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Takifugu rubripes
cluster # 2310 cluster # 2310       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2310#0 length = 1200 sequences # 4  
consensus_2310#1 length = 441 sequences # 1  

consensusID : consensus_2310#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1200
fasta sequence
                              [AACGTAAATGCAAACAATGTGAGAGGAAGAGTGAATGGCAGAAAAATCCAGTGTGTATTTGATGCCACGCTTCCCGCCTTGTCTGCAAGAACCACGAGCAGGACCATTGGCGTCATTACTGGAACCTACAACAACAGCGCAGGAACTTTCGGGGCAGCAAACATCGTTATCAGAACCAATGCTGTTGACCTGTCATCTCCCAACGCCACCGTCCAGAACCTTGCGACTACTAATACCACCACCAACAATGCCGTGTTATTCCGGCAAACGCTGATTCAAGCTCTATTTATCTCCGCGGGTGTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAGACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGGGCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATTTAAAGTAACTCAAAGTGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATATTACAAATATTCTATTTAGCCTGAACTTGTTGATATTCAATGAATTCACAGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCGCTCTACTGTGTTGTTGCAGTCCAAAGATGCAGAAAATTGTCAAGACTTATTCATATAATTGTAAAGAAGATGCTTGCATGTCGCTGTATTTTGCCAAAAGCTCTGACAGAACTGCAAAGAAAAAAAAAGATGTATAGCCAATAGTTAGGCGAAGAGCAACTTGGTTCTGGGTCCAATACTTCTATCTTTATTTTATCCTATCTTTAATGCTGTCAAAGCCTAGTTAAACATACTTTGGCAGATTCAGGAACCCAACAATAAATTTATCTCAACATCAAAGTGAAACATTTTCAGCTAGCCATTATGGATGGCAAAAAATGACACAAATTGAACTTTTATAGAAACTTATACAAAAGTGATGCTGGTAGAATTGTAACTAGACTTTGCCTTTGCACACATTCTACAAACTGTCAGTGTTTT]

[+] EMBL CA846745             [AACGTAAATGCAAACAATGTGAGAGGAAGAGTGAATGGCAGAAAAATCCAGTGTGTATTTGATGCCACGCTTCCCGCCTTGTCTGCAAGAACCACGAGCAGGACCATTGGCGTCATTACTGGAACCTACAACAACAGCGCAGGAACTTTCGGGGCAGCAAACATCGTTATCAGAACCAATGCTGTTGACCTGTCATCTCCCAACGCCACCGTCCAGAACCTTGCGACTACTAATACCACCACCAACAATGCCGTGTTATTCCGGCAAACGCTGATTCAAGCTCTATTTATCTCCGCGGGTGTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAGACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGGGCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATTTAAAGTAACTCAAAGTGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL FR0056487            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAATTTAAAGTAACTCAAAGTGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATATTACAAATATTCTATTTAGCCTGAACTTGTTGATATTCAGTGAATTCACAGTGAAACTTTTGAATGTTTTGCTCGCGGTCTATTGTAACTGTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA846804             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATATTACAAATATTCTATTTAGCCTGAACTTGTTGATATTCAATGAATTCACAGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CA846968             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AATATTACAAATATTCTATTTAGCCTGAACTTGTTGATATTCAATGAATTCACAGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCGCTCTACTGTGTTGTTGCAGTCCAAAGATGCAGAAAATTGTCAAGACTTATTCATATAATTGTAAAGAAGATGCTTGCATGTCGCTGTATTTTGCCAAAAGCTCTGACAGAACTGCAAAGAAAAAAAAAGATGTATAGCCAATAGTTAGGCGAAGAGCAACTTGGTTCTGGGTCCAATACTTCTATCTTTATTTTATCCTATCTTTAATGCTGTCAAAGCCTAGTTAAACATACTTTGGCAGATTCAGGAACCCAACAATAAATTTATCTCAACATCAAAGTGAAACATTTTCAGCTAGCCATTATGGATGGCAAAAAATGACACAAATTGAACTTTTATAGAAACTTATACAAAAGTGATGCTGGTAGAATTGTAACTAGACTTTGCCTTTGCACACATTCTACAAACTGTCAGTGTTTT]


>consensus_2310#0 AACGTAAATGCAAACAATGTGAGAGGAAGAGTGAATGGCAGAAAAATCCAGTGTGTATTT GATGCCACGCTTCCCGCCTTGTCTGCAAGAACCACGAGCAGGACCATTGGCGTCATTACT GGAACCTACAACAACAGCGCAGGAACTTTCGGGGCAGCAAACATCGTTATCAGAACCAAT GCTGTTGACCTGTCATCTCCCAACGCCACCGTCCAGAACCTTGCGACTACTAATACCACC ACCAACAATGCCGTGTTATTCCGGCAAACGCTGATTCAAGCTCTATTTATCTCCGCGGGT GTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAG ACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGG GCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATT TAAAGTAACTCAAAGTGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGG ACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATG AAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATATTACAAATAT TCTATTTAGCCTGAACTTGTTGATATTCAATGAATTCACAGTGAAACTTTTGAAGGTTTT GCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG CTCTACTGTGTTGTTGCAGTCCAAAGATGCAGAAAATTGTCAAGACTTATTCATATAATT GTAAAGAAGATGCTTGCATGTCGCTGTATTTTGCCAAAAGCTCTGACAGAACTGCAAAGA AAAAAAAAGATGTATAGCCAATAGTTAGGCGAAGAGCAACTTGGTTCTGGGTCCAATACT TCTATCTTTATTTTATCCTATCTTTAATGCTGTCAAAGCCTAGTTAAACATACTTTGGCA GATTCAGGAACCCAACAATAAATTTATCTCAACATCAAAGTGAAACATTTTCAGCTAGCC ATTATGGATGGCAAAAAATGACACAAATTGAACTTTTATAGAAACTTATACAAAAGTGAT GCTGGTAGAATTGTAACTAGACTTTGCCTTTGCACACATTCTACAAACTGTCAGTGTTTT



consensusID : consensus_2310#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence
                              [TCTCTGCGGGTGTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAGACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGGGCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATTTAAAGTAACTCAAAGCGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATAGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG]

[-] EMBL CA332469             [TCTCTGCGGGTGTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAGACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGGGCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATTTAAAGTAACTCAAAGCGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATAGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG]


>consensus_2310#1 TCTCTGCGGGTGTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTG CATCTCCACAGACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAA ACTCTTGAAGGGCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAA AACCACCAATTTAAAGTAACTCAAAGCGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAA TAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCT CACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAAT AGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATA TTTTTGAAATAAATGTTTTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2310#0      AACGTAAATGCAAACAATGTGAGAGGAAGAGTGAATGGCAGAAAAATCCAGTGTGTATTT 60
consensus_2310#1      ------------------------------------------------------------
                                                                                  

consensus_2310#0      GATGCCACGCTTCCCGCCTTGTCTGCAAGAACCACGAGCAGGACCATTGGCGTCATTACT 120
consensus_2310#1      ------------------------------------------------------------
                                                                                  

consensus_2310#0      GGAACCTACAACAACAGCGCAGGAACTTTCGGGGCAGCAAACATCGTTATCAGAACCAAT 180
consensus_2310#1      ------------------------------------------------------------
                                                                                  

consensus_2310#0      GCTGTTGACCTGTCATCTCCCAACGCCACCGTCCAGAACCTTGCGACTACTAATACCACC 240
consensus_2310#1      ------------------------------------------------------------
                                                                                  

consensus_2310#0      ACCAACAATGCCGTGTTATTCCGGCAAACGCTGATTCAAGCTCTATTTATCTCCGCGGGT 300
consensus_2310#1      -------------------------------------------------TCTCTGCGGGT 11
                                                                       **** ******

consensus_2310#0      GTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAG 360
consensus_2310#1      GTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAG 71
                      ************************************************************

consensus_2310#0      ACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGG 420
consensus_2310#1      ACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGG 131
                      ************************************************************

consensus_2310#0      GCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATT 480
consensus_2310#1      GCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATT 191
                      ************************************************************

consensus_2310#0      TAAAGTAACTCAAAGTGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGG 540
consensus_2310#1      TAAAGTAACTCAAAGCGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGG 251
                      *************** ********************************************

consensus_2310#0      ACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATG 600
consensus_2310#1      ACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATG 311
                      ************************************************************

consensus_2310#0      AAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATATTACAAATAT 660
consensus_2310#1      AAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATA---------- 361
                      **************************************************          

consensus_2310#0      TCTATTTAGCCTGAACTTGTTGATATTCAATGAATTCACAGTGAAACTTTTGAAGGTTTT 720
consensus_2310#1      ----------------------------------------GTGAAACTTTTGAAGGTTTT 381
                                                              ********************

consensus_2310#0      GCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG 780
consensus_2310#1      GCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG 441
                      ************************************************************

consensus_2310#0      CTCTACTGTGTTGTTGCAGTCCAAAGATGCAGAAAATTGTCAAGACTTATTCATATAATT 840
consensus_2310#1      ------------------------------------------------------------
                                                                                  

consensus_2310#0      GTAAAGAAGATGCTTGCATGTCGCTGTATTTTGCCAAAAGCTCTGACAGAACTGCAAAGA 900
consensus_2310#1      ------------------------------------------------------------
                                                                                  

consensus_2310#0      AAAAAAAAGATGTATAGCCAATAGTTAGGCGAAGAGCAACTTGGTTCTGGGTCCAATACT 960
consensus_2310#1      ------------------------------------------------------------
                                                                                  

consensus_2310#0      TCTATCTTTATTTTATCCTATCTTTAATGCTGTCAAAGCCTAGTTAAACATACTTTGGCA 1020
consensus_2310#1      ------------------------------------------------------------
                                                                                  

consensus_2310#0      GATTCAGGAACCCAACAATAAATTTATCTCAACATCAAAGTGAAACATTTTCAGCTAGCC 1080
consensus_2310#1      ------------------------------------------------------------
                                                                                  

consensus_2310#0      ATTATGGATGGCAAAAAATGACACAAATTGAACTTTTATAGAAACTTATACAAAAGTGAT 1140
consensus_2310#1      ------------------------------------------------------------
                                                                                  

consensus_2310#0      GCTGGTAGAATTGTAACTAGACTTTGCCTTTGCACACATTCTACAAACTGTCAGTGTTTT 1200
consensus_2310#1      ------------------------------------------------------------
                                                                                  




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)