240 ***************************************** ****************** consensus_2300#0 GAGATCCGTCGTTACCAGAAGTCCACCGAGTTGCTGATCCGCAAGCTTCCATTCCAGCGC 283 consensus_2300#1 GAGATCCGTCGTTACCAGAAGTCCACCGAGTTGCTGATCCGTAAGCTTCCATTCCAACGC 300 ***************************************** ************** *** consensus_2300#0 CTGGTGAGAGAAATCGCCCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCGCAGCCATC 343 consensus_2300#1 CTGGTGAGAGAAATCGCCCAGGACTTCAAGACTGACCTGCGCTTCCAAAGTGCAGCCATC 360 ******************************** ************** ** ********* consensus_2300#0 GGAGCTCTGCAGGAGGCCAGCGAGGCCTACCTGGTGGGTCTGTTTGAGGACACCAACCTG 403 consensus_2300#1 GGAGCTCTGCAGGAAGCCAGTGAGGCCTACCTGGTGGGACTGTTTGAGGACACTAACCTG 420 ************** ***** ***************** ************** ****** consensus_2300#0 TGTGCCATCCACGCCAAACGTGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGT 463 consensus_2300#1 TGTGCCATCCACGCCAAGCGTGTTACCATCATGCCCAAAGACATCCAGCTGGCACGCCGT 480 ***************** ***** ************************************ consensus_2300#0 ATCCGTGGTGAACGTGCTTAAGCGTTCCACGTGGTCCCTCCTCCTTTTCACTTCCTCCTG 523 consensus_2300#1 ATCCGTGGAGAACGTGCTTAAA-ATTTTTTGTGATTCCTTCTATGTTGT----------- 528 ******** ************ ** *** * *** ** ** consensus_2300#0 CCCTTCTGTCACCGATCTGTCTCTCCGTCCCTCGTCCCCATCACCCGCCTTCCCCGCTCT 583 consensus_2300#1 CCCTTCTTCCAACACCCTTTCTACCCCTCTCTACATTTAGTTACACGTTTGGTTTGCCGT 588 ******* ** * ** *** ** ** ** * ** ** * ** * consensus_2300#0 TCCTTCCTGTGTTAGTAGTATGTAGAGGAAAACTGATTATATTATGAATAAAGTGTATAG 643 consensus_2300#1 TCC---CTATAT-AATATTGTGCGAACTGTCACT--------------TGGGGTGCCTA- 629 *** ** * * * ** * ** * *** * *** ** consensus_2300#0 TTCTGCTTTTCTTAGTGCTTTTGACAAAAACACTTCTCGGGTACTCTTTCATGTGCATGT 703 consensus_2300#1 ---TGTCCTCCTTGGAGCTACTAATAGCAGAGTTTTCTT--------------------- 665 ** * *** * *** * * * * ** consensus_2300#0 GCGTGCTGAGTTCTGGTGAT 723 consensus_2300#1 -------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |