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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 907 fasta sequence
[GCAGGCTGCGCCGGAGAAGCAAGACGGACACTTTACCTCCGCATCACAAGATCCGATTTTGGAGCGGAATTTTCACGCCCTGTCGGGTCGTGTTACCGGCTGGGGACGGCTGACAACCTTCACGGGCAGCAACTGGAGGATGCAGTGTAGATTCGACTGGTGACTGCTCGCCACTTCTCTCGCCCCTGTAGTGAGGCTGTCTGGGAGGCAGACATCCTGCGTTCCCTTTCTCTCAGCCGGTATTTTTGCTAGGACAAACACGACTGCCCGTCACTGGAGTCTCCCGCCCCTCCACCTTGTTTGGATCAGCACAGCTCATCTCCTTACTGAGGAGAGCGCAGCAGCTGCACAAGATTCACCTTTTACCATCGGATCCCTCCCAGCTCACACTGCCCTGTCGCCATGGTGCTGTCACAACGGCAACGAGATGAACTAAATCGGGCGATAGCTGATTATCTACGTTCCAATGGATATGAAGAGGCATATTCCACTTTCAAGAAGGAGGCTGAATTGGATAATAATGAAGAATTGGATAAAAAGTATGCTGGTCTTTTGGAAAAGAAATGGACTTCAGTCATCAGGTTACAAAAAAAGGTAATGGAACTTGAATCTAAACTAAATGAAGCTAAAGAGGAGATCACCCTCGGTGGGCCCGTTAGTCAGAAACGAGATCCTAAAGAGTGGATCCCACGCCCACCTGAACGGTATGCATTGAGCGGCCACCGTAGTCCAGTCACACATGTCATCTTCCACCCAGTCTTCAGTGTAATGGTTTCAGCTTCCGAGGATGCAACAATAAAGGTCTGGGACTATGAAACGGGAGACTTTGAACGCACGCTGAAGGGCCACACAGACTCTGTTCAGGACATCTCTTTTGATCTAACTGGCAAACTACTAGCATCGTGCT]
[+] EMBL BU806184 [GCAGGCTGCGCCGGAGAAGCAAGACGGACACTTTACCTCCGCATCACAAGATCCGATTTTGGAGCGGAATTTTCACGCCCTGTCGGGTCGTGTTACCGGCTGGGGACGGCTGACAACCTTCACGGGCAGCAACTGGAGGATGCAGTGTAGATTCGACTGGTGACTGCTCGCCACTTCTCTCGCCCCTGTAGTGAGGCTGTCTGGGAGGCAGACATCCTGCGTTCCCTTTCTCTCAGCCGGTATTTTTGCTAGGACAAACACGACTGCCCGTCACTGGAGTCTCCCGCCCCTCCACCTTGTTTGGATCAGCACAGCTCATCTCCTTACTGAGGAGAGCGCAGCAGCTGCACAAGATTCACCTTTTACCATCGGATCCCTCCCAGCTCACACTGCCCTGTCGCCATGGTGCTGTCACAACGGCAACGAGATGAACTAAATCGGGCGATAGCTGATTATCTACGTTCCAATGGATATGAAGAGGCATATTCCACTTTCAAGAAGGAGGCTGAATTGGATAATAATGAAGAATTGGATAAAAAGTATGCTGGTCTTTTGGAAAAGAAATGGACTTCAGTCATCAGGTTACAAAAAAAGGTAATGGAAC ]
[+] EMBL CA333171 [ GAGGCATATTCCACTTTCAAGAAGGAGGCTGAATTGGATAATAATGAAGAATTGGATAAAAAGTATGCTGGTCTTTTGGAAAAGAAATGGACTTCAGTCATCAGGTTACAAAAAAAGGTAATGGAACTTGAATCTAAACTAAATGAAGCTAAAGAGGAGATCACCCTCGGTGGGCCCGTTAGTCAGAAACGAGATCCTAAAGAGTGGATCCCACGCCCACCTGAACGGTATGCATTGAGCGGCCACCGTAGTCCAGTCACACATGTCATCTTCCACCCAGTCTTCAGTGTAATGGTTTCAGCTTCCGAGGATGCAACAATAAAGGTCTGGGACTATGAAACGGGAGACTTTGAACGCACGCTGAAGGGCCACACAGACTCTGTTCAGGACATCTCTTTTGATCTAACTGGCAAACTACTAGCATCGTGCT]
consensusID : consensus_2303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 461 fasta sequence
[CAATCTTAAGCTTCCTGCCCAACCTCAGAGTTGTGAATTAAACCAAAACCCACTGGGTTATGCAGTGTAGATTCGACTGGTGACTGCTCGCCACTTCTCTCGCCCCTGTAGTGAGGCTGTCTGGGAGGCAGACATCCTGCGTTCCCTTTCTCTCAGCCGGTATTTTTGCTAGGACAAACACGACTGCCCGTCACTGGAGTCTCCCGCCCCTCCACCTTGTTTGGATCAGCACAGCTCATCTCCTTACTGAGGAGAGCGCAGCAGCTGCACAAGATTCACCTTTTACCATCGGATCCCTCCCAGCTCACACTGCCCTGTCGCCATGGTGCTGTCACAACGGCAACGAGATGAACTAAATCGGGCGATAGCTGATTATCTACGTTCCAATGGATATGAAGAGGCATATTCCACTTTCAAGAAGGAGGCTGAATTGGATAATAATGAAGAATTGGATAAAAAGT]
[+] EMBL CA590582 [CAATCTTAAGCTTCCTGCCCAACCTCAGAGTTGTGAATTAAACCAAAACCCACTGGCTTATGCAGTGTAGATTCGACTGGTGACTGCTCGCCACTTCTCTCGCCCCTGTAGTGAGGCTGTCTGGGAGGCAGACATCCTGCGTTCCCTTTCTCTCAGCCGGTATTTTTGCTAGGACAAACACGACTGCCCGTCACTGGAGTCTCCCGCCCCTCCACCTTGTTTGGATCAGCACAGCTCATCTCCTTACTGAGGAGAGCGCAGCAGCTGCACAAGATTCACCTTTTACCATCGGATCCCTCCCAGCTCACACTGCCCTGTCGCCATGGTGCTGTCACAACGGCAACGAGATGAACTAAATCGGGCGATAGCTGATTATCTACGTTCCAATGGATATGAAGAGGCATATTCCACTTTCAAGAAGGAGGCTGAATTGGATAATAATGAAGAATTGGATAAAAAGT]
[+] EMBL FR0060907 [ CCACTGGGTTATGCAGTGTAGATTCGACTGGTGACTGCTCGCCACTTCTCTCGCCCCTGTAGTGAGGCTGTCTGGGAGGCAGACATCCTGCGTTCCCTTTCTCTCAGCCGGTATTTTTGCTAGGACAAACACGACTGCCCGTCACTGGAGTCTCCCGCCCCTCCACCTTGTTTGGATCAGCACAGCTCATCTCCTTACTGAGGAGAGCGCAGCAGCTGCACAAGATTCACCTTTTACCATCGGATCCCTCTCAGCTCACACTGCCCTGTCGCCATGGTGCTGTCACACCGGCAACGAGA ]
[+] EMBL FR0060173 [ GTAGATTCGACTGGTGACTGCTCGCCACTTCTCTCGCCCCTGTAGTGAGGCTGTCTGGGAGGCAGACATCCTGCGTTCCCTTTCTCTCAGCCGGTATTTTTGCTAGGACAAACACGACTGCCCGTCACTGGAGTCTCCCGCCCCTCCACCTTGTTTGGATCAGCACAGCTCATCTCCTTACTGAGGAGAGCGCAGCAGCTGCACAAGATTCACCTTTTACCATCGGATCCCTCCCAGCTCACACTGCCCTGTCGCCATGGTGCTGTCACAACGGCAACGAGATGAACTAAATCGGGCGATAGCTGATTATCTACGTTCCAATGGATATGAAGAGGCATATTCCACT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2303#0 GCAGGCTGCGCCGGAGAAGCAAGACGGACACTTTACCTCCGCATCACAAGATCCGATTTT 60
consensus_2303#1 ------------------------------------------------------------
consensus_2303#0 GGAGCGGAATTTTCACGCCCTGTCGGGTCGTGTTACCGGCTGGGGACGGCTGACAACCTT 120
consensus_2303#1 -----------------CAATCTTAAGCTTCCTGCCCAACCTCAGA--GTTG-TGAATTA 40
* * * * * ** * ** * ** * *
consensus_2303#0 CACGGGCAGCAACTGGAGGATGCAGTGTAGATTCGACTGGTGACTGCTCGCCACTTCTCT 180
consensus_2303#1 AACCAAAACCCACTGGGTTATGCAGTGTAGATTCGACTGGTGACTGCTCGCCACTTCTCT 100
** * * ***** *****************************************
consensus_2303#0 CGCCCCTGTAGTGAGGCTGTCTGGGAGGCAGACATCCTGCGTTCCCTTTCTCTCAGCCGG 240
consensus_2303#1 CGCCCCTGTAGTGAGGCTGTCTGGGAGGCAGACATCCTGCGTTCCCTTTCTCTCAGCCGG 160
************************************************************
consensus_2303#0 TATTTTTGCTAGGACAAACACGACTGCCCGTCACTGGAGTCTCCCGCCCCTCCACCTTGT 300
consensus_2303#1 TATTTTTGCTAGGACAAACACGACTGCCCGTCACTGGAGTCTCCCGCCCCTCCACCTTGT 220
************************************************************
consensus_2303#0 TTGGATCAGCACAGCTCATCTCCTTACTGAGGAGAGCGCAGCAGCTGCACAAGATTCACC 360
consensus_2303#1 TTGGATCAGCACAGCTCATCTCCTTACTGAGGAGAGCGCAGCAGCTGCACAAGATTCACC 280
************************************************************
consensus_2303#0 TTTTACCATCGGATCCCTCCCAGCTCACACTGCCCTGTCGCCATGGTGCTGTCACAACGG 420
consensus_2303#1 TTTTACCATCGGATCCCTCCCAGCTCACACTGCCCTGTCGCCATGGTGCTGTCACAACGG 340
************************************************************
consensus_2303#0 CAACGAGATGAACTAAATCGGGCGATAGCTGATTATCTACGTTCCAATGGATATGAAGAG 480
consensus_2303#1 CAACGAGATGAACTAAATCGGGCGATAGCTGATTATCTACGTTCCAATGGATATGAAGAG 400
************************************************************
consensus_2303#0 GCATATTCCACTTTCAAGAAGGAGGCTGAATTGGATAATAATGAAGAATTGGATAAAAAG 540
consensus_2303#1 GCATATTCCACTTTCAAGAAGGAGGCTGAATTGGATAATAATGAAGAATTGGATAAAAAG 460
************************************************************
consensus_2303#0 TATGCTGGTCTTTTGGAAAAGAAATGGACTTCAGTCATCAGGTTACAAAAAAAGGTAATG 600
consensus_2303#1 T----------------------------------------------------------- 461
*
consensus_2303#0 GAACTTGAATCTAAACTAAATGAAGCTAAAGAGGAGATCACCCTCGGTGGGCCCGTTAGT 660
consensus_2303#1 ------------------------------------------------------------
consensus_2303#0 CAGAAACGAGATCCTAAAGAGTGGATCCCACGCCCACCTGAACGGTATGCATTGAGCGGC 720
consensus_2303#1 ------------------------------------------------------------
consensus_2303#0 CACCGTAGTCCAGTCACACATGTCATCTTCCACCCAGTCTTCAGTGTAATGGTTTCAGCT 780
consensus_2303#1 ------------------------------------------------------------
consensus_2303#0 TCCGAGGATGCAACAATAAAGGTCTGGGACTATGAAACGGGAGACTTTGAACGCACGCTG 840
consensus_2303#1 ------------------------------------------------------------
consensus_2303#0 AAGGGCCACACAGACTCTGTTCAGGACATCTCTTTTGATCTAACTGGCAAACTACTAGCA 900
consensus_2303#1 ------------------------------------------------------------
consensus_2303#0 TCGTGCT 907
consensus_2303#1 -------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |