These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2318#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence [AACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTAAGATCATAGAGTTGATTTCTAAGGGCGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGCGTCAGGGGTGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATGGCGTGTCAAGAAAGTACATCCCACCAGCACGCATGATGTCAACGGAGAGCGCCAACAGCTTCACGCTGATTGGAGAAGCATCTGATTGTGGCAACATGGAACATCTCAGTCGTAGGCTGAAGGTCACCAGTGACCTGTTTGACATCATGTCAGGCCAGACAGACGTGGACCACCCGCTCTGTGAGGAGTGTACCGACACACTGCTGGACCACCTCGACACACAGCTCAATATTACAGAGAACGAATGCCAGAATTACAAGCAGTGTCTGGAGCTG] [+] EMBL BU807495 [AACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTAAGATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATGGCGTGTCAAGAAAGTACATCCCACCAGCACGCATGATGTCAACGGAGAGCGCCAACAGCTTCACGCTGATTGGAGAAGCATCTGATTGTGGCAACATGGAACATCTCAGTCGTAGGCTGAAGGTCACCAGTGACCTGTTTGACATCATGTCAGGCCAGACAGACGTGGACCACCCGCTCTGTGAGGAGTGTACCGACACACTGCTGGACCACCTCGACACACAGCTCAATATTACAGAGAACGAATGCCAGAATTACAAGCAGTGTCTGGAGCTG] [+] EMBL FR0060888 [ tTACGGGCGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGCGTCAGGAGTGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCAT ] consensusID : consensus_2318#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 629 fasta sequence [ACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTAAGATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCGTGAGTTGACCTATTTAAAGCGTAATATGCCCTACAGACTAGCTAGCTAGGTTAGCTTCCTAACCAGCTAGTTTGGAACCATGATAGACATTTGAGTTCTTTGGCTGGTAAATACTGCGTAAGTGATATTAAAGAGGACTATCTAAAGGTTGTATTTGACGTCAGCGCATGTCCTGTTGTAGTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATGGCGTGTCAAGAAAGTACATCCCACCAGCACGCATGATGTCAACGGAGAGCGCCAACAGCTTCACGCTGATTGGAGAAGCATCTGATTGTG] [+] EMBL CA589973 [ACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTAAGATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCGTGAGTTGACCTATTTAAAGCGTAATATGCCCTACAGACTAGCTAGCTAGGTTAGCTTCCTAACCAGCTAGTTTGGAACCATGATAGACATTTGAGTTCTTTGGCTGGTAAATACTGCGTAAGTGATATTAAAGAGGACTATCTAAAGGTTGTATTTGACGTCAGCGCATGTCCTGTTGTAGTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATGGCGTGTCAAGAAAGTACATCCCACCAGCACGCATGATGTCAACGGAGAGCGCCAACAGCTTCACGCTGATTGGAGAAGCATCTGATTGTG] [+] EMBL CA591273 [ TGCTACAGTCATACCTAAGATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCGTGAGTTGACCTATTTAAAGCGTAATATGCCCTACAGACTAGCTAGCTAGGTTAGCTTCCTAACCAGCTAGTTTGGAACCATGATAGACATTTGAGTTCTTTGGCTGGTAAATACTGCGTAAGTGATATTAAAGAGGACTATCTAAAGGTTGTATTTGACGTCAGCGCATGTCCTGTTGTAGTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACA ] consensusID : consensus_2318#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [AGAGTTGATTGCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGTGGGAGCACCGCAGCAGACTTAGCGTTCAGAAATCTGAGTTCAGCTAAAGATAATGCCAAATCCAGAGAAGTCACTCCCAATAAACACAGCCATGTGTAGCTCACATTTT] [+] EMBL FR0059776 [AGAGTTGATTGCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATTTTCACGAATAACCTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCAGCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCGACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGGCGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGTGGGAGCACCGCAGCAGACTTAGCGTTCAGAAATCTGAGTTCAGCTAAAGATAATGCCAAATCCAGAGAAGTCACTCCCAATAAACACAGCCATGTGTAGCTCACATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2318#0 AACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTA 60 consensus_2318#1 -ACAATAGGGAAGTGGAAAGACAAAACCATCCGTTGTGTAAAATGCTACAGTCATACCTA 59 consensus_2318#2 ------------------------------------------------------------ consensus_2318#0 AGATCATAGAGTTGATTTCTAAGGGCGGGATGCATGAATTCTGCTAAATAATTTCATATT 120 consensus_2318#1 AGATCATAGAGTTGATTTCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATT 119 consensus_2318#2 -------AGAGTTGATTGCTTACCACGGGATGCATGAATTCTGCTAAATAATTTCATATT 53 ********** ** * *********************************** consensus_2318#0 TTCACGAATAACC----------------------------------------------- 133 consensus_2318#1 TTCACGAATAACCGTGAGTTGACCTATTTAAAGCGTAATATGCCCTACAGACTAGCTAGC 179 consensus_2318#2 TTCACGAATAACC----------------------------------------------- 66 ************* consensus_2318#0 ------------------------------------------------------------ consensus_2318#1 TAGGTTAGCTTCCTAACCAGCTAGTTTGGAACCATGATAGACATTTGAGTTCTTTGGCTG 239 consensus_2318#2 ------------------------------------------------------------ consensus_2318#0 ------------------------------------------------------------ consensus_2318#1 GTAAATACTGCGTAAGTGATATTAAAGAGGACTATCTAAAGGTTGTATTTGACGTCAGCG 299 consensus_2318#2 ------------------------------------------------------------ consensus_2318#0 ---------------TTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCA 178 consensus_2318#1 CATGTCCTGTTGTAGTTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCA 359 consensus_2318#2 ---------------TTACGATGGAGGTGTCCAAATCATCGAGCACAACCATGCAGGTCA 111 ********************************************* consensus_2318#0 GCTTCGTGCGTCAGGGGTGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCG 238 consensus_2318#1 GCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCG 419 consensus_2318#2 GCTTCGTGTGTCAGCGATGCTGTCAGCCGCTCAAGCTGGACACGTCCTTTAATGTCCTCG 171 ******** ***** * ******************************************* consensus_2318#0 ACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGG 298 consensus_2318#1 ACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGG 479 consensus_2318#2 ACCGCGTCACAGTCCATGAACTTACAGCACCGTTAGTCACAGTGACACCGAGTAAACAGG 231 ************************************************************ consensus_2318#0 CGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATG 358 consensus_2318#1 CGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGAGGCATTTGTAGAAAACAAACAAGATG 539 consensus_2318#2 CGGAGAGCTCCGAGGGGGAGACGGCACCAGAGGTGG-----GAGCACCGCAGCAGACTTA 286 ********************************* ** * * ** * * consensus_2318#0 GCGTGTCAAGAAAGTACATCCCACCAGCACGCATG--ATGTCAACGGAGAGCGCCAACAG 416 consensus_2318#1 GCGTGTCAAGAAAGTACATCCCACCAGCACGCATG--ATGTCAACGGAGAGCGCCAACAG 597 consensus_2318#2 GCGT-TCAGAAATCTGAGTTCAGCTAAAGATAATGCCAAATCCAGAGAAGTCACTCCCAA 345 **** *** ** * * * * * *** * ** * ** * * ** consensus_2318#0 CTTCACGCTGATTGGAGAAGCATCTGATTGTGGCAACATGGAACATCTCAGTCGTAGGCT 476 consensus_2318#1 CTTCACGCTGATTGGAGAAGCATCTGATTGTG---------------------------- 629 consensus_2318#2 -TAAACACAGCCATGTGTAGC-TCACATTTT----------------------------- 374 * ** * * * * *** ** *** * consensus_2318#0 GAAGGTCACCAGTGACCTGTTTGACATCATGTCAGGCCAGACAGACGTGGACCACCCGCT 536 consensus_2318#1 ------------------------------------------------------------ consensus_2318#2 ------------------------------------------------------------ consensus_2318#0 CTGTGAGGAGTGTACCGACACACTGCTGGACCACCTCGACACACAGCTCAATATTACAGA 596 consensus_2318#1 ------------------------------------------------------------ consensus_2318#2 ------------------------------------------------------------ consensus_2318#0 GAACGAATGCCAGAATTACAAGCAGTGTCTGGAGCTG 633 consensus_2318#1 ------------------------------------- consensus_2318#2 ------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |