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Takifugu rubripes
cluster # 2354 cluster # 2354       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2354#0 length = 703 sequences # 3  
 consensus_2354#1 length = 470 sequences # 2  
consensusID : consensus_2354#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 703
fasta sequence 
                              [TCCTTATTGAGGAGTCGGTAACTCTGCTGACACATTTCCTATTGCCGCCGCACCAGTGCAATGCCCAGCCTGCAACATTAGCCAGCGACTTTCTCTCCGCTTCCATAACCCTCCAGTGGGGCGACCGTTCCTGGTTTTAAACAAGCTTTTTTCCCCCCTTCGCTTCTCTCGAACGCGCAGCGTCGGATTTCCGGACATGCCGAACATCGTGCTTTTCAGCGGGAGCTCGCACCACGATCTGTCCCAGAAGGTAGCCGATCGGCTGGGGCTGGAACTGGGGAAGGTGGTCACGAAGAAGTTCAGCAACCAGGAGACATGCGTGGAAATCGGGGAAAGCGTACGTGGGGAGGATGTATACATCGTGCAGAGCGGCTGTGGTGAAATTAACGACAACTTGATGGAGTTGCTGATCATGATTAACGCCTGTAAGATCGCCTCCTCGTCCCGCGTCACCGCCGTCATCCCCTGCTTCCCATACGCCCGGCAGGAC-AAAAAAGACAAGAGTCGAGCACCAATATCAGCCAAGCTGGTGGCCAACATGCTGTCTGTGGCCGGCGCTGACCACATTATCACCATGGACCTTCACGCCTCACAGATCCAGGGATTTTTTGACATTGCTGTAGACAATCTTTACGCTGGNCCTGCTGTTCTTAAGTGGATTAAAGAAAACATCCCGGAGTGGAAAAACTGCATAATCGTTTCC]

[+] EMBL CA332893             [TCCTTATTGAGGAGTCGGTAACTCTGCTGACACATTTCCTATTGCCGCCGCACCAGTGCAATGCCCAGCCTGCAACATTAGCCAGCGACTTTCTCTCCGCTTCCATAACCCTCCAGTGGGGCGACCGTTCCTGGTTTTAAACAAGCTTTTTTCCCCCCTTCGCTTCTCTCGAACGCGCAGCGTCGGATTTCCGGACATGCCGAACATCGTGCTTTTCAGCGGGAGCTCGCACCACGATCTGTCCCAGAAGGTAGCCGATCGGCTGGGGCTGGAACTGGGGAAGGTGGTCACGAAGAAGTTCAGCAACCAGGAGACATGCGTGGAAATCGGGGAAAGCGTACGTGGGGAGGATGTATACATCGTGCAGAGCGGCTGTGGTGAAATTAACGACAACTTGATGGAGTTGCTGATCATGATTAACGCCTGTAAGATCGCCTCCTCGTCCCGCGTCACCGCCGTCATCCCCTGCTTCCCATACGCCCGGCAGGAC AAAAAAGACAAGAGTCGAGCACCCATATCAGCCAAGCTGGTGGCCAACATGCTGTCT                                                                                                                                                            ]
[+] EMBL CA590435             [                                                       GTGCAATGCCCAGCCTGCAACATTAGCCAGCGACTTTCTCTCCGCTTCCATAACCCTCCAGTGGGGCGACCGTTCCTGGTTTTAAACAAGCTTTTTTCCCCCCTTCGCTTCTCTCGAACGCGCAGCGTCGGATTTCCGGACATGCCGAACATCGTGCTTTTCAGCGGGAGCTCGCACCACGATCTGTCCCAGAAGGTAGCCGATCGGCTGGGGCTGGAACTGGGGAAGGTGGTCACGAAGAAGTTCAGCAACCAGGAGACATGCGTGGAAATCGGGGAAAGCGTACGTGGGGAGGATGTATACATCGTGCAGAGCGGCTGTGGTGAAATTAACGACAACTTGATGGAGTTGCTGATCATGATTAACGCCTGTAAGATCGCCTCCTCGTCCCGCGTCACCGCCGTCATCCCCTGCTTCCCATACGCCCGGCAGGACAAAAAAAGACAAGAGTCGAGCACCAATATCAGCCAAGCTGGTGGCCAACATGCTGTCTGTGGCCGGCGCTGACCACATTATCACCATGGACCTTCACGCCTCACAGATCCAGGGATTTTTTGACATTGCTGTAGACAATCTTTACGCTGAACCTGCTGTTCTTAAGTGGATTAAAGA                                     ]
[+] EMBL CA590714             [                                                                                         TTTCTCTCCGCTTCCATAACCCTCCAGTGGGGCGACCGTTCCTGGTTTTAAACAAGCTTTTTTCCCCCCTTCGCTTCTCTCGAACGCGCAGCGTCGGATTTCCGGACATGCCGAACATCCTGCTTTTCAGCGGGAGCTCGCACCACGATCTGTCCCAGAAGGTAGCCGATCGGCTGGGGCTGGAACTGGGGAAGGTGGTCACGAAGAAGTTCAGCAACCAGGAGACATGCGTGGAAATCGGGGAAAGCGTACGTGGGGAGGATGTATACATCGTGCAGAGCGGCTGTGGTGAAATTAACGACAACTTGATGGAGTTGCTGATCATGATTAACGCCTGTAAGATCGCCTCCTCGTCCCGCGTCACCGCCGTCATCCCCTGCTTCCCATACGCCCGGCAGGAC AAAAAAGACAAGAGTCGAGCACCAATATCAGCCAAGCTGGTGGCCAACATGCTGTCTGTGGCCGGCGCTGACCACATTATCACCATGGACCTTCACGCCTCACAGATCCAGGGATTTTTTGACATTGCTGTAGACAATCTTTACGCTGGNCCTGCTGTTCTTAAGTGGATTAAAGAAAACATCCCGGAGTGGAAAAACTGCATAATCGTTTCC]




>consensus_2354#0
TCCTTATTGAGGAGTCGGTAACTCTGCTGACACATTTCCTATTGCCGCCGCACCAGTGCA
ATGCCCAGCCTGCAACATTAGCCAGCGACTTTCTCTCCGCTTCCATAACCCTCCAGTGGG
GCGACCGTTCCTGGTTTTAAACAAGCTTTTTTCCCCCCTTCGCTTCTCTCGAACGCGCAG
CGTCGGATTTCCGGACATGCCGAACATCGTGCTTTTCAGCGGGAGCTCGCACCACGATCT
GTCCCAGAAGGTAGCCGATCGGCTGGGGCTGGAACTGGGGAAGGTGGTCACGAAGAAGTT
CAGCAACCAGGAGACATGCGTGGAAATCGGGGAAAGCGTACGTGGGGAGGATGTATACAT
CGTGCAGAGCGGCTGTGGTGAAATTAACGACAACTTGATGGAGTTGCTGATCATGATTAA
CGCCTGTAAGATCGCCTCCTCGTCCCGCGTCACCGCCGTCATCCCCTGCTTCCCATACGC
CCGGCAGGACAAAAAAGACAAGAGTCGAGCACCAATATCAGCCAAGCTGGTGGCCAACAT
GCTGTCTGTGGCCGGCGCTGACCACATTATCACCATGGACCTTCACGCCTCACAGATCCA
GGGATTTTTTGACATTGCTGTAGACAATCTTTACGCTGGNCCTGCTGTTCTTAAGTGGAT
TAAAGAAAACATCCCGGAGTGGAAAAACTGCATAATCGTTTCC

consensusID : consensus_2354#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 470
fasta sequence 
                              [TTTCTCTCCGCTTCCATAACCCTCCAGTGGGGCGACCGTTCCTGGTTTTAAACAAGCTTTTTTCCCCCCTTCGCTTCTCTCGAACGCGCAGCGTCGGATTTCCGGACATGCCGAACATCGTGCTTTTCAGCGGGAGCTCGCACCACGATCTGTCCCAGAAGGTAGCCGATCGGCTGGGGCTGGAACTGGGGAAGGTGGTCACGAAGAAGTTCAGCAACCAGGAGACATGCGTGGAAATCGGGGAAAGCGTACGTGGGGAGGATGTATACATCGTGCAGAGCGGCTGTGGTGAAATTAACGACAACTTGATGGAGTTGCTGATCATGATTAACGCCTGTAAGATCGCCTCCTCGTCCCGCGTCACCGCCGTCATCCCCTGCTTCCCATACGCCCGGCAGGACAAAAAAGACAAGCAGCTCATCCGGCAATTCCAGGTAGTTGAGTGTTTGGTCAACAAACCCCGGAGCCCC]

[+] EMBL CA589188             [TTTCTCTCCGCTTCCATAACCCTCCAGTGGGGCGACCGTTCCTGGTTTTAAACAAGCTTTTTTCCCCCCTTCGCTTCTCTCGAACGCGCAGCGTCGGATTTCCGGACATGCCGAACATCGTGCTTTTCAGCGGGAGCTCGCACCACGATCTGTCCCAGAAGGTAGCCGATCGGCTGGGGCTGGAACTGGGGAAGGTGGTCACGAAGAAGTTCAGCAACCAGGAGACATGCGTGGAAATCGGGGAAAGCGTACGTGGGGAGGATGTATACATCGTGCAGAGCGGCTGTGGTGAAATTAACGACAACTTGATGGAGTTGCTGATCATGATTAACGCCTGTAAGATCGCCTCCTCGTCCCGCGTCACCGCCGTCATCCCCTGCTTCCCATACGCCCGGCAGGACAAAAAAGACAAGCAGCTCATCCGGCAATTCCAGGTAGTTGAGTGTTTGGTCAACAAACCCCGGAGCCCC]
[+] EMBL FR0060249            [                                                      AGCTTTTTTCCCCCCTTCGCTTCTCTCGAACGCGCAGCGTCGGATTTCCGGACATGCCGAACATCGTGCTTTTCAGCGGGAGCTCGCACCACGATCTGTCCCAGAAGGTAGCCGATCGGCTGGGGCTGGAACTGGGGAAGGTGGTCACGAAGAAGTTCAGCAACCAGGAGACATGCGTGGAAATCGGGGAAAGCGTACGTGGGGAGGATGTATACATCGTGCAGAGCGGCTGTGGTGAAATTAACGACAACTTGATGGAGTTGCTGATCATGATTAACGCCTGTAAG                                                                                                                                 ]




>consensus_2354#1
TTTCTCTCCGCTTCCATAACCCTCCAGTGGGGCGACCGTTCCTGGTTTTAAACAAGCTTT
TTTCCCCCCTTCGCTTCTCTCGAACGCGCAGCGTCGGATTTCCGGACATGCCGAACATCG
TGCTTTTCAGCGGGAGCTCGCACCACGATCTGTCCCAGAAGGTAGCCGATCGGCTGGGGC
TGGAACTGGGGAAGGTGGTCACGAAGAAGTTCAGCAACCAGGAGACATGCGTGGAAATCG
GGGAAAGCGTACGTGGGGAGGATGTATACATCGTGCAGAGCGGCTGTGGTGAAATTAACG
ACAACTTGATGGAGTTGCTGATCATGATTAACGCCTGTAAGATCGCCTCCTCGTCCCGCG
TCACCGCCGTCATCCCCTGCTTCCCATACGCCCGGCAGGACAAAAAAGACAAGCAGCTCA
TCCGGCAATTCCAGGTAGTTGAGTGTTTGGTCAACAAACCCCGGAGCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2354#0      TCCTTATTGAGGAGTCGGTAACTCTGCTGACACATTTCCTATTGCCGCCGCACCAGTGCA 60
consensus_2354#1      ------------------------------------------------------------
                                                                                  

consensus_2354#0      ATGCCCAGCCTGCAACATTAGCCAGCGACTTTCTCTCCGCTTCCATAACCCTCCAGTGGG 120
consensus_2354#1      -----------------------------TTTCTCTCCGCTTCCATAACCCTCCAGTGGG 31
                                                   *******************************

consensus_2354#0      GCGACCGTTCCTGGTTTTAAACAAGCTTTTTTCCCCCCTTCGCTTCTCTCGAACGCGCAG 180
consensus_2354#1      GCGACCGTTCCTGGTTTTAAACAAGCTTTTTTCCCCCCTTCGCTTCTCTCGAACGCGCAG 91
                      ************************************************************

consensus_2354#0      CGTCGGATTTCCGGACATGCCGAACATCGTGCTTTTCAGCGGGAGCTCGCACCACGATCT 240
consensus_2354#1      CGTCGGATTTCCGGACATGCCGAACATCGTGCTTTTCAGCGGGAGCTCGCACCACGATCT 151
                      ************************************************************

consensus_2354#0      GTCCCAGAAGGTAGCCGATCGGCTGGGGCTGGAACTGGGGAAGGTGGTCACGAAGAAGTT 300
consensus_2354#1      GTCCCAGAAGGTAGCCGATCGGCTGGGGCTGGAACTGGGGAAGGTGGTCACGAAGAAGTT 211
                      ************************************************************

consensus_2354#0      CAGCAACCAGGAGACATGCGTGGAAATCGGGGAAAGCGTACGTGGGGAGGATGTATACAT 360
consensus_2354#1      CAGCAACCAGGAGACATGCGTGGAAATCGGGGAAAGCGTACGTGGGGAGGATGTATACAT 271
                      ************************************************************

consensus_2354#0      CGTGCAGAGCGGCTGTGGTGAAATTAACGACAACTTGATGGAGTTGCTGATCATGATTAA 420
consensus_2354#1      CGTGCAGAGCGGCTGTGGTGAAATTAACGACAACTTGATGGAGTTGCTGATCATGATTAA 331
                      ************************************************************

consensus_2354#0      CGCCTGTAAGATCGCCTCCTCGTCCCGCGTCACCGCCGTCATCCCCTGCTTCCCATACGC 480
consensus_2354#1      CGCCTGTAAGATCGCCTCCTCGTCCCGCGTCACCGCCGTCATCCCCTGCTTCCCATACGC 391
                      ************************************************************

consensus_2354#0      CCGGCAGGACAAAAAAGACAAGAG--TCGAGCACCAATATCAGCCAAGCTGGTGGCCAAC 538
consensus_2354#1      CCGGCAGGACAAAAAAGACAAGCAGCTCATCCGGCAATTCCAGGTAGTTGAGTGTTTGGT 451
                      **********************    **   *  ****  ***  *     ***      

consensus_2354#0      ATGCTGTCTGTGGCCGGCGCTGACCACATTATCACCATGGACCTTCACGCCTCACAGATC 598
consensus_2354#1      CAACAAACCCCGG--AGCCCC--------------------------------------- 470
                         *   *   **   ** *                                        

consensus_2354#0      CAGGGATTTTTTGACATTGCTGTAGACAATCTTTACGCTGGNCCTGCTGTTCTTAAGTGG 658
consensus_2354#1      ------------------------------------------------------------
                                                                                  

consensus_2354#0      ATTAAAGAAAACATCCCGGAGTGGAAAAACTGCATAATCGTTTCC 703
consensus_2354#1      ---------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)