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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2310#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1200 fasta sequence
[AACGTAAATGCAAACAATGTGAGAGGAAGAGTGAATGGCAGAAAAATCCAGTGTGTATTTGATGCCACGCTTCCCGCCTTGTCTGCAAGAACCACGAGCAGGACCATTGGCGTCATTACTGGAACCTACAACAACAGCGCAGGAACTTTCGGGGCAGCAAACATCGTTATCAGAACCAATGCTGTTGACCTGTCATCTCCCAACGCCACCGTCCAGAACCTTGCGACTACTAATACCACCACCAACAATGCCGTGTTATTCCGGCAAACGCTGATTCAAGCTCTATTTATCTCCGCGGGTGTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAGACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGGGCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATTTAAAGTAACTCAAAGTGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATATTACAAATATTCTATTTAGCCTGAACTTGTTGATATTCAATGAATTCACAGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCGCTCTACTGTGTTGTTGCAGTCCAAAGATGCAGAAAATTGTCAAGACTTATTCATATAATTGTAAAGAAGATGCTTGCATGTCGCTGTATTTTGCCAAAAGCTCTGACAGAACTGCAAAGAAAAAAAAAGATGTATAGCCAATAGTTAGGCGAAGAGCAACTTGGTTCTGGGTCCAATACTTCTATCTTTATTTTATCCTATCTTTAATGCTGTCAAAGCCTAGTTAAACATACTTTGGCAGATTCAGGAACCCAACAATAAATTTATCTCAACATCAAAGTGAAACATTTTCAGCTAGCCATTATGGATGGCAAAAAATGACACAAATTGAACTTTTATAGAAACTTATACAAAAGTGATGCTGGTAGAATTGTAACTAGACTTTGCCTTTGCACACATTCTACAAACTGTCAGTGTTTT]
[+] EMBL CA846745 [AACGTAAATGCAAACAATGTGAGAGGAAGAGTGAATGGCAGAAAAATCCAGTGTGTATTTGATGCCACGCTTCCCGCCTTGTCTGCAAGAACCACGAGCAGGACCATTGGCGTCATTACTGGAACCTACAACAACAGCGCAGGAACTTTCGGGGCAGCAAACATCGTTATCAGAACCAATGCTGTTGACCTGTCATCTCCCAACGCCACCGTCCAGAACCTTGCGACTACTAATACCACCACCAACAATGCCGTGTTATTCCGGCAAACGCTGATTCAAGCTCTATTTATCTCCGCGGGTGTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAGACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGGGCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATTTAAAGTAACTCAAAGTGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTAC ]
[+] EMBL FR0056487 [ CAATTTAAAGTAACTCAAAGTGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATATTACAAATATTCTATTTAGCCTGAACTTGTTGATATTCAGTGAATTCACAGTGAAACTTTTGAATGTTTTGCTCGCGGTCTATTGTAACTGTTA ]
[+] EMBL CA846804 [ CCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATATTACAAATATTCTATTTAGCCTGAACTTGTTGATATTCAATGAATTCACAGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG ]
[+] EMBL CA846968 [ AATATTACAAATATTCTATTTAGCCTGAACTTGTTGATATTCAATGAATTCACAGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCGCTCTACTGTGTTGTTGCAGTCCAAAGATGCAGAAAATTGTCAAGACTTATTCATATAATTGTAAAGAAGATGCTTGCATGTCGCTGTATTTTGCCAAAAGCTCTGACAGAACTGCAAAGAAAAAAAAAGATGTATAGCCAATAGTTAGGCGAAGAGCAACTTGGTTCTGGGTCCAATACTTCTATCTTTATTTTATCCTATCTTTAATGCTGTCAAAGCCTAGTTAAACATACTTTGGCAGATTCAGGAACCCAACAATAAATTTATCTCAACATCAAAGTGAAACATTTTCAGCTAGCCATTATGGATGGCAAAAAATGACACAAATTGAACTTTTATAGAAACTTATACAAAAGTGATGCTGGTAGAATTGTAACTAGACTTTGCCTTTGCACACATTCTACAAACTGTCAGTGTTTT]
consensusID : consensus_2310#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[TCTCTGCGGGTGTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAGACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGGGCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATTTAAAGTAACTCAAAGCGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATAGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG]
[-] EMBL CA332469 [TCTCTGCGGGTGTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAGACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGGGCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATTTAAAGTAACTCAAAGCGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGGACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATGAAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATAGTGAAACTTTTGAAGGTTTTGCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2310#0 AACGTAAATGCAAACAATGTGAGAGGAAGAGTGAATGGCAGAAAAATCCAGTGTGTATTT 60
consensus_2310#1 ------------------------------------------------------------
consensus_2310#0 GATGCCACGCTTCCCGCCTTGTCTGCAAGAACCACGAGCAGGACCATTGGCGTCATTACT 120
consensus_2310#1 ------------------------------------------------------------
consensus_2310#0 GGAACCTACAACAACAGCGCAGGAACTTTCGGGGCAGCAAACATCGTTATCAGAACCAAT 180
consensus_2310#1 ------------------------------------------------------------
consensus_2310#0 GCTGTTGACCTGTCATCTCCCAACGCCACCGTCCAGAACCTTGCGACTACTAATACCACC 240
consensus_2310#1 ------------------------------------------------------------
consensus_2310#0 ACCAACAATGCCGTGTTATTCCGGCAAACGCTGATTCAAGCTCTATTTATCTCCGCGGGT 300
consensus_2310#1 -------------------------------------------------TCTCTGCGGGT 11
**** ******
consensus_2310#0 GTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAG 360
consensus_2310#1 GTGATGGGTCTCGCCGTACTATGAGGTGCCTGAAAATCCGAGTTTGTTGCATCTCCACAG 71
************************************************************
consensus_2310#0 ACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGG 420
consensus_2310#1 ACATAAAACTCAGAAACAACTGATCTAATGTATCTGTTCTACTTTTGAAACTCTTGAAGG 131
************************************************************
consensus_2310#0 GCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATT 480
consensus_2310#1 GCAGGAAAATGTTTCCCTTTTATCAATACTACCGGTCTACAGAAATTAAAACCACCAATT 191
************************************************************
consensus_2310#0 TAAAGTAACTCAAAGTGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGG 540
consensus_2310#1 TAAAGTAACTCAAAGCGCAATTTCACCAGCAGGTGTCGCCCCTTCCAAATAAAATGAAGG 251
*************** ********************************************
consensus_2310#0 ACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATG 600
consensus_2310#1 ACAGCAGAAAGTTTACATGACGCTTTTCTGACAAATCTACAGATTGTCTCACTCATGATG 311
************************************************************
consensus_2310#0 AAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATATTACAAATAT 660
consensus_2310#1 AAGCCAGTGAATGGCAGATATGTGTGTTAATAATGTTATTTTGTGAAATA---------- 361
**************************************************
consensus_2310#0 TCTATTTAGCCTGAACTTGTTGATATTCAATGAATTCACAGTGAAACTTTTGAAGGTTTT 720
consensus_2310#1 ----------------------------------------GTGAAACTTTTGAAGGTTTT 381
********************
consensus_2310#0 GCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG 780
consensus_2310#1 GCTCGCTGTTTATTGTAACTGTTATCTTCGTATTGCATATTTTTGAAATAAATGTTTTCG 441
************************************************************
consensus_2310#0 CTCTACTGTGTTGTTGCAGTCCAAAGATGCAGAAAATTGTCAAGACTTATTCATATAATT 840
consensus_2310#1 ------------------------------------------------------------
consensus_2310#0 GTAAAGAAGATGCTTGCATGTCGCTGTATTTTGCCAAAAGCTCTGACAGAACTGCAAAGA 900
consensus_2310#1 ------------------------------------------------------------
consensus_2310#0 AAAAAAAAGATGTATAGCCAATAGTTAGGCGAAGAGCAACTTGGTTCTGGGTCCAATACT 960
consensus_2310#1 ------------------------------------------------------------
consensus_2310#0 TCTATCTTTATTTTATCCTATCTTTAATGCTGTCAAAGCCTAGTTAAACATACTTTGGCA 1020
consensus_2310#1 ------------------------------------------------------------
consensus_2310#0 GATTCAGGAACCCAACAATAAATTTATCTCAACATCAAAGTGAAACATTTTCAGCTAGCC 1080
consensus_2310#1 ------------------------------------------------------------
consensus_2310#0 ATTATGGATGGCAAAAAATGACACAAATTGAACTTTTATAGAAACTTATACAAAAGTGAT 1140
consensus_2310#1 ------------------------------------------------------------
consensus_2310#0 GCTGGTAGAATTGTAACTAGACTTTGCCTTTGCACACATTCTACAAACTGTCAGTGTTTT 1200
consensus_2310#1 ------------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |