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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 706 fasta sequence
[CAGTTTCATCACCTTTTCTGTGTTTTTGTGCACATTTAGTCAATATTATGACCAAAACGTTCTTCTCTTCACGTCTGCATTTTGTGCATTATTCTGAATGGAAAGTTACGATCGTGAACAGATAATCTATGTTGGTCTAGTACTTTTTAATTTCTACGGAAGCCTGATGCTGCCAACCCAGACACAAGAGGGGTAAGTTTAGTGTAGAGCTCCAGGTTCATCTCAACTCGACGGTTCCTGAGGCAA-AGGTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGGTTTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGTGGACATCCTGATCCAGAGGATTTACCCCCAGACACCAGCAACGGAAACACAGGAGAAGACTCTCTGACACAGATGGCCACACCTGAACATTCTTACAACCTGCTGGTTGATGAGGCAAATAATCAGCTAAAAGGGCAAACTAAAGCAGTAATGCCAGAAAATGCACTTATGAAACATGAAGACAGGAAGGATTTTGCTCAGGTCCAGGACTCGGATGAGTTACCAGACCGCCCCCCTCCCTGTGGGATGTCATCCACCAAATGCATCCTGTCTGATGAAGTGACCCCAAAGACTGAAGGTTGGGCAATGGAGTGGCACAAACATCAAATGGCCGCGATCAGCAGTGAGACAT]
[+] EMBL BU807743 [CAGTTTCATCACCTTTTCTGTGTTTTTGTGCACATTTAGTCAATATTATGACCAAAACGTTCTTCTCTTCACGTCTGCATTTTGTGCATTATTCTGAATGGAAAGTTACGATCGTGAACAGATAATCTATGTTGGTCTAGTACTTTTTAATTTCTACGGAAGCCTGATGCTGCCAACCCAGACACAAGAGGGGTAAGTTTAGTGTAGAGCTCCAGGTTCATCTCAACTCGACGGTTCCTGAGGTAATATGTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGGTTTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGTGGACATCCTGATCCAGAGGATTTACCCCCAGACACCAGCAACGGAAACACAGGAGAAGACTCTCTGACACAGATGGCCACACCTGAACATTCTTACAACCTGCTGGTTGATGAGGCAAATAATCAGCTAAAAGGGCAAACTAAAGCAGTAATGCCAGAAAATGCACTTATGAAACATGAAGACAGG ]
[+] EMBL CA590242 [ GGGTAAGTTTAGTGTAGAGCTCCAGGTTCATCTCAACTCGACGGTTCCTGAGGCAA AGGTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGGTTTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGTGGACATCCTGATCCAGAGGATTTACCCCCAGACACTAGCAACGGAAACACAGGAGAAGACTCTCTGACACAGATGGCCACACCTGAACATTCTTACAACCTGCTGGTTGATGAGGCAAATAATCAGCTAAAAGGGCAAACTAAAGCAGTAATGCCAGAAAATGCACTTATGAAACATGAAGACAGGAAGGATTTTGCTCAGGTCCAGGACTCGGATGAGTTACCAGACCGCCCCCCTCCCTGTGGGATGTCATCCACCAAATGCATCCTGTCTGATGAAGTGACCCCAAAGACTGAAGGTTGGGCAATGGAGTGGCACAAACATCAAATGGCCGCGATCAGCAGTGAGACAT]
consensusID : consensus_2327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence
[CTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACCCTAAAGCCTGAAGGTAATAATCCAGGTTATGAACATTTAAAGGGTTTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGTGGACATCCTGATCCAGAGGATTTACCCCCAGACACCAGCAACGGAAACACAGGAGAAGACTCTCTGACACAGATGGCCACACCTGAACATTCTTACAACCTGCTGGTTGATGAGGCAAATAATCAGCTAAAAGGGCAAACTAAAGCAGTAATGCCAGAAAATGCACTTATGAAACATGAAGACAGGAAGGATTTTGCTCAGGTCCAGGACTCGGATGAGTTACCAGACCGCCCCCCTCCCTGTGGGATGTCATCCACCAAATGCATCCTGTCTGATGAAGTGACCCCAAAGACTGAAGGTTGGGCAATGGAGTGGCACAAACATCAAATGGCCGCGATCAGCAGTGAGACATTTGACAGCCTCCTGAAGACAAGTCCTGAATACTCTGGTTGTAGAAGCAACATGGCCACCTTTGTCATAACAAGA]
[+] EMBL CA590681 [CTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACCCTAAAGCCTGAAGGTAATAATCCAGGTTATGAACATTTAAAGGGTTTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGTGGACATCCTGATCCAGAGGATTTACCCCCAGACACCAGCAACGGAAACACAGGAGAAGACTCTCTGACACAGATGGCCACACCTGAACATTCTTACAACCTGCTGGTTGATGAGGCAAATAATCAGCTAAAAGGGCAAACTAAAGCAGTAATGCCAGAAAATGCACTTATGAAACATGAAGACAGGAAGGATTTTGCTCAGGTCCAGGACTCGGATGAGTTACCAGACCGCCCCCCTCCCTGTGGGATGTCATCCACCAAATGCATCCTGTCTGATGAAGTGACCCCAAAGACTGAAGGTTGGGCAATGGAGTGGCACAAACATCAAATGGCCGCGATCAGCAGTGAGACATTTGACAGCCTCCTGAAGACAAGTCCTGAATACTCTGGTTGTAGAAGCAACATGGCCACCTTTGTCATAACAAGA]
consensusID : consensus_2327#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[CATATATCATAAAACAGCTCCAAACAGTTTCATCACCTTTTCTGTGTTTTTGTGCACATTTAGTCAATATTATGACCAAAACGTTCTTCTCTTCACGTCTGCATTTTGTGCATTATTCTGAATGGAAAGTTACGATCGTGAACAGATAATCTATGTTGGTCTAGTACTTTTTAATTTCTACGGAAGCCTGATGCTGCCAACCCAGACACAAGTTAGAAACATCTTGCTGTACCGTATAGTCATTATATTTATTGTGCGGGGTGGTACTAATATAATGGTACACCTTATCATTACCTAGGAGGGGTAAGTTTAGTGTAGAGCCCCAGGTTCATCTCAACTCGACGGTTCCTGAGGCAAAGGTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGGTTTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGT]
[+] EMBL CA590601 [CATATATCATAAAACAGCTCCAAACAGTTTCATCACCTTTTCTGTGTTTTTGTGCACATTTAGTCAATATTATGACCAAAACGTTCTTCTCTTCACGTCTGCATTTTGTGCATTATTCTGAATGGAAAGTTACGATCGTGAACAGATAATCTATGTTGGTCTAGTACTTTTTAATTTCTACGGAAGCCTGATGCTGCCAACCCAGACACAAGTTAGAAACATCTTGCTGTACCGTATAGTCATTATATTTATTGTGCGGGGTGGTACTAATATAATGGTACACCTTATCATTACCTAGGAGGGGTAAGTTTAGTGTAGAGCCCCAGGTTCATCTCAACTCGACGGTTCCTGAGGCAAAGGTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGGTTTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGT]
consensusID : consensus_2327#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence
[TGAGGCAAAGGTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGTAATAATCCAGGTTATGAACATTTAAAGGTAGTAACCCAGGTTATGTTCATTTACAGGTACTAATCCAGGTTATATTCATTTACAGGTAATAATCCAGGTTATGTTCACTTTACAGGGTTAATCTGGGTACTCGTTTTGGGGCCACCGCAGGGAATGTCCAAGGTGACATCCTGATCCAGAGGATTTACCCCCCAGACACC]
[+] EMBL FR0060219 [TGAGGCAAAGGTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGTAATAATCCAGGTTATGAACATTTAAAGGTAGTAACCCAGGTTATGTTCATTTACAGGTACTAATCCAGGTTATATTCATTTACAGGTAATAATCCAGGTTATGTTCACTTTACAGGGTTAATCTGGGTACTCGTTTTGGGGCCACCGCAGGGAATGTCCAAGGTGACATCCTGATCCAGAGGATTTACCCCCCAGACACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2327#1 ------------------------------------------------------------
consensus_2327#3 ------------------------------------------------------------
consensus_2327#0 CAGTTTCATCACCTTTTCTGTGTTTTTGTGCACATTTAGTCAATATTATGACCAAAACGT 60
consensus_2327#2 ------------------------------------------------------------
consensus_2327#1 ------------------------------------------------------------
consensus_2327#3 ------------------------------------------------------------
consensus_2327#0 TCTTCTCTTCACGTCTGCATTTTGTGCATTATTCTGAATGGAAAGTTACGATCGTGAACA 120
consensus_2327#2 ------------------------------------------------------------
consensus_2327#1 ------------------------------------------------------------
consensus_2327#3 ------------------------------------------------------------
consensus_2327#0 GATAATCTATGTTGGTCTAGTACTTTTTAATTTCTACGGAAGCCTGATGCTGCCAACCCA 180
consensus_2327#2 ------------------------------------------------------------
consensus_2327#1 ------------------------------------------------------------
consensus_2327#3 ----------------------------------------------------------TG 2
consensus_2327#0 GACACAAGAGGGGTAAGTTTAGTGTAGAGCTCCAGGTTCATCTCAACTCGACGGTTCCTG 240
consensus_2327#2 ------------------------------------------------------CATATA 6
consensus_2327#1 -----------------CTGGTCGCTAC-CCGCTCCTGTGCTCGATTTGGACCCTAAAGC 42
consensus_2327#3 AGGCAAAGGTGACAGAACTGGTCGCTAC-CCGCTCCTGTGCTCGATTTGGACGCTAAAGC 61
consensus_2327#0 AGGCAAAGGTGACAGAACTGGTCGCTAC-CCGCTCCTGTGCTCGATTTGGACGCTAAAGC 299
consensus_2327#2 TCATAAAACAGCTCCAAACAGTTTCATCACCTTTTCTGTGTTTT-TGTGCACATTTAGTC 65
** * * ** * ***** * * ** ** * * *
consensus_2327#1 CTGAAGGTAATAATCCAGGTTATGAACATTTAAAGGGTTTAATCT---GGTTA--CTCGT 97
consensus_2327#3 CTGAAGGTAATAATCCAGGTTATGAACATTTAAAGGTAGTAACCCA--GGTTATGTTCAT 119
consensus_2327#0 CTGAAGG-----------GTT------------------TAATCT---GGTTA--CTCGT 325
consensus_2327#2 ---AATATTATGACCAAAACGTTCTTCTCTTCACGTCTGCATTTTGTGCATTATTCTGAA 122
** * *** *
consensus_2327#1 TT--TGGTGCCACCGCAGGGAATGT---CCAGGTGGACATCCTGATCCAGAGGATTTAC- 151
consensus_2327#3 TTACAGGTACTAATCCAGGTTATAT---TCATTTACAGGTAATAATCCAGGTTATGTTC- 175
consensus_2327#0 TT--TGGTGCCACCGCAGGGAATGT---CCAGGTGGACATCCTGATCCAGAGGATTTAC- 379
consensus_2327#2 TGGAAAGTTACGATCGTGAACAGATAATCTATGTTGGTCTAGTACTTTTTAATTTCTACG 182
* ** * * * * * * * * * * *
consensus_2327#1 --CCCCAGACACCAGCAACGGAAACACAGGAGAAGACTCTCTGACACAGATGGCCACACC 209
consensus_2327#3 --ACTTT-ACAGGGTTAATCTGGGTACTCGTTTTGGGGCCACCGCAGGGAATGTCCAAGG 232
consensus_2327#0 --CCCCAGACACCAGCAACGGAAACACAGGAGAAGACTCTCTGACACAGATGGCCACACC 437
consensus_2327#2 GAAGCCTGATGCTGCCAACCCAGACACAAGTTAGAAACATCTTGC-TGTACCGT--ATAG 239
* ** ** * * * *
consensus_2327#1 TGAACATTCTTACAACCTGCTGGTTGATGAGGCAAATAATCAGCTAAAAGGGCAAACTAA 269
consensus_2327#3 TGA-CATCCTGAT--CCAGAGGATTTACCCCCCAGACACC-------------------- 269
consensus_2327#0 TGAACATTCTTACAACCTGCTGGTTGATGAGGCAAATAATCAGCTAAAAGGGCAAACTAA 497
consensus_2327#2 TCATTATATTTATTGTGCGGGGTGGTACTAATATAATGGTACACCTTATCATTACCTAGG 299
* * ** * * * * * *
consensus_2327#1 AGCAGTAATGCCAGAAAATGCACTTATGAA-ACATGAAGACAGGAAGGATTTTGCTCAGG 328
consensus_2327#3 ------------------------------------------------------------
consensus_2327#0 AGCAGTAATGCCAGAAAATGCACTTATGAA-ACATGAAGACAGGAAGGATTTTGCTCAGG 556
consensus_2327#2 AGGGGTAAGTTTAGTGTAGAGCCCCAGGTTCATCTCAACTCGACGGTTCCTGAGGCAAAG 359
consensus_2327#1 TCCAGGACTCGGATGAGTTACCAGACCGCCCCCCTCCCTGTGGGATGTCATCCACCAAAT 388
consensus_2327#3 ------------------------------------------------------------
consensus_2327#0 TCCAGGACTCGGATGAGTTACCAGACCGCCCCCCTCCCTGTGGGATGTCATCCACCAAAT 616
consensus_2327#2 GTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGGT 419
consensus_2327#1 GCATCCTGTCTGATGAAGTGACCCCAAAGACTGAAGGTTGGGCAATGGAGTGGCACAAAC 448
consensus_2327#3 ------------------------------------------------------------
consensus_2327#0 GCATCCTGTCTGATGAAGTGACCCCAAAGACTGAAGGTTGGGCAATGGAGTGGCACAAAC 676
consensus_2327#2 TTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGT-------------- 465
consensus_2327#1 ATCAAATGGCCGCGATCAGCAGTGAGACATTTGACAGCCTCCTGAAGACAAGTCCTGAAT 508
consensus_2327#3 ------------------------------------------------------------
consensus_2327#0 ATCAAATGGCCGCGATCAGCAGTGAGACAT------------------------------ 706
consensus_2327#2 ------------------------------------------------------------
consensus_2327#1 ACTCTGGTTGTAGAAGCAACATGGCCACCTTTGTCATAACAAGA 552
consensus_2327#3 --------------------------------------------
consensus_2327#0 --------------------------------------------
consensus_2327#2 --------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |