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Takifugu rubripes
cluster # 2318 cluster # 2318       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2318#0 length = 633 sequences # 2  
consensus_2318#1 length = 629 sequences # 2  
consensus_2318#2 length = 374 sequences # 1  

consensusID : consensus_2318#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 633
fasta sequence
                              [AACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTAAGATCATAGAGTTGATTTCTAAGGGCGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGCGTCAGGGGTGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATGGCGTGTCAAGAAAGTACATCCCACCAGCACGCATGATGTCAACGGAGAGCGCCAACAGCTTCACGCTGATTGGAGAAGCATCTGATTGTGGCAACATGGAACATCTCAGTCGTAGGCTGAAGGTCACCAGTGACCTGTTTGACATCATGTCAGGCCAGACAGACGTGGACCACCCGCTCTGTGAGGAGTGTACCGACACACTGCTGGACCACCTCGACACACAGCTCAATATTACAGAGAACGAATGCCAGAATTACAAGCAGTGTCTGGAGCTG]

[+] EMBL BU807495             [AACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTAAGATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATGGCGTGTCAAGAAAGTACATCCCACCAGCACGCATGATGTCAACGGAGAGCGCCAACAGCTTCACGCTGATTGGAGAAGCATCTGATTGTGGCAACATGGAACATCTCAGTCGTAGGCTGAAGGTCACCAGTGACCTGTTTGACATCATGTCAGGCCAGACAGACGTGGACCACCCGCTCTGTGAGGAGTGTACCGACACACTGCTGGACCACCTCGACACACAGCTCAATATTACAGAGAACGAATGCCAGAATTACAAGCAGTGTCTGGAGCTG]
[+] EMBL FR0060888            [                                                                              tTACGGGCGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGCGTCAGGAGTGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCAT                                                                                                                                                                                                                                                                                                        ]


>consensus_2318#0 AACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTA AGATCATAGAGTTGATTTCTAAGGGCGGGATGCATGAATTCTGCTAAATAATTTCATATT TTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGC TTCGTGCGTCAGGGGTGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGAC CGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCG GAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATGGC GTGTCAAGAAAGTACATCCCACCAGCACGCATGATGTCAACGGAGAGCGCCAACAGCTTC ACGCTGATTGGAGAAGCATCTGATTGTGGCAACATGGAACATCTCAGTCGTAGGCTGAAG GTCACCAGTGACCTGTTTGACATCATGTCAGGCCAGACAGACGTGGACCACCCGCTCTGT GAGGAGTGTACCGACACACTGCTGGACCACCTCGACACACAGCTCAATATTACAGAGAAC GAATGCCAGAATTACAAGCAGTGTCTGGAGCTG



consensusID : consensus_2318#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 629
fasta sequence
                              [ACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTAAGATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCGTGAGTTGACCTATTTAAAGCGTAATATGCCCTACAGACTAGCTAGCTAGGTTAGCTTCCTAACCAGCTAGTTTGGAACCATGATAGACATTTGAGTTCTTTGGCTGGTAAATACTGCGTAAGTGATATTAAAGAGGACTATCTAAAGGTTGTATTTGACGTCAGCGCATGTCCTGTTGTAGTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATGGCGTGTCAAGAAAGTACATCCCACCAGCACGCATGATGTCAACGGAGAGCGCCAACAGCTTCACGCTGATTGGAGAAGCATCTGATTGTG]

[+] EMBL CA589973             [ACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTAAGATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCGTGAGTTGACCTATTTAAAGCGTAATATGCCCTACAGACTAGCTAGCTAGGTTAGCTTCCTAACCAGCTAGTTTGGAACCATGATAGACATTTGAGTTCTTTGGCTGGTAAATACTGCGTAAGTGATATTAAAGAGGACTATCTAAAGGTTGTATTTGACGTCAGCGCATGTCCTGTTGTAGTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATGGCGTGTCAAGAAAGTACATCCCACCAGCACGCATGATGTCAACGGAGAGCGCCAACAGCTTCACGCTGATTGGAGAAGCATCTGATTGTG]
[+] EMBL CA591273             [                                          TGCTACAGTCATACCTAAGATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCGTGAGTTGACCTATTTAAAGCGTAATATGCCCTACAGACTAGCTAGCTAGGTTAGCTTCCTAACCAGCTAGTTTGGAACCATGATAGACATTTGAGTTCTTTGGCTGGTAAATACTGCGTAAGTGATATTAAAGAGGACTATCTAAAGGTTGTATTTGACGTCAGCGCATGTCCTGTTGTAGTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACA                                                                                                                                                        ]


>consensus_2318#1 ACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTAA GATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTT TCACGAATAACCGTGAGTTGACCTATTTAAAGCGTAATATGCCCTACAGACTAGCTAGCT AGGTTAGCTTCCTAACCAGCTAGTTTGGAACCATGATAGACATTTGAGTTCTTTGGCTGG TAAATACTGCGTAAGTGATATTAAAGAGGACTATCTAAAGGTTGTATTTGACGTCAGCGC ATGTCCTGTTGTAGTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAG CTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGA CCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGC GGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATGG CGTGTCAAGAAAGTACATCCCACCAGCACGCATGATGTCAACGGAGAGCGCCAACAGCTT CACGCTGATTGGAGAAGCATCTGATTGTG



consensusID : consensus_2318#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence
                              [AGAGTTGATTGCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGTGGGAGCACCGCAGCAGACTTAGCGTTCAGAAATCTGAGTTCAGCTAAAGATAATGCCAAATCCAGAGAAGTCACTCCCAATAAACACAGCCATGTGTAGCTCACATTTT]

[+] EMBL FR0059776            [AGAGTTGATTGCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGTGGGAGCACCGCAGCAGACTTAGCGTTCAGAAATCTGAGTTCAGCTAAAGATAATGCCAAATCCAGAGAAGTCACTCCCAATAAACACAGCCATGTGTAGCTCACATTTT]


>consensus_2318#2 AGAGTTGATTGCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGA ATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGT GTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCA CAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCT CCGAGGGGGAGACGGCACCAGAGGTGGGAGCACCGCAGCAGACTTAGCGTTCAGAAATCT GAGTTCAGCTAAAGATAATGCCAAATCCAGAGAAGTCACTCCCAATAAACACAGCCATGT GTAGCTCACATTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2318#0      AACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTA 60
consensus_2318#1      -ACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTA 59
consensus_2318#2      ------------------------------------------------------------
                                                                                  

consensus_2318#0      AGATCATAGAGTTGATTTCTAAGGGCGGGATGCATGAATTCTGCTAAATAATTTCATATT 120
consensus_2318#1      AGATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATT 119
consensus_2318#2      -------AGAGTTGATTGCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATT 53
                             ********** ** *   ***********************************

consensus_2318#0      TTCACGAATAACC----------------------------------------------- 133
consensus_2318#1      TTCACGAATAACCGTGAGTTGACCTATTTAAAGCGTAATATGCCCTACAGACTAGCTAGC 179
consensus_2318#2      TTCACGAATAACC----------------------------------------------- 66
                      *************                                               

consensus_2318#0      ------------------------------------------------------------
consensus_2318#1      TAGGTTAGCTTCCTAACCAGCTAGTTTGGAACCATGATAGACATTTGAGTTCTTTGGCTG 239
consensus_2318#2      ------------------------------------------------------------
                                                                                  

consensus_2318#0      ------------------------------------------------------------
consensus_2318#1      GTAAATACTGCGTAAGTGATATTAAAGAGGACTATCTAAAGGTTGTATTTGACGTCAGCG 299
consensus_2318#2      ------------------------------------------------------------
                                                                                  

consensus_2318#0      ---------------TTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCA 178
consensus_2318#1      CATGTCCTGTTGTAGTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCA 359
consensus_2318#2      ---------------TTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCA 111
                                     *********************************************

consensus_2318#0      GCTTCGTGCGTCAGGGGTGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCG 238
consensus_2318#1      GCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCG 419
consensus_2318#2      GCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCG 171
                      ******** ***** * *******************************************

consensus_2318#0      ACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGG 298
consensus_2318#1      ACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGG 479
consensus_2318#2      ACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGG 231
                      ************************************************************

consensus_2318#0      CGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATG 358
consensus_2318#1      CGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATG 539
consensus_2318#2      CGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGTGG-----GAGCACCGCAGCAGACTTA 286
                      ********************************* **     *   *   **    *  * 

consensus_2318#0      GCGTGTCAAGAAAGTACATCCCACCAGCACGCATG--ATGTCAACGGAGAGCGCCAACAG 416
consensus_2318#1      GCGTGTCAAGAAAGTACATCCCACCAGCACGCATG--ATGTCAACGGAGAGCGCCAACAG 597
consensus_2318#2      GCGT-TCAGAAATCTGAGTTCAGCTAAAGATAATGCCAAATCCAGAGAAGTCACTCCCAA 345
                      **** ***  **  *   * *  * *      ***  *  ** *  **   * *   ** 

consensus_2318#0      CTTCACGCTGATTGGAGAAGCATCTGATTGTGGCAACATGGAACATCTCAGTCGTAGGCT 476
consensus_2318#1      CTTCACGCTGATTGGAGAAGCATCTGATTGTG---------------------------- 629
consensus_2318#2      -TAAACACAGCCATGTGTAGC-TCACATTTT----------------------------- 374
                       *  ** * *    * * *** **  *** *                             

consensus_2318#0      GAAGGTCACCAGTGACCTGTTTGACATCATGTCAGGCCAGACAGACGTGGACCACCCGCT 536
consensus_2318#1      ------------------------------------------------------------
consensus_2318#2      ------------------------------------------------------------
                                                                                  

consensus_2318#0      CTGTGAGGAGTGTACCGACACACTGCTGGACCACCTCGACACACAGCTCAATATTACAGA 596
consensus_2318#1      ------------------------------------------------------------
consensus_2318#2      ------------------------------------------------------------
                                                                                  

consensus_2318#0      GAACGAATGCCAGAATTACAAGCAGTGTCTGGAGCTG 633
consensus_2318#1      -------------------------------------
consensus_2318#2      -------------------------------------
                                                           




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)