|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 642 fasta sequence
[TCTGTACGAAATGGTCCACATGTTTGCAAACTTCAAAAGGCATATTTCATTATAAACGGCGGGTATT-TGATTGTCACCGCTTTAGTGAGGTGTAATACTCCGAAACTCTGAGAAAACATGCCCGAAATTAAGGTGACGCCGCTGGGTGCCGGACAGGACGTCGGCCGCAGCTGCATCCTGGTGTCCATCGGAGGCAAAAACATCATGCTCGACTGTGGCATGCACATGGGATACAACGATGATAGACGCTTCCCGGATTTTTCCTACGTCACGCAGAACGGCCGCCTGACGGACTTTCTGGATTGCGTGATCATCAGCCATTTCCACCTGGACCACTGCGGCGCGCTGCCCTTCATGAGCGAGATGGTGGGCTACGACGGGCCCATCTACATGACCCACCCCACCAAGGCCATCTGCCCCATCCTGCTGGAGGACTTCCGGAAGATCACTGTTGACAAAAAGGGAGAAACCAACTTCTTCACCTCACAGATGATCAAAGACTGCATGAAGAAAGTGGTTCCTCTGAACCTCCACCAAACGGTGCAGGTGGACGACGAGCTGGAGAACAAGGCGTA-TTACGCAGGACACGTCCTGGGAGCCGCCATGGTCCAGATTAAAGTGGGCTCAGAGTCGGTCGTCTAC]
[+] EMBL FR0058900 [TCTGTACGAAATGGGCCACATGTTTGCAAACTTCAAAAGGGGGATTTCATTATAAACGGCGGGTATTCCGATTGTCACCGCTTTAGTGAGGTGTAATACTCCGAAACTCTGAGAAAACATGCCCGAAATTAAGGTGACGCCGCTGGGTGCCGGACAGGACGTCGGCCGCAGCTGCATCCTGGGGTCCATCGGAGGCAAAAACATCATGCTCGACTGTGGCATGCACATGGGATACAACGATGATAGACGCTTCCCGGATTTTTCCTACGTCACGCAGAACGGGCGGCTGACGGACTTTCTTGGATGCGTGATCATCAGCCAT ]
[+] EMBL CA590240 [ CTGTACGAAATGGTCCACATGTTTGCAAACTTCAAAAGGCATATTTCATTATAAACGGCGGGTATT TGATTGTCACCGCTTTAGTGAGGTGTAATACTCCGAAACTCTGAGAAAACATGCCCGAAATTAAGGTGACGCCGCTGGGTGCCGGACAGGACGTCGGCCGCAGCTGCATCCTGGTGTCCATCGGAGGCAAAAACATCATGCTCGACTGTGGCATGCACATGGGATACAACGATGATAGACGCTTCCCGGATTTTTCCTACGTCACGCAGAACGGCCGCCTGACGGACTTTCTGGATTGCGTGATCATCAGCCATTTCCACCTGGACCACTGCGGCGCGCTGCCCTTCATGAGCGAGATGGTGGGCTACGACGGGCCCATCTACATGACCCACCCCACCAAGGCCATCTGCCCCATCCTGCTGGAGGACTTCCGGAAGATCACTGTTGACAAAAAGGGAGAAACCCACTTCTTCACCTCACAGATGATCAAAGACTGCATGAAGAAAGTGGTTCCTCTGAACCTCCACCAAACGGTGCAGGTGGACGACGAGCTGGAGAATCAGGCGTATTTACGCAGa ]
[+] EMBL BU807547 [ GTACGAAATGGTCCACATGTTTGCAAACTTCAAAAGGCATATTTCATTATAAACGGCGGGTATT TGATTGTCACCGCTTTAGTGAGGTGTAATACTCCGAAACTCTGAGAAAACATGCCCGAAATTAAGGTGACGCCGCTGGGTGCCGGACAGGACGTCGGCCGCAGCTGCATCCTGGTGTCCATCGGAGGCAAAAACATCATGCTCGACTGTGGCATGCACATGGGATACAACGATGATAGACGCTTCCCGGATTTTTCCTACGTCACGCAGAACGGCCGCCTGACGGACTTTCTGGATTGCGTGATCATCAGCCATTTCCACCTGGACCACTGCGGCGCGCTGCCCTTCATGAGCGAGATGGTGGGCTACGACGGGCCCATCTACATGACCCACCCCACCAAGGCCATCTGCCCCATCCTGCTGGAGGACTTCCGGAAGATCACTGTTGACAAAAAGGGAG ]
[+] EMBL BU807304 [ AAAAGGCATATTTCATTATAAACGGCGGGTATT TGATTGTCACCGCTTTAGTGAGGTGTAATACTCCGAAACTCTGAGAAAACATGCCCGAAATTAAGGTGACGCCGCTGGGTGCCGGACAGGACGTCGGCCGCAGCTGCATCCTGGTGTCCATCGGAGGCAAAAACATCATGCTCGACTGTGGCATGCACATGGGATACAACGATGATAGACGCTTCCCGGATTTTTCCTACGTCACGCAGAACGGCCGCCTGACGGACTTTCTGGATTGCGTGATCATCAGCCATTTCCACCTGGACCACTGCGGCGCGCTGCCCTTCATGAGCGAGATGGTGGGCTACGACGGGCCCATCTACATGACCCACCCCACCAAGGCCATCTGCCCCATCCTGCTGGAGGACTTCCGGAAGATCACTGTTGACAAAAAGGGAGAAACCAACTTCTTCACCTCACAGATGATCAAAGACTGCATGAAGAAAGTGGTTCCTCTGAACCTCCACCAAACGGTGCAGGTGGACGACGAGCTGGAGATCAAGGCGTA TTACGCAGGACACGTCCTGGGAGCCGCCATGGTCCAGATTAAAGTGGGCTCAGAGTCGGTCGTCTAC]
consensusID : consensus_2342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence
[AAACATCATGCTCGACTGTGGCATGCGCATGGNATACAACGATGATGTAAGATGTCTAGTTTTATGGGAGTGATGTGATGGAATTCAGCTCACTCTGGNTCTCACGTCGCAGAGACGCTTCCCGGATTTTTCCTACGTCACGCAGAACGGCCGCCTGACGGACTTTCTGGATTGCGTGATCATCAGGGTCGTTGCTGCCACATTCGTCACTGTCGGCCCGGTGCTCGGCCTCCACCTGACCC]
[+] EMBL FR0060760 [AAACATCATGCTCGACTGTGGCATGCGCATGGNATACAACGATGATGTAAGATGTCTAGTTTTATGGGAGTGATGTGATGGAATTCAGCTCACTCTGGNTCTCACGTCGCAGAGACGCTTCCCGGATTTTTCCTACGTCACGCAGAACGGCCGCCTGACGGACTTTCTGGATTGCGTGATCATCAGGGTCGTTGCTGCCACATTCGTCACTGTCGGCCCGGTGCTCGGCCTCCACCTGACCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2342#0 TCTGTACGAAATGGTCCACATGTTTGCAAACTTCAAAAGGCATATTTCATTATAAACGGC 60
consensus_2342#1 ------------------------------------------------------------
consensus_2342#0 GGGTATTTGATTGTCACCGCTTTAGTGAGGTGTAATACTCCGAAACTCTGAGAAAACATG 120
consensus_2342#1 --------------------------------------------------AAACATCATG 10
* * * ****
consensus_2342#0 CCCGAAATTAAGGTGACGCCGCTGGGTGCCGGACAGGACGTCGGCCGCAGCTGCATCCTG 180
consensus_2342#1 CTCG-----ACTGTGGCA----TGCGCATGGNATACAACGATGATGTAAGATGT---CTA 58
* ** * *** * ** * * * * *** * ** ** **
consensus_2342#0 GTGTCCATCGGAGGCAAAAACATCATGCTCGACTGTGGCATGCACATGGGATACAACGAT 240
consensus_2342#1 GT-TTTATGGGAG-------TGATGTGATGGAATTCAGCT--CACTCTGGNTCTCACGTC 108
** * ** **** ** * ** * ** *** ** * ***
consensus_2342#0 G-ATAGACGCTTCCCGGATTTTTCCTACGTCACGCAGAACGGCCGCCTGACGGACTTTCT 299
consensus_2342#1 GCAGAGACGCTTCCCGGATTTTTCCTACGTCACGCAGAACGGCCGCCTGACGGACTTTCT 168
* * ********************************************************
consensus_2342#0 GGATTGCGTGATCATCAG-----CCATTTCCACCTGGACCACTG-CGGCGCGCTGCCCTT 353
consensus_2342#1 GGATTGCGTGATCATCAGGGTCGTTGCTGCCACATTCGTCACTGTCGGCCCGGTGCTCGG 228
****************** * **** * ***** **** ** *** *
consensus_2342#0 CATGAGCGAGATGGTGGGCTACGACGGGCCCATCTACATGACCCACCCCACCAAGGCCAT 413
consensus_2342#1 CCTCCACCTGACCC---------------------------------------------- 242
* * * **
consensus_2342#0 CTGCCCCATCCTGCTGGAGGACTTCCGGAAGATCACTGTTGACAAAAAGGGAGAAACCAA 473
consensus_2342#1 ------------------------------------------------------------
consensus_2342#0 CTTCTTCACCTCACAGATGATCAAAGACTGCATGAAGAAAGTGGTTCCTCTGAACCTCCA 533
consensus_2342#1 ------------------------------------------------------------
consensus_2342#0 CCAAACGGTGCAGGTGGACGACGAGCTGGAGAACAAGGCGTATTACGCAGGACACGTCCT 593
consensus_2342#1 ------------------------------------------------------------
consensus_2342#0 GGGAGCCGCCATGGTCCAGATTAAAGTGGGCTCAGAGTCGGTCGTCTAC 642
consensus_2342#1 -------------------------------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |