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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 682 fasta sequence
[TTATATCCTAACAATGCATGTCAACGAAATGCTCGCGCCAAGGAAGAGTTTGTATCGCTGGAAAGCTAAAGCTTCATTTGCACGTCTTTAACTCCATGTCCTGCTCCGACGAAGCCGTTACCGGACACGTTATTTTTTTTGCGATTTGGACACACCGATGATATTTGTCCACTGCAATTGAGAGCGCGTGTCAGCTTGCTAGCCATAGCAAGCTAATCGCAGCGACATTGTTGGAAATTAGTTGGAGGAAACGTCGCTTGGTTCGTATTCAGGGTTACGACAATCAGAGGCAACATACAAGTGCCTCCTCTGTACAGTTTTCCTTTCCCAGAGTGTGACTCGTTTGCACGACGTCACCAATGCGACCATGGGAAATAGCAGTAAATAGGCTGCCACCAACAGCCCCCTTAAATCCAAGGAGGTTCCTTGGAGAGCCCTGCAACGCTCCAGTGCATCTCAGGAGAAGCCCACCAGAGCGACACCATTGGGGGAGACGAGACAGACCCGTACTGTTCAGTTCCCTGGTCCAGGATGAGAACTTCCATCATCTGATTTTCTCCCAACACCACCCACAGGTTCCTTTAGATGAGTCCAGACAGTACAACCACACCAGCACACCACCACGCATGCTTCACCCCGCTGCTCCCCCGCCCCACCAGAGCCCCATCATGGTGGATCTACA]
[+] EMBL CA332884 [TTATATCCTAACAATGCATGTCAACGAAATGCTCGCGCCAAGGAAGAGTTTGTATCGCTGGAAAGCTAAAGCTTCATTTGCACGTCTTTAACTCCATGTCCTGCTCCGACGAAGCCGTTACCGGACACGTTATTTTTTTTGCGATTTGGACACACCGATGATATTTGTCCACTGCAATTGAGAGCGCGTGTCAGCTTGCTAGCCATAGCAAGCTAATCGCAGCGACATTGTTGGATTTTTTTTGGAGGAAACGTCGCTTGGTT ]
[+] EMBL CA590647 [ GAGTTTGTATCGCTGGAAAGCTAAAGCTTCATTTGCACGTCTTTAACTCCATGTCCTGCTCCGACGAAGCCGTTACCGGACACGTTATTTTTTTTGCGATTTGGACACACCGATGATATTTGTCCACTGCAATTGAGAGCGCGTGTCAGCTTGCTAGCCATAGCAAGCTAATCGCAGCGACATTGTTGGAAATTAGTTGGAGGAAACGTCGCTTGGTTCGTATTCAGGGTTACGACAATCAGAGGCAACATACAAGTGCCTCCTCTGTACAGTTTTCCTTTCCCAGAGTGTGACTCGTTTGCACGACGTCACCAATGCGACCATGGGAAATAGCAGTAAATAGGCTGCCACCAACAGCCCCCTTAAATCCAAGGAGGTTCCTTGGAGAGCCCTGCAACGCTCCAGTGCATCTCANGAGAAGCCCACCAGAGCGACACCATTGGGGGAGACGAGACAGACCCGTACTGTTCAGTTCCCTGGTCCAGGATGAGAACTTCCATCATCTGATTTTCTCCC ACACCACCCCCCGGTTCCCTTAAATGGGTCCCGACAGTAC ACCACCGCAGGGC CCGCCACGCGTG ]
[+] EMBL CA590210 [ AAGCTTCATTTGCACGTCTTTAACTCCATGTCCTGCTCCGACGAAGCCGTTACCGGACACGTTATTTTTTTTGCGATTTGGACACACCGATGATATTTGTCCACTGCAATTGAGAGCGCGTGTCAGCTTGCTAGCCATAGCAAGCTAATCGCAGCGACATTGTTGGAAATTAGTTGGAGGAAACGTCGCTTGGTTCGTATTCAGGGTTACGACAATCAGAGGCAACATACAAGTGCCTCCTCTGTACAGTTTTCCTTTCCCAGAGTGTGACTCGTTTGCACGACGTCACCAATGCGACCATGGGAAATAGCAGTAAATAGGCTGCCACCAACAGCCCCCTTAAATCCAAGGAGGTTCCTTGGAGAGCCCTGCAACGCTCCAGTGCATCTCAGGAGAAGCCCACCAGAGCGACACCATTGGGGGAGACGAGACAGACCCGTACTGTTCAGTTCCCTGGTCCAGGATGAGAACTTCCATCATCTGATTTTCTCCCAACACCACCCACAGGTTCCTTTAGATGAGTCCAGACAGTACAACCACACCAGCACACCACCACGCATGCTTCACCCCGCTGCTCCCCCG ]
[+] EMBL FR0060175 [ CTTGGAGAGCCCTGCAACGCTCCAGTGCATCTCAGGAGAAGCCCACCAGAGCGACACCATTGGGGGAGACGAGACAGACCCGTACTGTTCAGTTCCCTGGTCCAGGATGAGAACTTCCATCATCTGATTTTCTCCCAACACCACCCACAGGTTCCTTTAGATGAGTCCAGACAGTACAACCACACCAGCACACCACCACGCATGCTTCACCCCGCTGCTCCCCTGCCCCACCAGAGCCCCATCATGGTGGATCTACA]
consensusID : consensus_2360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence
[GTAATTTCATGTCTGACAACTAATCTTCGACAAAGGGTGAAAATTTGAAGTGCTAGCAGGCGACAAAGCCGCGAAACACCCGGGTGGTTCGGCCCAGTCGACCGAAGCGTTGACGCTGAGCACCTTTTTTACGGCAGTGGTGAGACCCACGGAATGTTCCACACGGGAACAGCTGACCAGGATGCCGCACTTAACCTGACGAGATGTGAACATTGCAAGGCAAATAACAGCGATCAGATGCTCGCATATTAACAATCAGGGTTACGACAATCAGAGGCAACATACAAGTGCCTCCTCTGTACAGTTTTCCTTTCCCAGAGTGTGACTCGGTTGCACGACGTCACCAATGCGAC]
[+] EMBL FR0060404 [GTAATTTCATGTCTGACAACTAATCTTCGACAAAGGGTGAAAATTTGAAGTGCTAGCAGGCGACAAAGCCGCGAAACACCCGGGTGGTTCGGCCCAGTCGACCGAAGCGTTGACGCTGAGCACCTTTTTTACGGCAGTGGTGAGACCCACGGAATGTTCCACACGGGAACAGCTGACCAGGATGCCGCACTTAACCTGACGAGATGTGAACATTGCAAGGCAAATAACAGCGATCAGATGCTCGCATATTAACAATCAGGGTTACGACAATCAGAGGCAACATACAAGTGCCTCCTCTGTACAGTTTTCCTTTCCCAGAGTGTGACTCGGTTGCACGACGTCACCAATGCGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2360#0 TTATATCCTAACAATGCATGTCAACGAAATGCTCGCGCCAAGGAAGAGTTTGTATCGCTG 60
consensus_2360#1 --GTAATTTCA---TGTCTGACAACTAATCTTCGACAAAGGGTGAAAATTTGAAGTGCTA 55
** * * ** ** **** ** * * * * **** * ***
consensus_2360#0 GAAAGCTAAAGCTTCATTTGCACGTCTTTAACTCCATGTCCTGCTCCGACGAAGCCGTTA 120
consensus_2360#1 GCAGGCGACAAAGCCGC--GAAACACCCGGGTGGTTCGGCCCAGTCGACCGAAGC-GTTG 112
* * ** * * * * * * * ** ** ****** ***
consensus_2360#0 CCGGACACGTTATTTTTTTTGCGATT-TGGACACACCGATGATATTTGTCCACTGCAATT 179
consensus_2360#1 ACG--CTGAGCACCTTTTTTACGGCAGTGGTGAGACCCACGGAATGT-TCCAC----ACG 165
** * * ****** ** *** * *** * * ** * ***** *
consensus_2360#0 GAGAGCGCGTGTCAGCTTGCTAGCCATAGCAAGCTAATCGCAGCGACATTGTTGG--AAA 237
consensus_2360#1 GGAACAGCTGACCAGGATGCCGCACTTAACCTGACGAG-ATGTGAACATTGCAAGGCAAA 224
* * ** *** *** * ** * * * ****** * ***
consensus_2360#0 TTAGTTGGAGGAAACGTCGCTTGGTTCGTATTCAGGGTTACGACAATCAGAGGCAACATA 297
consensus_2360#1 TAACAGCGATCAGATGCTCGCATATTAACAATCAGGGTTACGACAATCAGAGGCAACATA 284
* * ** * * * ** * *****************************
consensus_2360#0 CAAGTGCCTCCTCTGTACAGTTTTCCTTTCCCAGAGTGTGACTCGTTTGCACGACGTCAC 357
consensus_2360#1 CAAGTGCCTCCTCTGTACAGTTTTCCTTTCCCAGAGTGTGACTCGGTTGCACGACGTCAC 344
********************************************* **************
consensus_2360#0 CAATGCGACCATGGGAAATAGCAGTAAATAGGCTGCCACCAACAGCCCCCTTAAATCCAA 417
consensus_2360#1 CAATGCGAC--------------------------------------------------- 353
*********
consensus_2360#0 GGAGGTTCCTTGGAGAGCCCTGCAACGCTCCAGTGCATCTCAGGAGAAGCCCACCAGAGC 477
consensus_2360#1 ------------------------------------------------------------
consensus_2360#0 GACACCATTGGGGGAGACGAGACAGACCCGTACTGTTCAGTTCCCTGGTCCAGGATGAGA 537
consensus_2360#1 ------------------------------------------------------------
consensus_2360#0 ACTTCCATCATCTGATTTTCTCCCAACACCACCCACAGGTTCCTTTAGATGAGTCCAGAC 597
consensus_2360#1 ------------------------------------------------------------
consensus_2360#0 AGTACAACCACACCAGCACACCACCACGCATGCTTCACCCCGCTGCTCCCCCGCCCCACC 657
consensus_2360#1 ------------------------------------------------------------
consensus_2360#0 AGAGCCCCATCATGGTGGATCTACA 682
consensus_2360#1 -------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |