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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 709 fasta sequence
[TTATCAGTGTGAGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTCGTTAGACGATAAGGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGTGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGTAGGTGTCTCGGGAAACTGTCTGAAGTAGCTTTGCAGAGACCTAAATGTCTTCCTCTGAGTGGAGGAAGGTGCCGTGCTCCGGCTGCACCCCAAAACATCCAGTCAAGCAAGAATGGAATGAGAACAATTGGAGCTTGTTTAACAAGGCGCTCCACTGGGAGCGTGCAGGATGTACTGAGCCATACTCTCTCCCTTCCAACAGGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGTGAGCTGTGCCTCTCAAGCACTTATGCCAAATGCTTTTCCTGCAAATCAGGTCTTGCTCTGACCTGCCGTCACACACCCACACACACATACCTCGCGCTTCCCTTCTGG]
[+] EMBL CA846040 [TTATCAGTGTGAGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTCGTTAGACGATAAGGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGTGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGTAGGTGTCTC GGTAACTGTCTGAAGTAGCTTTGCAGAGACCTAAATGTCTTCCTCTGAGTGGAGGAAGGTGCCGTGCTCCGGCTGCACCCCAAAACATCCAGTCAAGCAAGAATGGAATGAGAACAATTGGAGCTTGTTTAACAAGGCGCTCCACTGGGAGCGTGCAGGATGTACTGAGCCATACTCTCTCCCTTCCAACAGGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGTGAGCTGTGCCTCTCAAGCACTTATGCCAAATGCTTTTCCTGCAAATCAGGTCTTGCTCTGACCTGCCGTCACACACCCACACACACATACCTCGCGCTTCCCTTCTGG]
[+] EMBL FR0059082 [ CAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGTGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGTAGGTGTCTCGGGAAACTGTCTGAAGTAG ]
consensusID : consensus_2356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 628 fasta sequence
[TAAGTGTGTGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTGGACAGACGATAAGGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGCGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGATTCATCTTCTGAAGATAAAAAGGACAAGAAAAAGAAGAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGGATTCATCTTCTTCATGTGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGATGAAAAAAAGAAGAAAAAGGACAAGAAAAAGAAGAAAACAAAGAAGAAGAAGAAGGATTCATCTTCTTCATGCGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGA]
[+] EMBL CA589551 [TAAGTGTGTGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTGGACAGACGATAAGGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGCGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGATTCATCTTCTGAAGATAAAAAGGACAAGAAAAAGAAGAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGGATTCATCTTCTTCATGTGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGATGAAAAAAAGAAGAAAAAGGACAAGAAAAAGAAGAAAACAAAGAAGAAGAAGAAGGATTCATCTTCTTCATGCGATAGTTCCTCTGATAGTTCCTCTTCT ]
[+] EMBL BU805858 [ AGTTGGCGTCAGTGGGGCCCAAGAAGCAGTGGACAGACGATAAGGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTACAGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAGAAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGCAGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGCGAGGATGAGGGGATTTGTGACAAAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGATTCATCTTCTGAAGATAAAAAGGACAAGAAAAAGAAGAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGGATTCATCTTCTTCATGTGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGATGAAAAAAAGAAGAAAAAGGACAAGAAAAAGAAGAAAACAAAGAAGAAGAAGAAGGATTCATCTTCTTCATGCGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAGA]
[+] EMBL CA847072 [ AGATGAAAAAAAGAAGAAAAAGGACAAGAAAAAGACCTAAACAAAGAAGAAGAAGAAGGATTCATCTTCTTCATGCGATAGTTCCTCTGATAGTTCCTCTTCTGACAGTGAAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2356#0 TTATCAGTGTGAGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTCGTTAGACGATAA 60
consensus_2356#1 ---TAAGTGTGTGGAAAAGTTGGCGTCAGTGGGGCCCAAGAAGCAGTGGACAGACGATAA 57
* ****** *********************************** * *********
consensus_2356#0 GGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTAC 120
consensus_2356#1 GGTTGGACCAAATGACATCCATCCTCAAAGCTCCTGATGGAGCAGGGGCTGTAGCTGTAC 117
************************************************************
consensus_2356#0 AGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAG 180
consensus_2356#1 AGCAGCCGGTGACAGATCCACCTGGTACCTTACAGCCTCCTGCTGAGGGACAGGAACTAG 177
************************************************************
consensus_2356#0 AAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGC 240
consensus_2356#1 AAGACCCAGTCAAAATGGAGGGAGAAAAGAGTCCTCGGGGGTGTGCCACGGAAAACAAGC 237
************************************************************
consensus_2356#0 AGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGTGAGGATGAGGGGATTTGTGACA 300
consensus_2356#1 AGCTGTGGTCTATGGACAGCTCTGAGTCCTCAGACAGCGAGGATGAGGGGATTTGTGACA 297
************************************* **********************
consensus_2356#0 AAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAGTAGGTGTCTCGGGAAACT 360
consensus_2356#1 AAGAGAAGAAGAAGACATTGAAGAAGAAAAAGAAAAAGAAAG------ACTCAGGTTCCT 351
****************************************** *** ** **
consensus_2356#0 GTCTGAAGTAGCTTTGCAGAGACCTAAATGTCTTCCTCTGAGTGGAGGAAGGTGCCGTGC 420
consensus_2356#1 C----------CTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGGATTCATCT 401
** * ** *** *** *** ** *** * *
consensus_2356#0 TCCGGCTGCACCCCAAAACATCCAGTCAAGCAAGAATGGAATGAGAACAATTGGAGCTTG 480
consensus_2356#1 TCTGAAGATA----AAAA-----GGACAAGAAAAAGAAGAAAAAAAAGAAGAAGAAGAAG 452
** * * **** * **** ** * *** * ** ** ** *
consensus_2356#0 TTTAACAAGGCGCTCCACTGGGAGCGTGCAGGATGTACTGAGCCATACTCTCTCCCTTCC 540
consensus_2356#1 AAGAAGAAGGATTCATCTTCTTCATGTGATAGTTCCTCTGA----TAGTTCCTC--TTCT 506
** **** * *** * * **** ** * *** ***
consensus_2356#0 AACAGGACTCAGGTTCCTCCTCTTCATCCTCCTCGCCGTCCTCCGACAGTGACAGTGAGG 600
consensus_2356#1 GACAG---TGAAGATGAAAAAAAGAAGAAAAAGGACAAGAAAAAGAAGAAAACAAAGAAG 563
**** * * * * * * ** *** ** *
consensus_2356#0 TGAGCTGTGCCTCTCAAGCACTTATGCCAAATGCTTTTCCTGCAAATCAGGTCTTGCTCT 660
consensus_2356#1 AAGAAGAAGGATTCATCTTCTTCATGC--GATAGTTCCTCTGATAGT----TCCTCTTCT 617
* * * **** ** ** *** * * ** * ***
consensus_2356#0 GACCTGCCGTCACACACCCACACACACATACCTCGCGCTTCCCTTCTGG 709
consensus_2356#1 GACA-GTGAAGA------------------------------------- 628
*** * *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |