cluster # 233

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Takifugu rubripes
cluster # 233 cluster # 233 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_233#0 length = 587 sequences # 1

consensus_233#1 length = 552 sequences # 1

consensusID : consensus_233#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence

                              [GTCGTCGACTTTCCGTTTCTTTCTGGGTTCTTGCGGTTTAGTCTCGGAAATGTCCGCGCTCAGAACCGGTTTTAAGCTGCTGCTGTTCGCTACAGCCGCCGTCCTGGTCGTCTTACTCCTGAGACACTGGATGGCCACGAAGCAGACAGGACCATGAACAGGCCTTCTCCAAGGTGGTGGTGGAGCTCAGGAAGAGGTACCCGGGCCACATCCTGCCAGACGAGGAGCTGCAGTGGGTGTTTGTGAACGCCGGCGGCTGGATGGGCTCCATGTGTCTCCTCCACGCGTCGCTCACCGAGTACCTGCTGCTCTTTGGTACCGCTGTTGACACAGGAGGTCACTCAGGTGAGTGTTGGCGGCTGGAGCTGGAACAGCCGCACAACCCCAGGCAGGTTCCAGGAGAGCATTTTATAATAACAGTGAGCTGAAAATACACTCTGACAGGGGAGCAGCACTGGGGGGCGGATCTGAGGCTGTCGTCGGGGGTTTTCTAGTGGTTTTAAGTCTTAAAGTTGCCTGTTAATGCTGCCATGTTTGACATTCATAACAGTCCTGGATCAGTTTAATGGACAATTCCCTTCATGTGA]

[+] EMBL CA330833             [GTCGTCGACTTTCCGTTTCTTTCTGGGTTCTTGCGGTTTAGTCTCGGAAATGTCCGCGCTCAGAACCGGTTTTAAGCTGCTGCTGTTCGCTACAGCCGCCGTCCTGGTCGTCTTACTCCTGAGACACTGGATGGCCACGAAGCAGACAGGACCATGAACAGGCCTTCTCCAAGGTGGTGGTGGAGCTCAGGAAGAGGTACCCGGGCCACATCCTGCCAGACGAGGAGCTGCAGTGGGTGTTTGTGAACGCCGGCGGCTGGATGGGCTCCATGTGTCTCCTCCACGCGTCGCTCACCGAGTACCTGCTGCTCTTTGGTACCGCTGTTGACACAGGAGGTCACTCAGGTGAGTGTTGGCGGCTGGAGCTGGAACAGCCGCACAACCCCAGGCAGGTTCCAGGAGAGCATTTTATAATAACAGTGAGCTGAAAATACACTCTGACAGGGGAGCAGCACTGGGGGGCGGATCTGAGGCTGTCGTCGGGGGTTTTCTAGTGGTTTTAAGTCTTAAAGTTGCCTGTTAATGCTGCCATGTTTGACATTCATAACAGTCCTGGATCAGTTTAATGGACAATTCCCTTCATGTGA]




>consensus_233#0
GTCGTCGACTTTCCGTTTCTTTCTGGGTTCTTGCGGTTTAGTCTCGGAAATGTCCGCGCT
CAGAACCGGTTTTAAGCTGCTGCTGTTCGCTACAGCCGCCGTCCTGGTCGTCTTACTCCT
GAGACACTGGATGGCCACGAAGCAGACAGGACCATGAACAGGCCTTCTCCAAGGTGGTGG
TGGAGCTCAGGAAGAGGTACCCGGGCCACATCCTGCCAGACGAGGAGCTGCAGTGGGTGT
TTGTGAACGCCGGCGGCTGGATGGGCTCCATGTGTCTCCTCCACGCGTCGCTCACCGAGT
ACCTGCTGCTCTTTGGTACCGCTGTTGACACAGGAGGTCACTCAGGTGAGTGTTGGCGGC
TGGAGCTGGAACAGCCGCACAACCCCAGGCAGGTTCCAGGAGAGCATTTTATAATAACAG
TGAGCTGAAAATACACTCTGACAGGGGAGCAGCACTGGGGGGCGGATCTGAGGCTGTCGT
CGGGGGTTTTCTAGTGGTTTTAAGTCTTAAAGTTGCCTGTTAATGCTGCCATGTTTGACA
TTCATAACAGTCCTGGATCAGTTTAATGGACAATTCCCTTCATGTGA

consensusID : consensus_233#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence

                              [TTCTAGTGGTTTTAAGTCTTAAAGTTGTCTGTCAATGCTGCCATGTTTGACATTCATAACAGTCCTGGATCAGTTTAATGGACAATTCCCTTCATGTGAGTGGACATCCCCTCTTGGAGCTTGTCTCTTTGGGCTTTTTTAATGAGTCGATAGAGAAGTGTGATGGTCTCCGTCTTTGCTGCGTCAGGTCGTTACTGGGCTGAGATCTCCGACACCGTCATATCTGGATTTTTCAGACAGTGGAAGGAGGGCACCACCAAGAGCGACATATTCTACCCTGGTAAGGGTTCCATCCGTCACAGCTGAGTGAAGCACGCCGTGTCTCCGGGTGAAGTCTCATTCTCCTTGTTCAGGCGACACGATCGTGCACGCTGTTGGCGAGGCCACATCAGTCCAGTGGAGCGCTGGGACGTGGATGGTGGAGTACGGCCGAGGGTTTATCCCGTCCACGCTGGGCTTCGCTCTGGCAGACACTCTGTTCAGCACGCAGGATTTCCTCACCATGTTCTACACCGTCCGGGTCTACGCCAGGAGTCTGCTGCTGGAGGCCGG]

[+] EMBL CA329921             [TTCTAGTGGTTTTAAGTCTTAAAGTTGTCTGTCAATGCTGCCATGTTTGACATTCATAACAGTCCTGGATCAGTTTAATGGACAATTCCCTTCATGTGAGTGGACATCCCCTCTTGGAGCTTGTCTCTTTGGGCTTTTTTAATGAGTCGATAGAGAAGTGTGATGGTCTCCGTCTTTGCTGCGTCAGGTCGTTACTGGGCTGAGATCTCCGACACCGTCATATCTGGATTTTTCAGACAGTGGAAGGAGGGCACCACCAAGAGCGACATATTCTACCCTGGTAAGGGTTCCATCCGTCACAGCTGAGTGAAGCACGCCGTGTCTCCGGGTGAAGTCTCATTCTCCTTGTTCAGGCGACACGATCGTGCACGCTGTTGGCGAGGCCACATCAGTCCAGTGGAGCGCTGGGACGTGGATGGTGGAGTACGGCCGAGGGTTTATCCCGTCCACGCTGGGCTTCGCTCTGGCAGACACTCTGTTCAGCACGCAGGATTTCCTCACCATGTTCTACACCGTCCGGGTCTACGCCAGGAGTCTGCTGCTGGAGGCCGG]




>consensus_233#1
TTCTAGTGGTTTTAAGTCTTAAAGTTGTCTGTCAATGCTGCCATGTTTGACATTCATAAC
AGTCCTGGATCAGTTTAATGGACAATTCCCTTCATGTGAGTGGACATCCCCTCTTGGAGC
TTGTCTCTTTGGGCTTTTTTAATGAGTCGATAGAGAAGTGTGATGGTCTCCGTCTTTGCT
GCGTCAGGTCGTTACTGGGCTGAGATCTCCGACACCGTCATATCTGGATTTTTCAGACAG
TGGAAGGAGGGCACCACCAAGAGCGACATATTCTACCCTGGTAAGGGTTCCATCCGTCAC
AGCTGAGTGAAGCACGCCGTGTCTCCGGGTGAAGTCTCATTCTCCTTGTTCAGGCGACAC
GATCGTGCACGCTGTTGGCGAGGCCACATCAGTCCAGTGGAGCGCTGGGACGTGGATGGT
GGAGTACGGCCGAGGGTTTATCCCGTCCACGCTGGGCTTCGCTCTGGCAGACACTCTGTT
CAGCACGCAGGATTTCCTCACCATGTTCTACACCGTCCGGGTCTACGCCAGGAGTCTGCT
GCTGGAGGCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_233#0      --------GTCGTCGACTTTCCGTTTCTTTCTGGGTTCT--TGCGGTTTAGTCTCGGAAA 50
consensus_233#1      TTCTAGTGGTTTTAAGTCTTAAAGTTGTCTGTCAATGCTGCCATGTTTGACATTCATAAC 60
                             **  *     **    ** * * *   * **     * ** *   **  ** 

consensus_233#0      TGTCCGCGCTCAGAACCGGTTTTAAGCTGCTGCTGTTCGCTACAGCCGCCGTCCTGGTCG 110
consensus_233#1      AGTCCTGGATCAGTTTAATGGACAATTCCCTTCATGTGAGTGGACATCCCCTCTTGGAGC 120
                      ****  * ****          **    ** *   *   *  *    ** ** ***   

consensus_233#0      TCTTACTCCTGAGACACTGGATGGCCACGAAGCAGACAGGACCATGAACAGGCCTTCTCC 170
consensus_233#1      TTGTCTCTTTGGGCTTTTTTAATGAGTCGATAGAGA-AGTGTGATGGTCTCCGTCTTTGC 179
                     *  *     ** *    *  *  *   ***   *** **    ***  *      * * *

consensus_233#0      AAGGTGGTGGTGGAGCTCAGGAAGAGGTACCCGGGCCACATCCTGCCAGACGAGGAGCTG 230
consensus_233#1      TGCGTCA-GGTCGTTACTGGGCTGAGAT-CTCCGACACCGTCATATCTGGATTTTTCAGA 237
                        **   *** *      **  *** * * * * *  * ** *  * *           

consensus_233#0      CAGTGGGTGTTTGTGAACGCCGGCGGCTGGATGGGCT--CCATGTGTCTCCTCCACGCGT 288
consensus_233#1      CAGTGGAAGGAGGGCACCACCAAGAGCGACATATTCTACCCTGGTAAGGGTTCCATCCGT 297
                     ******  *   *  * * **    **   **   **  **  **      ****  ***

consensus_233#0      CGCTCACCGAGTACCTGCTGCTCTTTGGTACCGCTGTTGACACAGGAGG-TCACTCAGGT 347
consensus_233#1      CACA-GCTGAGTGAAGCACGCCGTGTC-TCCGGGTGAAGTCTCATTCTCCTTGTTCAGGC 355
                     * *   * ****       **  * *  * * * **  * * **      *   ***** 

consensus_233#0      GA-GTGTTGGCGGCTGGAGCTGGAACAGCCGCACAACCCCAGGCAGGTTCCAGGAGAGCA 406
consensus_233#1      GACACGATCGTGCACGCTGTTGGCGAGGCCACATCAGTCCAGTGGAGCGCTGGGACG--- 412
                     **   * * * *   *  * ***    *** **  *  ****    *  *  ***     

consensus_233#0      TTTTATAATAACAGTGAGCTGAAAATACACTCTGACAGGG--GAGCAGCACTGGGGGGCG 464
consensus_233#1      -TGGATGGTGGAGTACGGCCGAGGGTTTATCCCGTCCACGCTGGGCTTCGCTCTGGCAGA 471
                      *  **  *        ** **   *  *  * * *   *  * **  * **  **    

consensus_233#0      GATCTGAGGCTGTCGTCGGGGGTTTTCTAGTG-GTTTTAAGTCTTAAAGTTGCCTGTTAA 523
consensus_233#1      CACTCTGTTCAGCACGCAGGATTTCCTCACCATGTTCTACACCGTCCGGGTCTACGCCAG 531
                      *       * *    * **  **    *    *** **   * *   * *    *  * 

consensus_233#0      TGCTGCCATGTTTGACATTCATAACAGTCCTGGATCAGTTTAATGGACAATTCCCTTCAT 583
consensus_233#1      GAGTCTGCTGCTGGAGGCCGG--------------------------------------- 552
                        *    ** * **                                             

consensus_233#0      GTGA 587
consensus_233#1      ----

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)