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Takifugu rubripes
cluster # 2370 cluster # 2370       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2370#0 length = 665 sequences # 3  
consensus_2370#1 length = 478 sequences # 2  

consensusID : consensus_2370#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 665
fasta sequence
                              [CCGTTCGGTGACTGGCGGTACTTGCAAAGAGCTCGCTGCCCAGAAGGACGTGGACGGTTTCCTCGTGGGTGGAGCCTCCCTTAAGCCAGAGTTTATTGACATTATCAACGCCAAGGCATAAAAACTGACCGCTAGCTACGAGTGAGACCACATTCAGAGCATTCAGTTTCAGTCGATCACTTAGTGTTCTTCCCTTTTTGTTCAAAGTACTTGTGCAATGATGTCATTTCCCTGTTCTCCTCTTTTCCCCCCCCCATTGGGATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATAAC-AGAATGGTGGGTCTTTGTAGTAACAATGGTGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTGACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAATTGGCCTGAAGGGCAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAGGGGAGGAGAGAGAACTCCAAGGGGGGGCCCGGGAC]

[+] EMBL FR0055322            [CCGTTCGGTGACTGTCGATACTTGCAAAGAGCTCGCTGCCCAGAAGGACGTGGACGGTTTCCTCGTGGGTGGAGCCTCCCTTAAGCCAGAGTTTATTGACATTATCAACGCCAAGGCATAAAAACTGACCGCTAGCTACGAGTGAGACCACATTCAGAGCATTCAGTTTCAGTCGATCACTTAGTGTTCTTCCCTTTTTGTTCACAGTACTTGTGCACTGATGTCATTTCCCTGTTCTCCTCTTTTTTCCCCCCCATTGGGATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACACACAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATCACTAGAATTTTGGGTCTTTTTAATAACACTGGTG                                                                                                                                                                                               ]
[-] EMBL CA332186             [       GTGACTGGTGGTA TTGCAAAGAGCTCGTTGCCCAGAAGGACGTGGACGGTTTCTTCGTGGGTGGAGCCTCCCTTAAGCCAGAGTTTATTGCCATTATCAACGCCAAGGCATAAAAACTGCCCGCTAGCTACGAGTGAGACCACATTCAGAGCATTCAGTTTCAGTCCATCACTTAGTGTTCTTCCCTTTTTGTTCAAAGTACTTGTGCAATGATGTCATTTCCCTGTTCTCCTCTTTTCCCCCCCCCATTGGCATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATAAC   ACTGGTGTCTCTTTGT GTAACTATGATGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTGACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAATTGGCCTGAAGGGCAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATA                                            ]
[+] EMBL FR0056661            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AATTGGCCTGAAGGACAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAGGGGAGGAGAGAGAACTCCAAGGGGGGGCCCGGGAC]


>consensus_2370#0 CCGTTCGGTGACTGGCGGTACTTGCAAAGAGCTCGCTGCCCAGAAGGACGTGGACGGTTT CCTCGTGGGTGGAGCCTCCCTTAAGCCAGAGTTTATTGACATTATCAACGCCAAGGCATA AAAACTGACCGCTAGCTACGAGTGAGACCACATTCAGAGCATTCAGTTTCAGTCGATCAC TTAGTGTTCTTCCCTTTTTGTTCAAAGTACTTGTGCAATGATGTCATTTCCCTGTTCTCC TCTTTTCCCCCCCCCATTGGGATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTC ACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCA ATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACG GTGTCACAGCTCCTGTCAATAACAGAATGGTGGGTCTTTGTAGTAACAATGGTGTTCAGT GGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTGACCGGCTGTCTTGCCAAGCGAG ATGTGTCATTTCATGTTGATCAATTGGCCTGAAGGGCAAAGGGTGGGAATGCTGTAAGAA GACGATATAATAAATGTTATAGAGACTAAGGGGAGGAGAGAGAACTCCAAGGGGGGGCCC GGGAC



consensusID : consensus_2370#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 478
fasta sequence
                              [TGTCATTTCCCTGTTCTCCTCTTTTTTCCCCCCCATTGGCATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATCAAAAGAATTTTGTTTCTTTTTAATAACACTGGTGTCTCTTTGTGTAACTATGATGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTGACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAGTTGGCCTGAAGGACAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAAAAAAAAAAAAAAAAACTCAAGGGGGGGCCCGGTACCCAGCTTTTGTC]

[+] EMBL BU805139             [TGTCATTTCCCTGTTCTCCTCTTTTTTCCCCCCCATTGGCATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATCAAAAGAATTTTGTTTCTTTTTAATAACACTGGTGTCTCTTTGTGTAACTATGATGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTGACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAGTTGGCCTGAAGGACAAAGGGTGGGAATGCTGTAAGAAGACGATATAATA                                                                 ]
[+] EMBL FR0056686            [                                                                                                                                                                                                                                                                                                                                                                   GTTGATCAATTGGCCTGAAGGACAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAAAAAAAAAAAAAAAAACTCAAGGGGGGGCCCGGTACCCAGCTTTTGTC]


>consensus_2370#1 TGTCATTTCCCTGTTCTCCTCTTTTTTCCCCCCCATTGGCATATTTAGTCATCTTGCAAA GGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAA CTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTT ACAAAAAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATCAAAAGAATTTTGTTTCTTTT TAATAACACTGGTGTCTCTTTGTGTAACTATGATGTTCAGTGGCTTTTAACTCCATGTAG ATGTGCTCGACCAGCTCTGACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGA TCAGTTGGCCTGAAGGACAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTA TAGAGACTAAAAAAAAAAAAAAAAAACTCAAGGGGGGGCCCGGTACCCAGCTTTTGTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2370#0      CCGTTCGGTGACTGGCGGTACTTGCAAAGAGCTCGCTGCCCAGAAGGACGTGGACGGTTT 60
consensus_2370#1      ------------------------------------------------------------
                                                                                  

consensus_2370#0      CCTCGTGGGTGGAGCCTCCCTTAAGCCAGAGTTTATTGACATTATCAACGCCAAGGCATA 120
consensus_2370#1      ------------------------------------------------------------
                                                                                  

consensus_2370#0      AAAACTGACCGCTAGCTACGAGTGAGACCACATTCAGAGCATTCAGTTTCAGTCGATCAC 180
consensus_2370#1      ------------------------------------------------------------
                                                                                  

consensus_2370#0      TTAGTGTTCTTCCCTTTTTGTTCAAAGTACTTGTGCAATGATGTCATTTCCCTGTTCTCC 240
consensus_2370#1      -----------------------------------------TGTCATTTCCCTGTTCTCC 19
                                                               *******************

consensus_2370#0      TCTTTTCCCCCCCCCATTGGGATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTC 300
consensus_2370#1      TCTTTTTTCCCCCCCATTGGCATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTC 79
                      ******  ************ ***************************************

consensus_2370#0      ACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCA 360
consensus_2370#1      ACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCA 139
                      ************************************************************

consensus_2370#0      ATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACG 420
consensus_2370#1      ATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACG 199
                      ************************************************************

consensus_2370#0      GTGTCACAGCTCCTGTCAAT-AACAGAATGGTGGGTCTTTGTAGTAACA----------- 468
consensus_2370#1      GTGTCACAGCTCCTGTCAATCAAAAGAATTTTGTTTCTTTTTAATAACACTGGTGTCTCT 259
                      ******************** ** *****  **  ***** ** *****           

consensus_2370#0      ----------ATGGTGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTG 518
consensus_2370#1      TTGTGTAACTATGATGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTG 319
                                *** **********************************************

consensus_2370#0      ACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAATTGGCCTGAAGGGCA 578
consensus_2370#1      ACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAGTTGGCCTGAAGGACA 379
                      ******************************************** ************ **

consensus_2370#0      AAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAGGGGAGGAG 638
consensus_2370#1      AAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAAAAAAAAAA 439
                      ***************************************************    *  * 

consensus_2370#0      AGAGAACTCCAAGGGGGGGCCCGGGAC------------ 665
consensus_2370#1      AAAAAAACTCAAGGGGGGGCCCGGTACCCAGCTTTTGTC 478
                      * * **   *************** **            




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)