These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2370#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 665 fasta sequence [CCGTTCGGTGACTGGCGGTACTTGCAAAGAGCTCGCTGCCCAGAAGGACGTGGACGGTTTCCTCGTGGGTGGAGCCTCCCTTAAGCCAGAGTTTATTGACATTATCAACGCCAAGGCATAAAAACTGACCGCTAGCTACGAGTGAGACCACATTCAGAGCATTCAGTTTCAGTCGATCACTTAGTGTTCTTCCCTTTTTGTTCAAAGTACTTGTGCAATGATGTCATTTCCCTGTTCTCCTCTTTTCCCCCCCCCATTGGGATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATAAC-AGAATGGTGGGTCTTTGTAGTAACAATGGTGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTGACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAATTGGCCTGAAGGGCAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAGGGGAGGAGAGAGAACTCCAAGGGGGGGCCCGGGAC] [+] EMBL FR0055322 [CCGTTCGGTGACTGTCGATACTTGCAAAGAGCTCGCTGCCCAGAAGGACGTGGACGGTTTCCTCGTGGGTGGAGCCTCCCTTAAGCCAGAGTTTATTGACATTATCAACGCCAAGGCATAAAAACTGACCGCTAGCTACGAGTGAGACCACATTCAGAGCATTCAGTTTCAGTCGATCACTTAGTGTTCTTCCCTTTTTGTTCACAGTACTTGTGCACTGATGTCATTTCCCTGTTCTCCTCTTTTTTCCCCCCCATTGGGATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACACACAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATCACTAGAATTTTGGGTCTTTTTAATAACACTGGTG ] [-] EMBL CA332186 [ GTGACTGGTGGTA TTGCAAAGAGCTCGTTGCCCAGAAGGACGTGGACGGTTTCTTCGTGGGTGGAGCCTCCCTTAAGCCAGAGTTTATTGCCATTATCAACGCCAAGGCATAAAAACTGCCCGCTAGCTACGAGTGAGACCACATTCAGAGCATTCAGTTTCAGTCCATCACTTAGTGTTCTTCCCTTTTTGTTCAAAGTACTTGTGCAATGATGTCATTTCCCTGTTCTCCTCTTTTCCCCCCCCCATTGGCATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATAAC ACTGGTGTCTCTTTGT GTAACTATGATGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTGACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAATTGGCCTGAAGGGCAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATA ] [+] EMBL FR0056661 [ AATTGGCCTGAAGGACAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAGGGGAGGAGAGAGAACTCCAAGGGGGGGCCCGGGAC] consensusID : consensus_2370#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 478 fasta sequence [TGTCATTTCCCTGTTCTCCTCTTTTTTCCCCCCCATTGGCATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATCAAAAGAATTTTGTTTCTTTTTAATAACACTGGTGTCTCTTTGTGTAACTATGATGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTGACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAGTTGGCCTGAAGGACAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAAAAAAAAAAAAAAAAACTCAAGGGGGGGCCCGGTACCCAGCTTTTGTC] [+] EMBL BU805139 [TGTCATTTCCCTGTTCTCCTCTTTTTTCCCCCCCATTGGCATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATCAAAAGAATTTTGTTTCTTTTTAATAACACTGGTGTCTCTTTGTGTAACTATGATGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTGACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAGTTGGCCTGAAGGACAAAGGGTGGGAATGCTGTAAGAAGACGATATAATA ] [+] EMBL FR0056686 [ GTTGATCAATTGGCCTGAAGGACAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAAAAAAAAAAAAAAAAACTCAAGGGGGGGCCCGGTACCCAGCTTTTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2370#0 CCGTTCGGTGACTGGCGGTACTTGCAAAGAGCTCGCTGCCCAGAAGGACGTGGACGGTTT 60 consensus_2370#1 ------------------------------------------------------------ consensus_2370#0 CCTCGTGGGTGGAGCCTCCCTTAAGCCAGAGTTTATTGACATTATCAACGCCAAGGCATA 120 consensus_2370#1 ------------------------------------------------------------ consensus_2370#0 AAAACTGACCGCTAGCTACGAGTGAGACCACATTCAGAGCATTCAGTTTCAGTCGATCAC 180 consensus_2370#1 ------------------------------------------------------------ consensus_2370#0 TTAGTGTTCTTCCCTTTTTGTTCAAAGTACTTGTGCAATGATGTCATTTCCCTGTTCTCC 240 consensus_2370#1 -----------------------------------------TGTCATTTCCCTGTTCTCC 19 ******************* consensus_2370#0 TCTTTTCCCCCCCCCATTGGGATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTC 300 consensus_2370#1 TCTTTTTTCCCCCCCATTGGCATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTC 79 ****** ************ *************************************** consensus_2370#0 ACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCA 360 consensus_2370#1 ACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCA 139 ************************************************************ consensus_2370#0 ATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACG 420 consensus_2370#1 ATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACG 199 ************************************************************ consensus_2370#0 GTGTCACAGCTCCTGTCAAT-AACAGAATGGTGGGTCTTTGTAGTAACA----------- 468 consensus_2370#1 GTGTCACAGCTCCTGTCAATCAAAAGAATTTTGTTTCTTTTTAATAACACTGGTGTCTCT 259 ******************** ** ***** ** ***** ** ***** consensus_2370#0 ----------ATGGTGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTG 518 consensus_2370#1 TTGTGTAACTATGATGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTG 319 *** ********************************************** consensus_2370#0 ACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAATTGGCCTGAAGGGCA 578 consensus_2370#1 ACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAGTTGGCCTGAAGGACA 379 ******************************************** ************ ** consensus_2370#0 AAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAGGGGAGGAG 638 consensus_2370#1 AAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAAAAAAAAAA 439 *************************************************** * * consensus_2370#0 AGAGAACTCCAAGGGGGGGCCCGGGAC------------ 665 consensus_2370#1 AAAAAAACTCAAGGGGGGGCCCGGTACCCAGCTTTTGTC 478 * * ** *************** ** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |