These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2353#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 601 fasta sequence [TCGGGGATCGTCGGCAGCGGCAACCCCCCCAGAAATCAGATGAATTAGAAAACCTACGGTCATA-ATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTGCTTTTAAATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATGGGGATCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTGGCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAAGCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCAGACTTCGAGTGGGTGATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCCGGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAGCACAGATCCTTCATCTTTGGTCTGTATGGCGGTTTGGCCGTGCTGGTCACGATGGGCTGGACTTTCATGGCTCTGGTCCTGTCCCACTGCATCATTCTCTACAGCGTCGCCACGGTGAAGAGCAAGCTGATGTGCTTCGCGGCCGGACTT] [+] EMBL BU805583 [TCGGGGATCGTCGGCAGCGGCAACCCCCCCAGAAATTAGATCAATTAGAAAACCTACGGTCATA ATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTGCTTTTAAATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCGGGTGCAAGGGTTACCATGGGGATCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTGGCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAAGCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCAGACTTCGAGTGGGTGATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCCGGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAGCACAGATCCTTCATCTTTGGTCTGTATGGCGGTTTGGCCGTGCTGGTCACGATGGGCTGGACTTTCATGGCTCTGGTCCTGTCCCACTGCATCATTCTCTACAGCGTCGCCACGGTGAAGAGCAAGCTGATG ] [+] EMBL FR0063529 [ CGGCAGCGGCAACCCCCCCAGAAATCAGATGAATTAGAAAACCTACGGTCATAGATCATCGCCACCCCCCCTCCC TTTTTTTTTGTTGCTTTTAAATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATGGGGATCAAGGCTGCTCTCCCCAGATATG ] [+] EMBL BU805527 [ CAGCGGCAACCCCCCCAGAAATCAGATGAATTAGAAAACCTACGGTCATA ATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTGCTTTTAAATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATGGGGGTCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTGGCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAAGCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCAGACTTCGAGTGGGTGATGTGGTTCACCACCCTCCGCAATCATATCCTTTTTGCCCTGGCCGGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAGCACAGATCCTTCATCTTTGGTCTGTATGGCGGTTTGGCCGTGCTGGTCACGATGGGCTGGACTTTCATGGCTCTGGTCCTGTCCCACTGCATCATTCTCTACAGCGTCGCCACGGTGAAGAGCAAGCTGATGTGCTTCGCGGCCGGACTT] [+] EMBL BU805540 [ CAGCGGCAACCCCCCCAGAAATCAGATGAATTAGAAAACCTACGGTCATA ATCATCGCCATCCCCCCTCCCTTTTTTTTTTGTTGCTTTTAAATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATGGGGATCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTGGCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAAGCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCAGACTTCGAGTGGGTGATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCCGGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAGCACAGATCCTTCATCTTTGGTCTGTATGGCGGTTTGGCCGTGCTGGTCACGATGGGCTGGACTTTCATGGCTCTGGTCCTGTCCCACTGCATCATTCTCTACAGCGTCGCCACGGTGAAGAGCAAGCT ] consensusID : consensus_2353#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [TCCTCACTGGTTCGGGGATCGTCGGCAGCGGCAACCCCCCCAGAAATCAGATGAATTAGAAAACCTACGGTCATAATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTGTTGCTTTTAAATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATGGGGATCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTGGCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAAGCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCAGACTTCGAGTGGGTGATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCCGGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAGACGGGTGTAGATGGACGTGAGCACAGATCCTTCATC] [+] EMBL BU805250 [TCCTCACTGGTTCGGGGATCGTCGGCAGCGGCAACCCCCCCAGAAATCAGATGAATTAGAAAACCTACGGTCATAATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTGTTGCTTTTAAATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATGGGGATCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTGGCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAAGCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCAGACTTCGAGTGGGTGATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCCGGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAGACGGGTGTAGATGGACGTGAGCACAGATCCTTCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2353#0 -----------TCGGGGATCGTCGGCAGCGGCAACCCCCCCAGAAATCAGATGAATTAGA 49 consensus_2353#1 TCCTCACTGGTTCGGGGATCGTCGGCAGCGGCAACCCCCCCAGAAATCAGATGAATTAGA 60 ************************************************* consensus_2353#0 AAACCTACGGTCATAATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTG---CTTTTAA 106 consensus_2353#1 AAACCTACGGTCATAATCATCGCCACCCCCCCTCCCTTTTTTTTTTGTTGTTGCTTTTAA 120 ************************************************** ******* consensus_2353#0 ATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATG 166 consensus_2353#1 ATTCATTCTGGGCCAGAAAACCGCCATCTGAAGCAAGGAGCAGGTGCAAGGGTTACCATG 180 ************************************************************ consensus_2353#0 GGGATCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTG 226 consensus_2353#1 GGGATCAAGGCTGCTCTCCCCAGATATGAGCTGTATCTCTACACGGCTGTGCTGGGCCTG 240 ************************************************************ consensus_2353#0 GCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAA 286 consensus_2353#1 GCGCTGATATGGGCCGGCAGTTGGATATTTGAAGCTTCCTCCGAGAACGTGAACAGAAAA 300 ************************************************************ consensus_2353#0 GCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCA 346 consensus_2353#1 GCCTTCAGGGAGAGTGTGAAACCAGGATGGCATTACTTTGGCAGGAAGATGGACGTGGCA 360 ************************************************************ consensus_2353#0 GACTTCGAGTGGGTGATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCC 406 consensus_2353#1 GACTTCGAGTGGGTGATGTGGTTCACCACCTTCCGCAATCATATCCTTTTTGCCCTGGCC 420 ************************************************************ consensus_2353#0 GGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAGCACAGATCCTTCATC 466 consensus_2353#1 GGTCACGTTATCTTTGCAAAGATTCTCACCCTGGTGGCCCCAAAG-ACGGGTG--TAGAT 477 ********************************************* ** * * * consensus_2353#0 TTTGGTCTGTATGGCGGTTTGGCCGTGCTGGTCACGATGGGCTGGACTTTCATGGCTCTG 526 consensus_2353#1 GGACGTGAGCACAGATCCTTCATC------------------------------------ 501 ** * * * ** * consensus_2353#0 GTCCTGTCCCACTGCATCATTCTCTACAGCGTCGCCACGGTGAAGAGCAAGCTGATGTGC 586 consensus_2353#1 ------------------------------------------------------------ consensus_2353#0 TTCGCGGCCGGACTT 601 consensus_2353#1 --------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |