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Takifugu rubripes
cluster # 2340 cluster # 2340       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2340#0 length = 627 sequences # 4  
 consensus_2340#1 length = 529 sequences # 1  
consensusID : consensus_2340#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 627
fasta sequence 
                              [GGATCACCGGCATCCACAGGACCCGCACGATGGCCGAGCTCCCCCCGGTAGAGTGGTGTTCAACCAGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACCATCGTCGACGTGGCCAAGAGACGTGGCATCCGTCTCCCAGCGAAGACGGCGGAGGGGATGAAGCAGCTCATCATCCTCAAACAGCCAGCCACCCTCACCGAGTTCCTGGGCAAGTTCTCCGAGTACATGCACGTGATTGCAGGAGACAGAGAGGCAATAAAGAGGATAGCGTATGAATTTGTTGAGGACAGAGCCAAGGAGGGTGTGATTTATGTGGAGGCCAGGTACAGTCCACACTTCCTGGCAAACACGAAGGTGGATCCTATACCATGGAACCAGGAGGGGAGGGGGATCTGGGCCCAGATGAGGTGGTTCACCTGGTTAACCAGGGCCTGAGGGAGGGGGAGAGGGCCTTCAATATCAAAGCCAGGTCCATTCTATGCTGCATGCGCCACATGCCAAACTGGTCCATGGATATTGTGGAGCTGTGTAAGAAGTATCAGCATGAGGGCGTGGTGGCCATCGATCTGGAAGGTGAAGAATCGCTCAGCAGTGAAGCCAACCCCTGA]

[+] EMBL BU806270             [GGATCACCGGCATCCACAGGACCCGCACGATGGCCGAGCTCCCCCCGGTAGAGTGGTGTTCAACCAGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACCATCGTCGACGTGGCCAAGAGACGTGGCATCCGTCTCCCAGCGAAGACGGCGGAGGGGATGAAGCAGCTCATCATCCTCAAACAGCCAGCCACCCTCACCGAGTTCCTGGGCAAGTTCTTCTAGTACATGCACGTGATTGCAGGAGACAGAGAGGCAATAAAGAGGATAGCGTATGAATTTGTTGAGGACAGAGCCAAGGAGGGTGTGATTTATGTGGAGGCCAGGTACAGTCCACACTTCCTGGCAAACACGAAGGTGGATCCTATACCATGGAACCAGAA  GGAAGGTGATCTGAGCCCAGATGAGGTGGTTCACCTGGTTAACCAGGGCCTGAGGGAGGGGGAGAGGGCCTTCAATATCAAAGCCAGGTCCATTCTATGCTGCATGCGCCACATGCCAAACTGGTCCATGGATATTGTGGAGCTGTGTAAGAAGTATCAGCATGAGGGCGTGGTGGCCATCGATCTGGAAGGTGAAGAATCGCTCAGCAGTGAAGCCAACCCCTGA]
[+] EMBL FR0060041            [                                            CCGGTAGAGTGGTGTTCAACCGGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACCATCGTCGACGTGGCCAAGAGACGTGGCATCCGTCTCCCAGCGAAGACGGCGGAGGGGATGAAGCAGCTCATCATCCTCAAACAGCCAGCCACCCTCACCGAGTTCCTGGGCAAGTTCTCCGAGTACATGCACGTGATTGCAGGAGACAGAGAGGCAATAAAGAGGATAGCGTATGAATTTG                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL FR0059652            [                                                           TCAACCAGCCCAAGGGTGAGCTGCACTTTCACCTCGATGTATCCATCCCCCTCCACACCATCNTCGACGTGGCCAAGATACGTGGCATCCGTCTCCCAGCGAAGACGGCGGAGGGGATCAAGCAGCTCATCATCCTCAAACAGCCAGCCACCCTCACCGAGGTCCTGGGCGAGTTCTTCGAGTACATGCACGTGATTGCAGGAGACAGAGAGGCAATTAAGAGGATAGCGTATGAATTTGTTGAGGACAGAGCCAAGGGGGGGGTGATTTATGTGGGGGCCAGGGACAGTCCACACTTTCTGGCAGACACGAAGGGGGTTCCTGTACCATGGAACCAGGAGGGGAGGGGGTTCTGGGC                                                                                                                                                                                                                  ]
[+] EMBL FR0059114            [                                                            CAGCCAGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACCATCGTCGACGTGGCCAAGAGACGTGGCATCCGTCTCCCAGCGAAGACGGCGGAGGGGATGAAGCAGCTCATCATCCTCAAACAGCCAGCCACCCTCACCGAGTTCCTGGGCAAGTTCTCCGAGTACATGCACGTGATTGCAGGAGACAGAGAGGCAATAAAGAGGATAGCGTATGAATTTGTTGAGGACAGAGCCAAGGAGGGTGTGATTTATGTGGAGGCCAGGTACAGTCCACACTTCCTGGCAAACACGAAGGTGGATCCTATACCATGGAACCA                                                                                                                                                                                                                                       ]




>consensus_2340#0
GGATCACCGGCATCCACAGGACCCGCACGATGGCCGAGCTCCCCCCGGTAGAGTGGTGTT
CAACCAGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACCAT
CGTCGACGTGGCCAAGAGACGTGGCATCCGTCTCCCAGCGAAGACGGCGGAGGGGATGAA
GCAGCTCATCATCCTCAAACAGCCAGCCACCCTCACCGAGTTCCTGGGCAAGTTCTCCGA
GTACATGCACGTGATTGCAGGAGACAGAGAGGCAATAAAGAGGATAGCGTATGAATTTGT
TGAGGACAGAGCCAAGGAGGGTGTGATTTATGTGGAGGCCAGGTACAGTCCACACTTCCT
GGCAAACACGAAGGTGGATCCTATACCATGGAACCAGGAGGGGAGGGGGATCTGGGCCCA
GATGAGGTGGTTCACCTGGTTAACCAGGGCCTGAGGGAGGGGGAGAGGGCCTTCAATATC
AAAGCCAGGTCCATTCTATGCTGCATGCGCCACATGCCAAACTGGTCCATGGATATTGTG
GAGCTGTGTAAGAAGTATCAGCATGAGGGCGTGGTGGCCATCGATCTGGAAGGTGAAGAA
TCGCTCAGCAGTGAAGCCAACCCCTGA

consensusID : consensus_2340#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence 
                              [TCCACAGGACCCGCACGATGGCCGAGCTCCCCCCCCGGTAGAGTGGTGTTCAACCAGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACCATCGTCGACGTGGCCAAGTAAGGGGGCTCTATTTTTGTAGTGGGTCTAAATGTTGGAGACAGGGAGTGCCGGGGAGTGTCGTCTTTTTTCCAAGACATCCCAGCAATGGCTTTTATCCGAGCCCCAACGCTGACGTGCTGGGCATCAGATGCTGGAATGTTGGGAAGTGCTGCCTTAAAACAAGGATAACAGCACAAATCTTCACTAAAACTTTAGTTTTATTCCGTTTTATCACCTGTGTGGATAATTAGCGGGGACCCTTGGAGAGGAGCCAGCCAGCACTTAGAAGGCAGAACTCACGTCAGGACCAAGGTTCAGCGGTCAGGAGACAATAATGGAGCGTTTTTACCACTCAGTTAAGCCCACATTTGCATCGCTGCCCGGCCTGATAATGACTCATATCAGCTGATATTTACAGCGA]

[+] EMBL BU805476             [TCCACAGGACCCGCACGATGGCCGAGCTCCCCCCCCGGTAGAGTGGTGTTCAACCAGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACCATCGTCGACGTGGCCAAGTAAGGGGGCTCTATTTTTGTAGTGGGTCTAAATGTTGGAGACAGGGAGTGCCGGGGAGTGTCGTCTTTTTTCCAAGACATCCCAGCAATGGCTTTTATCCGAGCCCCAACGCTGACGTGCTGGGCATCAGATGCTGGAATGTTGGGAAGTGCTGCCTTAAAACAAGGATAACAGCACAAATCTTCACTAAAACTTTAGTTTTATTCCGTTTTATCACCTGTGTGGATAATTAGCGGGGACCCTTGGAGAGGAGCCAGCCAGCACTTAGAAGGCAGAACTCACGTCAGGACCAAGGTTCAGCGGTCAGGAGACAATAATGGAGCGTTTTTACCACTCAGTTAAGCCCACATTTGCATCGCTGCCCGGCCTGATAATGACTCATATCAGCTGATATTTACAGCGA]




>consensus_2340#1
TCCACAGGACCCGCACGATGGCCGAGCTCCCCCCCCGGTAGAGTGGTGTTCAACCAGCCC
AAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACCATCGTCGACGTG
GCCAAGTAAGGGGGCTCTATTTTTGTAGTGGGTCTAAATGTTGGAGACAGGGAGTGCCGG
GGAGTGTCGTCTTTTTTCCAAGACATCCCAGCAATGGCTTTTATCCGAGCCCCAACGCTG
ACGTGCTGGGCATCAGATGCTGGAATGTTGGGAAGTGCTGCCTTAAAACAAGGATAACAG
CACAAATCTTCACTAAAACTTTAGTTTTATTCCGTTTTATCACCTGTGTGGATAATTAGC
GGGGACCCTTGGAGAGGAGCCAGCCAGCACTTAGAAGGCAGAACTCACGTCAGGACCAAG
GTTCAGCGGTCAGGAGACAATAATGGAGCGTTTTTACCACTCAGTTAAGCCCACATTTGC
ATCGCTGCCCGGCCTGATAATGACTCATATCAGCTGATATTTACAGCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2340#0      GGATCACCGGCATCCACAGGACCCGCACGATGGCCGAGCTCCCCCC--GGTAGAGTGGTG 58
consensus_2340#1      ------------TCCACAGGACCCGCACGATGGCCGAGCTCCCCCCCCGGTAGAGTGGTG 48
                                  **********************************  ************

consensus_2340#0      TTCAACCAGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACC 118
consensus_2340#1      TTCAACCAGCCCAAGGTTGAGCTGCACGTTCACCTCGATGGATCCATCAGGGTCCAGACC 108
                      ************************************************************

consensus_2340#0      ATCGTCGACGTGGCCAAGAGACGTGGCATCCGTCTCCCAGCGAAGACGGCGGAGGGGATG 178
consensus_2340#1      ATCGTCGACGTGGCCAAGTAAGGGGGCTCTATTTTTGTAGTGGGTCTAAATGTTGGAGAC 168
                      ******************  * * ***     * *   ** *         *  **    

consensus_2340#0      AAGCAGCTCATCATCCTCAAACAGCCAGCCACCCTCACCGAGTTCCTGGGCAAGTTCTCC 238
consensus_2340#1      AGGGAGTGC------CGGGGAGTGTCGTCTTTTTTCCAAGACATCCCAGCAATGGCTTT- 221
                      * * **  *      *    *  * *  *     **   **  ***  *  * *   *  

consensus_2340#0      GAGTACATGCACGTGATTGCAGGAGACAGAGAGGCAATAAAGAGGATAGCGTATGAATTT 298
consensus_2340#1      ---TATCCGAGCCCCAACGCTGACG--TGCTGGGCATCAGATGCTGGAATGTTGGGAAGT 276
                         **   *  *   *  ** *  *   *   ****  * *      *  **  * *  *

consensus_2340#0      GTTGAGGACAGAGCCAAGGAGGGTGTGATTTATGTGGAGGCCAGGTACAGTCCACACTTC 358
consensus_2340#1      GCTGC--CTTAAAACAAGGATAACAGCACAAATCTTCACTAAAACTTTAGTTTT--ATTC 332
                      * **       *  ******       *   ** *  *    *  *  ***      ***

consensus_2340#0      CTGGCAAACACGAAGGTGGATCCTATACCATGGAACCAGGAGGGGAGGGGGATCTGGGCC 418
consensus_2340#1      CGTTTTATCACCTGTGTGGATAAT-TAGCGGGGACCCTTGGAGAGGAGCCAGCCAGCACT 391
                      *     * ***    ******  * ** *  *** **  *  * *  *     * *  * 

consensus_2340#0      CAGATGAGGTGGTTCACCTGGTTAACCAGGGCCTGAGGGAGGGGGAGAGGGCCTTCAATA 478
consensus_2340#1      TAGAAGGCAGAACTCACGTCAGGACCAAGGTTCAGCGGTCAGGAGACAATAA-TGGAGCG 450
                       *** *       **** *    * * ***  * * **   ** ** *     *  *   

consensus_2340#0      TCAAAGCCAGGTCCATTCTATGCTGCATGCGCCACA-TGCCAAACTGGTCCATGGATATT 537
consensus_2340#1      TTTTTACCA--CTCAGTTAAGCCCACATTTGCATCGCTGCCCGGCCTGATAATGACTCAT 508
                      *     ***    ** *  *  *  ***  **  *  ****   *  *   ***  *  *

consensus_2340#0      GTGGAGCTGTGTAAGAAGTATCAGCATGAGGGCGTGGTGGCCATCGATCTGGAAGGTGAA 597
consensus_2340#1      ATCAGCTGATATTTACAGCGA--------------------------------------- 529
                       *       * *    **                                          

consensus_2340#0      GAATCGCTCAGCAGTGAAGCCAACCCCTGA 627
consensus_2340#1      ------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)