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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence
[CGTTGATAAAGTCGTTTGCAGCAGGTATGTTGTGGTCATTACACTATTAAAGGGGAACTCTTGGTTTGCTCGGACACAAATCATGTACCTGTACCTCCTGGGCCTGCTGCTTTTCTACTACCTGTACCGACGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTACATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGGATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTGCTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGTTGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGCTTATGGGCTGTGGTGAACAACGCAGGCGTGTCCGTTCCATCTGCCCCCTGTGACTGGCTCACCATCGATGACTACGAATCCATGCTGCAAGTCAATTTGAACGGCGTAATCGCCGTGACCCTGAGCGTCCTGCCGCTCATCAAGAAGGCCAGAGGAAGGGTGGTCAACGTGGCCAGTGTGTTTGGGAGGGTCGCGGCCACAGGAGGTCCCTACATTGTCTCCAAGTACGGCGTGGAGGGGTTCAATGACAGTCTCAGGTTAAATATGGCACCCTTTGGTGTCAAGGTCCTCTGCATTGAGCCAGGCTTCTTCAAGACCAATGTGACTGATGTTGCCATCATCAGCAAAAGTGCCAAAATTGTGTGGGACAGATTACCCCAGGATGTCCAGGACGAC]
[+] EMBL CA588112 [CGTTGATAAAGTCGTTTGCAGCAGGTATGTTGTGGTCATTACACTATTAAAGGGGAACTCTTGGTTTGCTCGGACACAAATCATGTACCTGTACCTCCTGGGCCTGCTGCTTTTCTACTACCTGTACCGACGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTACATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGGATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTGCTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGTTGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGCTTATGGGCTGTGGTGAACAACGCAGGCGTGTCCGTTCCATCTGCCCCCTGTGACTGGCTCACCATCGATGACTACGAATCCATGCTGCAAGTCAATTTGAACGGCGTAATCGCCGTGACCCTGAGCGTCCTGCCGCTCATCAAGAAGGCCAGAGGAAGGGTGGTCAACGTGGCCAGTGTGTTTGGGAGGGTCGCGGCCACAGGAGGTCCCTACATTGTCTCCAAGTACGGCGTGGAGGGGTTCAATGACAGTCTCAGGTTAAATATGGCACCCTTTGGTGTCAAGGTCCTCTGCATTGAGCCAGGCTTCTTCAAGACCAATGTGACTGATGTTGCCATCATCAGCAAAAGTGCCAAAATTGTGTGGGACAGATTACCCCAGGATGTCCAGGACGAC]
[+] EMBL CA589529 [ CCTCCTGGGCCTGCTGCTTTTCTACTACCTGTACCGACGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTACATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGGATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTGCTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGTTGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGCTTATGGGCTGTGGTGAACAACGCAGGCGTGTCCGTTCCATCTGCCCCCTGTGACTGGCTCACCATCGATGACTACGAATCCATGCTGCAAGTCAATTTGAACGGCGTAATCGCCGTGACCCTGAGCGTCCTGCCGCTCATCAAGAAGGCCAGAGGAAGGGTGGTCAACGTGGCCAGTGTGTTTGGGAGGGTCGCGGCCACAGGAGGTCCCTACATTGTCTCCAAGTACGGCGTGGAGGGTTTCAATGACAGTCTCAGGTTAAATATGGCACCCTTTGGTGTCAAGGTCCTCTGCATTGAGCCAGGCTTCTTCAAGACC ]
consensusID : consensus_2337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 694 fasta sequence
[TTTAATCCCACGGCTGCTCTTAACAAACCGTTTCAGACCGCCGATAAAGTCGTTTGCAGCAGTCATGTACCTGTACCTCCTGGGCCTGCTGCTTTTCTACTACCTGTACCGATGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTACATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGGATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTGCTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGTTGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGGTTATGGGCTGTGGTGAACAACGCAGGCGTGTCCGTTCCATCAGGCCCCTGTGACTGGCTCACCATCGACGACTACGAATCCATGCTGGAAGTGAACCTGAACGGCGTGATCGCAGTGACCCTGAGCGTCCTGCCGCTCATCAAGAAGGCCAGAGGAAGGGTGGTCAACGTGGCCAGTGTGGCAGGGAGGGTCGGGGCCAGAGGAGGCCCCTACAGCGTCTCCAAGTACGGCGTGGAGGGTTTCAACGACAGTCTCAGGTTGAACATGGCGCCGTTTGGTGTGAAAGTCATCTGCATTGAGCCCGGCTACTTCAAG]
[+] EMBL CA590622 [TTTAATCCCACGGCTGCTCTTAACAAACCGTTTCAGACCGTCGATAAAGTCGTTTGCAGCAGTCATGTACCTGTACCTCCTGGGCCTGCTGCTTTTCTACTACCTGTACCGATGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTACATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGGATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTGCTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGTTGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGCTTATGGGCTGTGGTGAACAACGCAGGCGTGTCCGTTCCATCTGCCCCCTGTGACTGGCTCACCATCGATGACTACGAATCCATGCTGCAAGTCAATTTGAACGGCGTAATCGCCGTGACCCTGAGCGTCCTGCCGCTCATCAAGAAGGCCAGAGGAAGGGTGGTCAACGTGGCCAGTGTGTTTGGGAGGGTCGCGGCCACAGGAGGTCCCTACATTGTCTCCAAGTACGGCGTGGAGGGTTTC ]
[+] EMBL CA588298 [ tcCTGTTAAAGTCGTTTGCAGCAGTCATGTACCTGTACCTCCTGCGTCTGCTGCTTTTCTACTACCTGTACCGATGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTACATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGGATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTGCTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGTTGCAGCAATGATCAAGGACAAAGTGGGGGNGnccaag ]
[+] EMBL BU807344 [ GTACCTCCTGGGCCTGCTGCTTTTCTACTACCTGTACCGACGGATCAGGGAGCTGCCCAGAGTCCCCGACATGGGCAGCAAGTATGTGTACATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGGATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTGCTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGTTGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGTTTATGGGCTGTGGTGAACAACGCAGGCGTGTCCGTTCCATCAGGCCCCTGTGACTGGCTCACCATTGACGACTACAAATCCATGCTGGAAGTGAACCTAAATGGCGTGATCTCAGTGACCCTGAGCGTCCTGCCGCTCATCAAGAAGGCCAGAGGAAGGGTGGTCAACATGGCCAGTGTAGCAGGGAGGGTCAGTATCAGTGGAGGCCCCTACTGCGTCTCCAAGTTTGGCGTCGAGGCTTTCAACGACAGTCTCAGGTTGAACATGGCGCCGTTTGGTGTGAAAGTCATCTGCATTGAGCCCGGCTACTTCAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2337#0 CGTTGATAAAGTCGTTTGCAGCAGGTATGTTGTGGTCATTACACTATTAAAGGGGAACTC 60
consensus_2337#1 ---------------TTTAATCCCACG-GCTGCTCTTAACAAACCGTTTCAGACCGCCGA 44
** * * * ** * * * ** ** ** *
consensus_2337#0 TTGGTTTGCTCGGACACAAATCATGTACCTGTACCTCCTGGGCCTGCTGCTTTTCTACTA 120
consensus_2337#1 TAAAGTCGTTTG--CAGCAGTCATGTACCTGTACCTCCTGGGCCTGCTGCTTTTCTACTA 102
* * * * * ** * ****************************************
consensus_2337#0 CCTGTACCGACGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTA 180
consensus_2337#1 CCTGTACCGATGGATCAGGGAGCTGCCCAGAGTCCCCGACAAGGGCAGCAAGTATGTGTA 162
********** *************************************************
consensus_2337#0 CATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGG 240
consensus_2337#1 CATCACCGGCTGCGACTCTGGCTTTGGCAACCTCCTGGCTCGTCATCTGGACAAGCAGGG 222
************************************************************
consensus_2337#0 ATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTG 300
consensus_2337#1 ATTCAGGGTGATCGCCTCCTGCTTCACCGAAAAGGGGGAAGAAGACCTGAAGAAGTCCTG 282
************************************************************
consensus_2337#0 CTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGT 360
consensus_2337#1 CTCCGGTAACCTGATTACAACACACCTAGACGTCAGGTCGAAGGAGAGCGTTGCCAAAGT 342
************************************************************
consensus_2337#0 TGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGCTTATGGGCTGTGGTGAACAACGC 420
consensus_2337#1 TGCAGCAATGATCAAGGACAAAGTGGGGCAGCGGGGGTTATGGGCTGTGGTGAACAACGC 402
************************************ ***********************
consensus_2337#0 AGGCGTGTCCGTTCCATCTGCCCCCTGTGACTGGCTCACCATCGATGACTACGAATCCAT 480
consensus_2337#1 AGGCGTGTCCGTTCCATCAGGCCCCTGTGACTGGCTCACCATCGACGACTACGAATCCAT 462
****************** * ************************ **************
consensus_2337#0 GCTGCAAGTCAATTTGAACGGCGTAATCGCCGTGACCCTGAGCGTCCTGCCGCTCATCAA 540
consensus_2337#1 GCTGGAAGTGAACCTGAACGGCGTGATCGCAGTGACCCTGAGCGTCCTGCCGCTCATCAA 522
**** **** ** ********** ***** *****************************
consensus_2337#0 GAAGGCCAGAGGAAGGGTGGTCAACGTGGCCAGTGTGTTTGGGAGGGTCGCGGCCACAGG 600
consensus_2337#1 GAAGGCCAGAGGAAGGGTGGTCAACGTGGCCAGTGTGGCAGGGAGGGTCGGGGCCAGAGG 582
************************************* ********** ***** ***
consensus_2337#0 AGGTCCCTACATTGTCTCCAAGTACGGCGTGGAGGGGTTCAATGACAGTCTCAGGTTAAA 660
consensus_2337#1 AGGCCCCTACAGCGTCTCCAAGTACGGCGTGGAGGGTTTCAACGACAGTCTCAGGTTGAA 642
*** ******* *********************** ***** ************** **
consensus_2337#0 TATGGCACCCTTTGGTGTCAAGGTCCTCTGCATTGAGCCAGGCTTCTTCAAGACCAATGT 720
consensus_2337#1 CATGGCGCCGTTTGGTGTGAAAGTCATCTGCATTGAGCCCGGCTACTTCAAG-------- 694
***** ** ******** ** *** ************* **** *******
consensus_2337#0 GACTGATGTTGCCATCATCAGCAAAAGTGCCAAAATTGTGTGGGACAGATTACCCCAGGA 780
consensus_2337#1 ------------------------------------------------------------
consensus_2337#0 TGTCCAGGACGAC 793
consensus_2337#1 -------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |