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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGGTGAACGACAAAGGCGAAATAATGCGTCACTTTTTATTGCGCCTAGAGGATTTGGGTGTTTTTCCGTGGTCGTTGGTGGCTAGCTCGCCTGTGCTAGCAGGAGTCGACCTCGAGGCGAACAGCAGCCATCATGGCACTAAAGTAACAGGCCGAACCAACCTAACGCAGTTTAATCCATAATTGAACAAGAGTACAGTTTGGACGGACATATTTTGCGTTGTTTTTATTAACGTATATATTCCCATTGTTGGGGCGTGTTGCCGCAGCGAGAGCTGCTAGCTAGCATGCTACAACAAGGCCCGCCTCGTTGAATGATTCGATGGTTTCGGTGGTCATAATTTTAATAGAATAATATTGCTGATGTGACTAATCGACATGGTTTTGTATGGTCCACCAGGCCTTGATGTGATTAAAACGGGGATACACGTGCATCTTAATCTCAACTAATTTTTGGCTTTGCTTAATCGCGTCATTCGTCTTTAACGTATTTTTTCTACCGT]
[+] EMBL CA589913 [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGGTGAACGACAAAGGCGAAATAATGCGTCACTTTTTATTGCGCCTAGAGGATTTGGGTGTTTTTCCGTGGTCGTTGGTGGCTAGCTCGCCTGTGCTAGCAGGAGTCGACCTCGAGGCGAACAGCAGCCATCATGGCACTAAAGTAACAGGCCGAACCAACCTAACGCAGTTTAATCCATAATTGAACAAGAGTACAGTTTGGACGGACATATTTTGCGTTGTTTTTATTAACGTATATATTCCCATTGTTGGGGCGTGTTGCCGCAGCGAGAGCTGCTAGCTAGCATGCTACAACAAGGCCCGCCTCGTTGAATGATTCGATGGTTTCGGTGGTCATAATTTTAATAGAATAATATTGCTGATGTGACTAATCGACATGGTTTTGTATGGTCCACCAGGCCTTGATGTGATTAAAACGGGGATACACGTGCATCTTAATCTCAACTAATTTTTGGCTTTGCTTAATCGCGTCATTCGTCTTTAACGTATTTTTTCTACCGT]
consensusID : consensus_2339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 476 fasta sequence
[CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAACAATGAGTGGTTGCCGTGTTTTCATTGGCCACTTGAGCCCCCACGCCAGAGAGAGGGACGTGGAGAAGTTCTTCAAGGGATACGGACGCATACGGGAAATCAACTTGAAGAATGGATTTGGCTTTGTGGAATTTGATGACCACAGAGATGCAGATGATGCCGTTTATGAACTGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCACGATTGAGCATGCTCGCTCCAGGCGGGGCAGAGGTGGCGGCCCAGGAATGGGGCGCTTTGGTGGTGGTGGTGGTGGTGGTGGGGGCGGCGGAGGAGGAGGCGGCTATCGGCCCTCTCGCAGCAGCGGACCCAGATACGGCCCTCCTGTTCGCACTGAGCACAGACTCATTGTGGAGA]
[+] EMBL BU807425 [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAACAATGAGTGGTTGCCGTGTTTTCATTGGCCACTTGAGCCCCCACGCCAGAGAGAGGGACGTGGAGAAGTTCTTCAAGGGATACGGACGCATACGGGAAATCAACTTGAAGAATGGATTTGGCTTTGTGGAATTTGATGACCACAGAGATGCAGATGATGCCGTTTATGAACTGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCACGATTGAGCATGCTCGCTCCAGGCGGGGCAGAGGTGGCGGCCCAGGAATGGGGCGCTTTGGTGGTGGTGGTGGTGGTGGTGGGGGCGGCGGAGGAGGAGGCGGCTATCGGCCCTCTCGCAGCAGCGGACCCAGATACGGCCCTCCTGTTCGCACTGAGCACAGACTCATTGTGGAGA]
[+] EMBL BU808282 [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAACAATGAGTGGTTGCCGTGTTTTCATTGGCCACTTGAGCCCCCACGCCAGAGAGAGGGACGTGGAGAAGTTCTTCAAGGGATACGGACGCATGCGGGAAATCAACTTGAAGAATGGATTTGGCTTTGTGGAATTTGATGACCACAGAGATGCTTATGATGCCGTTTATGAACTGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCACGATTGAGCATGCTCGCTCCAGGCGGGGCAGAGGTGGCGGCCCAGGAATGGGGCGCTTTGGTGGTGGTGGTG ]
[+] EMBL BU806227 [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAACAATGAGTGGTTGCCGTGTTTTCATTGGCCACTTGAGCCCCCACGCCAGAGAGAGGGACGTGGAGAAGTTCTTCAAGGGATACGGACGCATACGGGAAATCAACTTGAAGAATGGATTTGGCTTTGTGGAATTTGATGACCTCTTAGATGCAGATGATGCCGTTTATGAACTGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCACGATTGAGCATGCTCGCTCCAGGCGGGGCAGAGGTGGCGGCCCAGGAATGGGGCGCTTTGGTGG ]
consensusID : consensus_2339#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 93 fasta sequence
[CGAAAACCAGCGTAGCAGACGGTTAAACTTAGAGTAATCGAGGCTAACAGAAGGTCGGGGGTGAACGACAAAGGCGAAATAATGCGCCACTTT]
[+] EMBL FR0059314 [CGAAAACCAGCGTAGCAGACGGTTAAACTTAGAGTAATCGAGGCTAACAGAAGGTCGGGGGTGAACGACAAAGGCGAAATAATGCGCCACTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2339#0 CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACA 60
consensus_2339#2 -------------------------------CGAAAACCAGCGTAGCAGACGGTTAAACT 29
consensus_2339#1 CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACA 60
********************** ****
consensus_2339#0 AAGAGTAATCGAGGCTAACAGAATCTCCAAGGTGAACGACAAAGGCGAAATAATGCGTCA 120
consensus_2339#2 TAGAGTAATCGAGGCTAACAGAAGGTCGGGGGTGAACGACAAAGGCGAAATAATGCGCCA 89
consensus_2339#1 AAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAA----CAATGAGTGGTTGCCGTG--- 113
********************** ** * * * *** * * * *
consensus_2339#0 CTTTTTATTGCGCCTAGAGGATTTGGGTGTTTTTCCGTGGTCGTTGGTGGCTAGCTCGCC 180
consensus_2339#2 CTTT-------------------------------------------------------- 93
consensus_2339#1 -TTTTCATTG-GCC------ACTTGAG----CCCCCA----CGCCAGAGAGAGGGACGT- 156
***
consensus_2339#0 TGTGCTAGCAGGAGTCGACCTCGAGGCGAACAGCAGCCATCATGGCACTAAAGTAACAGG 240
consensus_2339#2 ------------------------------------------------------------
consensus_2339#1 -------GGAGAAGTT--CTTCAAGGGATACGGACGCATACGGGAAATCAACTTGAAGAA 207
consensus_2339#0 CCGAACCAACCTAACGCAGTTTAAT--CCATAATTGAACAAGAG-TACAGTTTGGACGGA 297
consensus_2339#2 ------------------------------------------------------------
consensus_2339#1 TGGATTTGGCTTTGTGGAATTTGATGACCACAGAGATGCAGATGATGCCGTTT--ATGAA 265
consensus_2339#0 CATATTTTGCGTTGTTTTTATTAACGTATATATTCCCATTGTTGGGGCGTGTT-GCCGCA 356
consensus_2339#2 ------------------------------------------------------------
consensus_2339#1 C-TGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCACGATT----GAGCATGCTCGCTCCA 320
consensus_2339#0 GCGAGAGCTGCTAGCTAGCATGCTACAACAAGGCCCGCCTCGTTGAATGATTCGATGGTT 416
consensus_2339#2 ------------------------------------------------------------
consensus_2339#1 GGCGGGGCAG--AGGTGGCGGCCCAGGA-ATGGGGCGCTTTGGTGG-TGGT--GGTGGTG 374
consensus_2339#0 TCGGTGGTCATAATTTTAATAGAATAATATTGCTGATGTGACTAATCGACATGGTTTTGT 476
consensus_2339#2 ------------------------------------------------------------
consensus_2339#1 GTGGTGGGGGCGGCGGAGGAGGAGGCGGCTATCGGCCCTCTCGCAGCAGCGGACCCAGAT 434
consensus_2339#0 ATGGTCCACCAGGCCTTGATGTGATTAAAACGGGGATACACGTGCATCTTAATCTCAACT 536
consensus_2339#2 ------------------------------------------------------------
consensus_2339#1 ACGGCCCTCCTGTTCGCACTGAGCACAGACTCATTGTGGAGA------------------ 476
consensus_2339#0 AATTTTTGGCTTTGCTTAATCGCGTCATTCGTCTTTAACGTATTTTTTCTACCGT 591
consensus_2339#2 -------------------------------------------------------
consensus_2339#1 -------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |