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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 816 fasta sequence
[GTCTGTCGTTTTTGGCTACTCAGCGCGGTTGAGCTCTTGACCCAACAAATCTAACGTTAGTTTGCGTCTGTTTCGTGTCTTTTCCCGACGATGGCGACGCTGGTAGCGAACCGCACGCTGGACGTGAATGCGGGAGCCAGGACGCACACGCAAGCCGTGACCAGGAATTACATCTCCCAGCCCAGGCTAACCTACTCCACCGTGTCGGGTGTTAATGGACCCTTGGTGATTCTGGATAATGTGAAGTTCCCCAGATACGCTGAGATCGTTCACCTGACTCTACCTGATGGGACCAAGCGGAGCGGGCAAGTTCTGGAGGTGATTGGAAGCAAGGCCGTGGTGCAGGTGTTTGAAGGGACTTCAGGCATCGATGCCAAGAAGACGGCCTGTGAGTTCACAGGTGACATCCTGCGTACACCTGTGTCGGAGGACATGCTGGGGCGCGTCTTCAACGGCTCGGGGAAACCCATCGACCGCGGGCCCAGTGTTCTGGCCGAGGACTACCTGGACATCATGGGTCAGCCCATAAACCCTCAGTGCCGCATCTACCCCGAGGAGATGATCCAGACCGGAATCTCGGCCATCGATGGCATGAACAGCATCGCCAGAGGACAGAAGATCCCCATCTTCTCTGCTGCAGGGCTGCCTCATAATGAGATTGCTGCCCAGATCTGTCGACAGGCCGGGCTGGTGCAGAAGTCCAAGGATGTCCTGGACTACAGCGCTGACAACTTCGCCATCGTCTTTGCAGCCATGGGGGTCAACATGGAGACCGCTCGCTTCTTCAAGTCTGACTTCGAGGAGAACGGCTCTATG]
[+] EMBL BU805234 [GTCTGTCGTTTTTGGCTACTCAGCGCGGTTGAGCTCTTGACCCAACAAATCTAACGTTAGTTTGCGTCTGTTTCGTGTCTTTTCCCGACGATGGCGACGCTGGTAGCGAACCGCACGCTGGACGTGAATGCGGGAGCCAGGACGCACACGCAAGCCGTGACCAGGAATTACATCTCCCAGCCCAGGCTAACCTACTCCACCGTGTCGGGTGTTAATGGACCCTTGGTGATTCTGGATAATGTGAAGTTCCCCAGATACGCTGAGATCGTTCACCTGACTCTACCTGATGGGACCAAGCGGAGCGGGCAAGTTCTGGAGGTGATTGGAAGCAAGGCCGTGGTGCAGGTGTTTGAAGGGACTTCAGGCATCGATGCCAAGAAGACGGCCTGTGAGTTCACAGGTGACATCCTGCGTACACCGGTGTNCGAGGACATGCTGGAGCGCGTCTTCGACGGCTCGGGGAAACCCATCGACCGCGGGCCCAGTGTTCTGGCCGAGGACTACCTGGACATCATGGGT ]
[+] EMBL CA589748 [ TGTCGTTTTTGGCTACTCAGCGCGGTTGAGCTCTTGACCCAACAAATCTAACGTTAGTTTGCGTCTGTTTCGTGTCTTTTCCCGACGATGGCGACGCTGGTAGCGAACCGCACGCTGGACGTGAATGCGGGAGCCAGGACGCACACGCAAGCCGTGACCAGGAATTACATCTCCCAGCCCAGGCTAACCTACTCCACCGTGTCGGGTGTTAATGGACCCTTGGTGATTCTGGATAATGTGAAGTTCCCCAGATACGCTGAGATCGTTCACCTGACTCTACCTGATGGGACCAAGCGGAGCGGGCAAGTTCTGGAGGTGATTGGAAGCAAGGCCGTGGTGCAGGTGTTTGAAGGGACTTCAGGCATCGATGCCAAGAAGACGGCCTGTGAGTTCACAGGTGACATCCTGCGTACACCTGTGTCGGAGGACATGCTGGGGCGCGTCTTCAACGGCTCGGGGAAACCCATCGACCGCGGGCCCAGTGTTCTGGCCGAGGACTACCTGGACATCATGGGTCAGCCCATAAACCCTCAGTGCCGCATCTACCCCGAGGAGATGATCCAGACCGGAATCTCGGCCATCGATGGCATGAACAGCATCGCCAGAGGACAGAAGATCCCCATCTTCTCTGCTGCAGGG ]
[+] EMBL CA846101 [ GCTCTTGACCCAACACTTCTAACGTTAGTTTGCGTCTGTTTCGTGTCTTTTCCCGACGATGGCGACGCTGGTAGCGAACCGCACGCTGGACGTGAATGCGGGAGCCAGGACGCACACGCAAGCCGTGACCAGGAATTACATCTCCCAGCCCAGGCTAACCTACTCCACCGTGTCGGGTGTTAATGGACCCTTGGTGATTCTGGATAATGTGAAGTTCCCCAGATACGCTGAGATCGTTCACCTGACTCTACCTGATGGGACCAAGCGGAGCGGGCAAGTTCTGGAGGTGATTGGAAGCAAGGCCGTGGTGCAGGTGTTTGAAGGGACTTCAGGCATCGATGCCAAGAAGACGGCCTGTGAGTTCACAGGTGACATCCTGCGTACACCTGTGTCGGAGGACATGCTGGGGCGCGTCTTCAACGGCTCGGGGAAACCCATCGACCGCGGGCCCAGTGTTCTGGCCGAGGACTACCTGGACATCATGGGTCAGCCCATAAACCCTCAGTGCCGCATCTACCCCGAGGAGATGATCCAGACCGGAATCTCGGCCATCGATGGCATGAACAGCATCGCCAGAGGACAGAAGATCCCCATCTTCTCTGCTGCAGGGCTGCCTCATAATGAGATTGCTGCCCAGATCTGTCGACAGGCCGGGCTGGTGCAGAAGTCCAAGGATGTCCTGGACTACAGCGCTGACAACTTCGCCATCGTCTTTGCAGCCATGGGGGTCAACATGGAGACCGCTCGCTTCTTCAAGTCTGACTTCGAGGAGAACGGCTCTATG]
[+] EMBL FR0062853 [ CGGTGACCAGGAATTACATCTCCCAGCCCA GCTAACCTACTCCACCGTGTCGAGTGTTAATGGACCCTTGCTGAATCTGGATAATGTGAAGTTCCCCAGATACGCTGAGATCGTTCACCTGACTCTACCTGATGGGACCAAGCGGc ]
consensusID : consensus_2338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence
[TGTCGTTTTTGGCTACTCAGCGCGGTTGAGCTCTTGACCCAACAACTCTAACGTTAGTTTGCGTCTGTTTCGTGTCTTTTCCCGACGATGGCGACGCTGGTAGCGAACCGCACGCTGGACGTGAATGCGGGAGCCAGGACGCACACGCAAGCCGTGACCAGGAATTACATCTCCCAGCCCAGGCTAATAGTTGGAGCTTGGACAGACCAACAAGGACTCTGGGTCCGCGTGGACCTGGCCCTGTTGTCTCTGGACTTCCACGTCCTCCCTTGGTCCAAAGACAGGACGTTGTCCCCTGACTGACAGGAACGTGTCCCTTAACTGACAGGAACGTGTCCCCTGACTGACAGGGAGTTGTCCCCTGACTGACGGGGAGTTGTCCCCTGACTGACGGGGAGTTGTCCC]
[+] EMBL CA590589 [TGTCGTTTTTGGCTACTCAGCGCGGTTGAGCTCTTGACCCAACAACTCTAACGTTAGTTTGCGTCTGTTTCGTGTCTTTTCCCGACGATGGCGACGCTGGTAGCGAACCGCACGCTGGACGTGAATGCGGGAGCCAGGACGCACACGCAAGCCGTGACCAGGAATTACATCTCCCAGCCCAGGCTAATAGTTGGAGCTTGGACAGACCAACAAGGACTCTGGGTCCGCGTGGACCTGGCCCTGTTGTCTCTGGACTTCCACGTCCTCCCTTGGTCCAAAGACAGGACGTTGTCCCCTGACTGACAGGAACGTGTCCCTTAACTGACAGGAACGTGTCCCCTGACTGACAGGGAGTTGTCCCCTGACTGACGGGGAGTTGTCCCCTGACTGACGGGGAGTTGTCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2338#0 GTCTGTCGTTTTTGGCTACTCAGCGCGGTTGAGCTCTTGACCCAACAAATCTAACGTTAG 60
consensus_2338#1 ---TGTCGTTTTTGGCTACTCAGCGCGGTTGAGCTCTTGACCCAACAACTCTAACGTTAG 57
********************************************* ***********
consensus_2338#0 TTTGCGTCTGTTTCGTGTCTTTTCCCGACGATGGCGACGCTGGTAGCGAACCGCACGCTG 120
consensus_2338#1 TTTGCGTCTGTTTCGTGTCTTTTCCCGACGATGGCGACGCTGGTAGCGAACCGCACGCTG 117
************************************************************
consensus_2338#0 GACGTGAATGCGGGAGCCAGGACGCACACGCAAGCCGTGACCAGGAATTACATCTCCCAG 180
consensus_2338#1 GACGTGAATGCGGGAGCCAGGACGCACACGCAAGCCGTGACCAGGAATTACATCTCCCAG 177
************************************************************
consensus_2338#0 CCCAGGCTAACCTACTCCACCGTGTCGGGTGTTAATGGACCCTTGGTGATTCTGGATA-A 239
consensus_2338#1 CCCAGGCTAA--TAGT--------TGGAGCTTGGACAGACCAACAAGGACTCTGGGTCCG 227
********** ** * * * * * * **** ** ***** *
consensus_2338#0 TGTGAAGTTCCCCAGATACGCTGAGATCGTTCACCTGACTCTACCTGATGGGACCAAGCG 299
consensus_2338#1 CGTGGACCTGGCCCTGTTGTCTCTGGACTTCCAC---GTCCTCCCTT---GGTCCAAAGA 281
*** * * ** * ** * * * *** ** *** ** ****
consensus_2338#0 GAGCGGGCAAGTTCTGGAGGTGATTGGAAGCAAGGCCGTGGTGCAGGTGTTTGAAGGGAC 359
consensus_2338#1 CAGGACGTTGTCCCC-----TGACTGACAGGAACGT----GTCCCTTAACTGACAGGAAC 332
** * * *** ** ** ** * ** * * *** **
consensus_2338#0 TTCAGGCATCGATGCCAAGAAGACGGCCTGTGAGTTCACAGGTGACATCCTGCGTACACC 419
consensus_2338#1 GTGTCCCCTGACTGACAGGGAGTTGTCCCCTGACTGACGGGGAGTTGTCCCCTG---ACT 389
* * * ** ** * ** * ** *** * ** * *** * **
consensus_2338#0 TGTGTCGGAGGACATGCTGGGGCGCGTCTTCAACGGCTCGGGGAAACCCATCGACCGCGG 479
consensus_2338#1 GACG--GGGAGTTGTCCC------------------------------------------ 405
* ** * * *
consensus_2338#0 GCCCAGTGTTCTGGCCGAGGACTACCTGGACATCATGGGTCAGCCCATAAACCCTCAGTG 539
consensus_2338#1 ------------------------------------------------------------
consensus_2338#0 CCGCATCTACCCCGAGGAGATGATCCAGACCGGAATCTCGGCCATCGATGGCATGAACAG 599
consensus_2338#1 ------------------------------------------------------------
consensus_2338#0 CATCGCCAGAGGACAGAAGATCCCCATCTTCTCTGCTGCAGGGCTGCCTCATAATGAGAT 659
consensus_2338#1 ------------------------------------------------------------
consensus_2338#0 TGCTGCCCAGATCTGTCGACAGGCCGGGCTGGTGCAGAAGTCCAAGGATGTCCTGGACTA 719
consensus_2338#1 ------------------------------------------------------------
consensus_2338#0 CAGCGCTGACAACTTCGCCATCGTCTTTGCAGCCATGGGGGTCAACATGGAGACCGCTCG 779
consensus_2338#1 ------------------------------------------------------------
consensus_2338#0 CTTCTTCAAGTCTGACTTCGAGGAGAACGGCTCTATG 816
consensus_2338#1 -------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |