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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 623 fasta sequence
[AAATGTCTCTGTCTAAAGGAGCAAAGAAAAAGAAGAACCCCGGGCTGAAGCTAGCCAAAGATGTTTTCACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTTGCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAGAGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCATCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGGCACCTTCTACGGCGCTCTCTTCAGAGAGGGGGACGTTTGGATCTGTATGGAGCTGATGGACACGTCTCTGGACAAATTCTACAAGAAGGGTATCGAGAAAGGCAAAACCATCCCAGAGGACATCTTGGGAAAGATAACAGTAGCGATTGTAAAGGCGTTAGAACATCTCCACAGTAACCTGTCAGTCATACACAGAGATGTGAAACCCTCCAATGTTCTGATCAACACCTTGGGCCAGGTGAAAATGTGCGATTTCGGCATCAGCGGCCACCTGGTG]
[+] EMBL CA591320 [AAATGTCTCTGTCTAAAGGAGCAAAGAAAAAGAAGAACCCCGGGCTGAAGCTAGCCAAAGATGTTTTCACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTTGCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAGAGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCATCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGTCACCTTCTACGGCGCTCTCTTCAGAGAGGGGGACGTTTGGATCTGTATGGAGCTGATGGACACGTCTCTGGACAAATTCTACAAGAAGGTTATCGAGAAAGGCAAAACCATCCCAGAGGACATCTTGGGAAAGATAACAGTAGCGATTGTAAAGGCGTTAGAACATCTCCACAGTAACCTGTCAGTCATACACAGAGATGTGAAACCCTCCAATGTTCTGATCAACACCTTGGGCCAGGTGAAAATGTGCGATTTCGGCATCAGCGGCCACCTGGTG]
[+] EMBL FR0058995 [ AAGCTAGCCAAAGATGTTTTCACACGAGCCGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTTGCGTCACCAACGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAGAGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCATCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGGCACCTTCTACGGCGCTCTCTTCAGAGAGGGGGACGGTTGGATCTGTATGGAGCTGATGGACACGTCTCTGGACAAATTCTACAAGAA GGTATCGAGAAAGGC AGACCATCCCAGAGGACAT ]
[+] EMBL FR0058117 [ AATCTATCCAGAGAGGTTTACACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTTGCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAGAGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCATCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGTCACCTTCTACGGCGCTCTCTTCAGAGAGGGGGACGTTTGGATCTGTATGGAGCTGATGGACACGTCTCTGGACAAATTCTACAAGAAGGGTATCGAGAAAGGCANAANC ]
[+] EMBL FR0060201 [ CACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTTGCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAGAGCTGGGGCGGAGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCATCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGGCACCTTCTACGGCG ]
consensusID : consensus_2308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence
[GACATGCCGATTGGAGCATTACAGATTGCACCAACGTTTAGTTTTAATCGCTCCTAGGGCTTTTTTTTTTTTTTTTTTTTTGCAGAAGCCAGCGATCCTGAGCGGGTAGATGCAGGGAGGGATGCAGGGAGGGAAGGAAGGTGGGAGGGAGGGANNNANNNNNNGNNNNNGNNTTTGNGNTTNCCTTCCCNCTCNTTNNNGCNANGGGGANNTGTCTCTGTCTTTTTTTTTCNAGGNANAGAAGAACCCCGGGCTGAAGCTGGCCCAAAATGTTTTTCCACAGCCGGCACCACCAGCAGCGCCTCCCCGAAATCTCGACTCCAAAGCTTGCGTAACCATCGGAGATCACAGCTTTGAGGGGAGGGCGGACGACTTGGAGCAGATTGAA]
[+] EMBL CA591683 [GACATGCCGATTGGAGCATTACAGATTGCACCAACGTTTAGTTTTAATCGCTCCTAGGGCTTTTTTTTTTTTTTTTTTTTTGCAGAAGCCAGCGATCCTGAGCGGGTAGATGCAGGGAGGGATGCAGGGAGGGAAGGAAGGTGGGAGGGAGGGANNNANNNNNNGNNNNNGNNTTTGNGNTTNCCTTCCCNCTCNTTNNNGCNANGGGGANNTGTCTCTGTCTTTTTTTTTCNAGGNANAGAAGAACCCCGGGCTGAAGCTGGCCCAAAATGTTTTTCCACAGCCGGCACCACCAGCAGCGCCTCCCCGAAATCTCGACTCCAAAGCTTGCGTAACCATCGGAGATCACAGCTTTGAGGGGAGGGCGGACGACTTGGAGCAGATTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2308#0 AAATGTCTCTGTCTAAAGGAGCAAAGAAAAAGAAGAACCCCGGGCTGAAGCTAGCCAAAG 60
consensus_2308#1 ----------------------------------GACATGCCGATTGGAGC--ATTACAG 24
** * * ** *** * **
consensus_2308#0 ATGTTTTCACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTT 120
consensus_2308#1 ATTGCACCA-ACGTTTAGTTTTAATCGC------TCCTAGGGCTTTTTTTTTT-----TT 72
** ** ** * * ** *** * * * * * **
consensus_2308#0 GCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAG 180
consensus_2308#1 TTTTTTTTTGCAGAAGCCAGCGATCCTGAGCGGGTAGATGCAGGGAGGGATGCAGGGAGG 132
* * ** *** * * * * ** * ** *
consensus_2308#0 AGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCA 240
consensus_2308#1 GAAGGAAGGTGGGAGGGAGGGANNNANNNNNNGNNNNNGNNTTTGNGNTTNCCTTCCCNC 192
* * ***** * * * * * *
consensus_2308#0 TCATGGCCGTCAAGAGGATTCGTG-CTACGGTCAACACTCT-GGAACAGAAGAGGCTCCT 298
consensus_2308#1 TCNTTNNNGCNANGGGGANNTGTCTCTGTCTTTTTTTTTCNAGGNANAGAAGAACCCCGG 252
** * * * * *** ** ** * ** ** * ****** * *
consensus_2308#0 GATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGGCACCTTCTACGG 358
consensus_2308#1 GCTGAAGCTGGCC-------------CAAAATGTTTTTCCACAGCCGGCACCACCAGCAG 299
* ** * **** * ** * * * ******** * * *
consensus_2308#0 CGCTCTCTTCAGAGAGGGGGACGTTTGGATCTGTATGGA-GCTGATGGACACGTCTCTGG 417
consensus_2308#1 CGCCTCCCC--GAAATCTCGACTCCAAAGCTTGCGTAACCATCGGAGATCACAGCTTTGA 357
*** * ** * *** ** * * * *** ** **
consensus_2308#0 ACAAATTCTACAAGAAGGGTATCGAGAAAGGCAAAACCATCCCAGAGGACATCTTGGGAA 477
consensus_2308#1 GGGGA----GGGCGGACGACTTGGAGCAGATTGAA------------------------- 388
* * * * * *** * **
consensus_2308#0 AGATAACAGTAGCGATTGTAAAGGCGTTAGAACATCTCCACAGTAACCTGTCAGTCATAC 537
consensus_2308#1 ------------------------------------------------------------
consensus_2308#0 ACAGAGATGTGAAACCCTCCAATGTTCTGATCAACACCTTGGGCCAGGTGAAAATGTGCG 597
consensus_2308#1 ------------------------------------------------------------
consensus_2308#0 ATTTCGGCATCAGCGGCCACCTGGTG 623
consensus_2308#1 --------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |