These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 612 fasta sequence [TGCGGCTGTGGTTGTTCTATCGTCCTCTAACTGGGTGGAAAATGGCAGATACATTGACACTTTTCACATCCATCGGCCTCAGGGAGCAGAAAGCGAAAGAAACTCTAAAAAATGAGAGCGCTGAGTTCATCACTTAAGGAAGCAATTGCTCAGGCCCAGCGTGTCTCTGGGTCTGCAGGAGTGGCAAAAGCCACAGGCACATTACTGTACACTATGGTGTCTCGCCTGAAAGACAGCAAACGCTTGGCATTCCTCTCAGACAGTATAGCTCAGAGAAAAATCTGCACAGAGCAACAGCTCTCAGCTGCACTGGACTTTGTGAGGGATCATCCTCAGGATCCCATTAACCAAAAGCAGTTTGACGAAGCTTGTGGAGTCGGCGTTGTAGTTACACCCGAACAGATTGAAAATGCCGTGGAGGCGGTTATCCAGAAGCACAAAGAGCAGCTTTTAAAGGAGAGAAATCGCTTTAACATGGGATTGTTGATGGGTGAGGCCCGCACTGTCCTAAAATGGGCTGATGGAAAAGCCATCAAAAATGAAGTGGATATGCAGGTCCTCCACCTCTTGGGACCTAAGACAGAGGGTGACCTAGAGAAAAATCCAAGAAAG] [+] EMBL CA591300 [TGCGGCTGTGGTTGTTCTATCGTCCTCTAACTGGGTGGAAAATGGCAGATACATTGACACTTTTCACATCCATCGGCCTCAGTGAGCAGAAAGCGAAAGAAACTCTAAAAAATGA AGCGCTGAGTTCATCACTTAAGGAAGCAATTGCTCAGGCCCAGCGTGTCTCTGGGTCTGCAGGAGTGGCAAAAGCCACAGGCACATTACTGTACACTATGGTGTCTCGCCTGAAAGACAGCAAACGCTTGGCATTCCTCTCAGACAGTATAGCTCAGAGAAAAATCTGCACAGAGCAACAGCTCTCAGCTGCACTGGACTTTGTGAGGGATCATCCTCAGGATCCCATTAACCAAAAGCAGTTTGACGAAGCTTGTGGAGTCGGCGTTGTAGTTACACCCGAACAGATTGAAAATGCCGTGGAGGCGGTTATCCAGAAGCACAAAGAGCAGCTTTTAAAGGAGAGAAATCGCTTTAACATGGGATTGTTGATGGGTGAGGCCCGCACTGTCCTAAAATGGGCTGATGGAAAAGCCATCAAAAATGAAGTGGATATGCAGGTCCTCCACCTCTTGGGACCTAAGACAGAGGGTGACCTAGAGAAAAATCCAAGAAAG] [+] EMBL CA590218 [ TGTTCTATCGTCCTCTAACTGGGTGGAAAATGGCAGATACATTGACACTTTTCACATCCATCGGCCTCAGTGAGCAGAAAGCGAAAGAAACTCTAAAAAATGA AGCGCTGAGTTCATCACTTAAGGAAGCAATTGCTCAGGCCCAGCGTGTCTCTGGGTCTGCAGGAGTGGCAAAAGCCACAGGCACATTACTGTACACTATGGTGTCTCGCCTGAAAGACAGCAAACGCTTGGCATTCCTCTCAGACAGTATAGCTCAGAGAAAAATCTGCACAGAGCAACAGCTCTCAGCTGCACTGGACTTTGTGAGGGATCATCCTCAGGATCCCATTAACTAAAAGCAGTTTGACGAAGCTTGTGGAGTCGGCGTTGTAGTTACACCCGAACAGATTGAAAATGCCGTGGAGGCGGTTATCCAGAAGCACAAAGAGCAGCTTTTAAAGGAGAGATATCGCTTTAACATGGGATTGTTGATGGGTGAGGCCCGCACTGTCCTAAAATGGGCTGATGGAAAAGCCATCAAAAATGAAGTGGATATGCAGGTCCTCCACCTCTTGGGACCTAAGACAGAGGGTGACCTAGAGAAAAATCCAAGAAAG] [+] EMBL FR0058049 [ CTCAGGGAGCAGAAAGCGAAAGAAACTCTAAAAAATGAGAGCGCTGAGTTCATCACTTAAGGAAGCAATTGCTCAGGCCCAGCGTGTCTCTGGGTCTGCAGGAGTGGCAAAAGCCACAGGCACATTACTGTACACTATGGTGTCTCGCCTGAAAGACAGCAAACGCTTGGCATTCCTCTCAGACAGTATAGCTCAGAGAAAAATCTGCACAGAGCAACAGCTCTCAGCTGCACTGGACTTTGTGAGGGATCATCCTCAGGATCCCATTAACCAAAAG ] [+] EMBL FR0058245 [ CTCAGGGAGCAGAAAGCGAAAGAAACTCTAAAAAATGAGAGCGCTGAGTTCATCACTTAAGGAAGCAATTGCTCAGGCCCAGCGTGTCTCTGGGTCTGCAGGAGTGGCAAAAGCCACAGGCACATTACTGTACACTATGGTGTCTCGCCTGAAAGACAGCAAACGCTTGGCATTCCTCTCAGACAGTATAGCTCAGAGAAAAATCTGCACAGAGCAACAGCTCTCAGCTGCACTGGACTTTGTGAGGGATCATCCTCAGGATCCCATTAACCAAAAG ] consensusID : consensus_2350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [GGGACCTAAGACAGAGGGTGACCTAGAGAAAAAATCCAAGAAAGCTAAAGGTGATGAAAATGTAGCAAAGAAGGAGGCCACTGCCACGAATGGTCTGGAGGTGGAAGCTGAAGGAAAGTCCCTGATGGACCAACTCAGGGGAGAGGCACTTAAGTTCCACAAACCGGGGGAGAACTTTAAAACTGAAGGCTATGTGGTCACACCAAAAACAATGGAGATGCTGAAAAAGCATCTGGACGAAACCGGTGGACAGATCCGTACTCGTTTTCCTCCTGAGCCAAACGGCATCCTTCACATCGGGCATGCCAAAGCTATCAACTTCAACTTTGGCTACGCTAAAGCAAACAATGGAATTTGTTTCTTGAGATATGATGACACAAATCCAGAGAAAGAAGAGGAGAAGTACTTCACTGCGATCAAGGAGATGGTGGAATGGCTTGGCTACACACCGTACGCTGTCACGCATGCATCGGATCACTTCCAGAAACTGTATGACCTTGCTATGGACCTCATCCGAAGGGGTCATGCGTACGTGTGTCACCAGAAAGTGGACGAACTGAAGGGACATAATATTGCCCAGTCGCCC] [+] EMBL BU807999 [GGGACCTAAGACAGAGGGTGACCTAGAGAAAAAATCCAAGAAAGCTAAAGGTGATGAAAATGTAGCAAAGAAGGAGGCCACTGCCACGAATGGTCTGGAGGTGGAAGCTGAAGGAAAGTCCCTGATGGACCAACTCAGGGGAGAGGCACTTAAGTTCCACAAACCGGGGGAGAACTTTAAAACTGAAGGCTATGTGGTCACACCAAAAACAATGGAGATGCTGAAAAAGCATCTGGACGAAACCGGTGGACAGATCCGTACTCGTTTTCCTCCTGAGCCAAACGGCATCCTTCACATCGGGCATGCCAAAGCTATCAACTTCAACTTTGGCTACGCTAAAGCAAACAATGGAATTTGTTTCTTGAGATATGATGACACAAATCCAGAGAAAGAAGAGGAGAAGTACTTCACTGCGATCAAGGAGATGGTGGAATGGCTTGGCTACACACCGTACGCTGTCACGCATGCATCGGATCACTTCCAGAAACTGTATGACCTTGCTATGGACCTCATCCGAAGGGGTCATGCGTACGTGTGTCACCAGAAAGTGGACGAACTGAAGGGACATAATATTGCCCAGTCGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2350#0 TGCGGCTGTGGTTGTTCTATCGTCCTCTAACTGGGTGGAAAATGGCAGATACATTGACAC 60 consensus_2350#1 --------GGGACCTAAGACAGAGGGTGACCTAGAGAAAAAATCCAAGAAAGCTAAAGGT 52 ** * * * * ** * ***** *** * * * consensus_2350#0 TTTTCACATCCATCGGCCTCAGGGAGCAGAAAGCGAAAGAAACTCTAAAAAATGAGAGCG 120 consensus_2350#1 GATGAAAATGTAGCAAAG--AAGGAGGCCACTGCCACGAATGGTCTGGAGG-TGGAAGC- 108 * * ** * * * **** * ** * * *** * ** *** consensus_2350#0 CTGAGTTCATCACTTAAGGAAGCAATTGCTCAGGCCCAGCGTGTCTCTGGGTCTGCAGGA 180 consensus_2350#1 TGAAGGAAAGTCCCTGATGGACCAA---CTCAGGGG-AGAGGCACTTAAGTTCCACAAAC 164 ** * * * * * * *** ****** ** * ** * ** ** consensus_2350#0 GTGGCAAAAGCCACAGGCACATTACTGTACACTATGGTGTCTCGCCTGAAAGACAGCAAA 240 consensus_2350#1 CGGGGGAGAACTTTAAA------ACTGAAGGCTATGTGGTCACACCAAAAACAATGGAGA 218 ** * * * * **** * ***** *** * ** *** * * * * consensus_2350#0 CGCTTGGCATTCCTCTCAGACAGTATAGCTCAGAGAAAAATCTGCACAGAGCAACAGCTC 300 consensus_2350#1 TGCTGAAAAAGCATCT-GGACGA---AACCGGTGGACAGATCCGTACTCGTTTTCCTC-C 273 *** * * *** *** * * ** * *** * ** * * * consensus_2350#0 TCAGCTGCACTGGACTTTGTG-AGGGATCATCCTCAGGATCCCATTAACCAAAAGCAGTT 359 consensus_2350#1 TGAGCCAAACGGCATCCTTCACATCGGGCATGCCAAAG---CTATCAACTTCAAC---TT 327 * *** ** * * * * * *** * * * * ** *** ** ** consensus_2350#0 TGACGAAGCTTGTGGAGTCGGCGTTGTAGTTACACCCGAACAGATTGAAAATGCCGTGGA 419 consensus_2350#1 TGGCTACGCTAAAGCAAACAATGGAATTTGTTTCTTGAGATATGATGACACAAATCCAGA 387 ** * * *** * * * * * * * * *** * ** consensus_2350#0 GGCGGTTATCCAGAAGCACAA-AGAGCAGCTTTTAAAGGAGAGAAATCGCTTTAACATGG 478 consensus_2350#1 GAAAGAAGAGGAGAAGTACTTCACTGCGATCAAGGAGATGGTGGAATGGCTTGGCTACAC 447 * * ***** ** * ** * * * *** **** * consensus_2350#0 GATTGTTGATGGGTGAGGCCCGCACTGTCCTAAAATGGGCTGATGGAAAAGCCATCAAAA 538 consensus_2350#1 ACCGTACGCTG--TCACGCATGCATCGGATCACTTCCAGAAACTGTATGACCTTGCTA-- 503 * ** * * ** *** * * * ** * * * * * consensus_2350#0 ATGAAGTGGATATGCAGGTCCTCCACCT-CTTGGGACCTAAGACAGAGGGTGACCTAGAG 597 consensus_2350#1 -TGGACCTCATCCGAAGGGGTCATGCGTACGTGTGTCACCAGAAAGTGGACGAACTGAAG 562 ** * ** * *** * * * ** * * *** ** ** ** ** ** consensus_2350#0 AAAAATCCAAGAAAG----------- 612 consensus_2350#1 GGACAT--AATATTGCCCAGTCGCCC 586 * ** ** * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |