|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2370#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 665 fasta sequence
[CCGTTCGGTGACTGGCGGTACTTGCAAAGAGCTCGCTGCCCAGAAGGACGTGGACGGTTTCCTCGTGGGTGGAGCCTCCCTTAAGCCAGAGTTTATTGACATTATCAACGCCAAGGCATAAAAACTGACCGCTAGCTACGAGTGAGACCACATTCAGAGCATTCAGTTTCAGTCGATCACTTAGTGTTCTTCCCTTTTTGTTCAAAGTACTTGTGCAATGATGTCATTTCCCTGTTCTCCTCTTTTCCCCCCCCCATTGGGATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATAAC-AGAATGGTGGGTCTTTGTAGTAACAATGGTGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTGACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAATTGGCCTGAAGGGCAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAGGGGAGGAGAGAGAACTCCAAGGGGGGGCCCGGGAC]
[+] EMBL FR0055322 [CCGTTCGGTGACTGTCGATACTTGCAAAGAGCTCGCTGCCCAGAAGGACGTGGACGGTTTCCTCGTGGGTGGAGCCTCCCTTAAGCCAGAGTTTATTGACATTATCAACGCCAAGGCATAAAAACTGACCGCTAGCTACGAGTGAGACCACATTCAGAGCATTCAGTTTCAGTCGATCACTTAGTGTTCTTCCCTTTTTGTTCACAGTACTTGTGCACTGATGTCATTTCCCTGTTCTCCTCTTTTTTCCCCCCCATTGGGATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACACACAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATCACTAGAATTTTGGGTCTTTTTAATAACACTGGTG ]
[-] EMBL CA332186 [ GTGACTGGTGGTA TTGCAAAGAGCTCGTTGCCCAGAAGGACGTGGACGGTTTCTTCGTGGGTGGAGCCTCCCTTAAGCCAGAGTTTATTGCCATTATCAACGCCAAGGCATAAAAACTGCCCGCTAGCTACGAGTGAGACCACATTCAGAGCATTCAGTTTCAGTCCATCACTTAGTGTTCTTCCCTTTTTGTTCAAAGTACTTGTGCAATGATGTCATTTCCCTGTTCTCCTCTTTTCCCCCCCCCATTGGCATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATAAC ACTGGTGTCTCTTTGT GTAACTATGATGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTGACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAATTGGCCTGAAGGGCAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATA ]
[+] EMBL FR0056661 [ AATTGGCCTGAAGGACAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAGGGGAGGAGAGAGAACTCCAAGGGGGGGCCCGGGAC]
consensusID : consensus_2370#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 478 fasta sequence
[TGTCATTTCCCTGTTCTCCTCTTTTTTCCCCCCCATTGGCATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATCAAAAGAATTTTGTTTCTTTTTAATAACACTGGTGTCTCTTTGTGTAACTATGATGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTGACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAGTTGGCCTGAAGGACAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAAAAAAAAAAAAAAAAACTCAAGGGGGGGCCCGGTACCCAGCTTTTGTC]
[+] EMBL BU805139 [TGTCATTTCCCTGTTCTCCTCTTTTTTCCCCCCCATTGGCATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTCACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCAATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACGGTGTCACAGCTCCTGTCAATCAAAAGAATTTTGTTTCTTTTTAATAACACTGGTGTCTCTTTGTGTAACTATGATGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTGACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAGTTGGCCTGAAGGACAAAGGGTGGGAATGCTGTAAGAAGACGATATAATA ]
[+] EMBL FR0056686 [ GTTGATCAATTGGCCTGAAGGACAAAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAAAAAAAAAAAAAAAAACTCAAGGGGGGGCCCGGTACCCAGCTTTTGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2370#0 CCGTTCGGTGACTGGCGGTACTTGCAAAGAGCTCGCTGCCCAGAAGGACGTGGACGGTTT 60
consensus_2370#1 ------------------------------------------------------------
consensus_2370#0 CCTCGTGGGTGGAGCCTCCCTTAAGCCAGAGTTTATTGACATTATCAACGCCAAGGCATA 120
consensus_2370#1 ------------------------------------------------------------
consensus_2370#0 AAAACTGACCGCTAGCTACGAGTGAGACCACATTCAGAGCATTCAGTTTCAGTCGATCAC 180
consensus_2370#1 ------------------------------------------------------------
consensus_2370#0 TTAGTGTTCTTCCCTTTTTGTTCAAAGTACTTGTGCAATGATGTCATTTCCCTGTTCTCC 240
consensus_2370#1 -----------------------------------------TGTCATTTCCCTGTTCTCC 19
*******************
consensus_2370#0 TCTTTTCCCCCCCCCATTGGGATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTC 300
consensus_2370#1 TCTTTTTTCCCCCCCATTGGCATATTTAGTCATCTTGCAAAGGGACAAGTTGACACATTC 79
****** ************ ***************************************
consensus_2370#0 ACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCA 360
consensus_2370#1 ACTGTACTGCACTGAGACAAGACAACCCGTGTGTGTACTAACTGCCACACCAAGCGCTCA 139
************************************************************
consensus_2370#0 ATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACG 420
consensus_2370#1 ATCCTTTTGGCCGTCAGTCTGCGCCTTTACTTGAAAAGTTTACAAAAAGCTTTGTGAACG 199
************************************************************
consensus_2370#0 GTGTCACAGCTCCTGTCAAT-AACAGAATGGTGGGTCTTTGTAGTAACA----------- 468
consensus_2370#1 GTGTCACAGCTCCTGTCAATCAAAAGAATTTTGTTTCTTTTTAATAACACTGGTGTCTCT 259
******************** ** ***** ** ***** ** *****
consensus_2370#0 ----------ATGGTGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTG 518
consensus_2370#1 TTGTGTAACTATGATGTTCAGTGGCTTTTAACTCCATGTAGATGTGCTCGACCAGCTCTG 319
*** **********************************************
consensus_2370#0 ACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAATTGGCCTGAAGGGCA 578
consensus_2370#1 ACCGGCTGTCTTGCCAAGCGAGATGTGTCATTTCATGTTGATCAGTTGGCCTGAAGGACA 379
******************************************** ************ **
consensus_2370#0 AAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAGGGGAGGAG 638
consensus_2370#1 AAGGGTGGGAATGCTGTAAGAAGACGATATAATAAATGTTATAGAGACTAAAAAAAAAAA 439
*************************************************** * *
consensus_2370#0 AGAGAACTCCAAGGGGGGGCCCGGGAC------------ 665
consensus_2370#1 AAAAAAACTCAAGGGGGGGCCCGGTACCCAGCTTTTGTC 478
* * ** *************** **
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |