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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 629 fasta sequence
[TGCTAGATAGTTACCGGACAGGCGCAGGAGGGTAAAGGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGGGTGAAGAAACACAAAAACAGGGCAAGACGGCCAAGGTGCCTTTTAACTGGCGGGATGCTTTGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACCGAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGTCCGACCATTAAAGGTTATGGCTGTGCGGGCACTAGTTACGTCGCGTATGGCTTAATTGCCAGAGAGGTAGAGAGAGTGGACAGCGGCTATCGGTCAGTCATGAGTGTCCAGTCGTCGCTGGTCATGCATCCCATCAATGCATACGGCACAGAGGCCCAGAAGGAGAAGTACCTGCCCCGGCTTGCTCGAGGGGAAATCCTGGGCTGCTTTGGCCTGACAGAACCCAACCATGGCAGCGATCCCAGCGGCATGGAGACC]
[+] EMBL FR0063101 [TGCTAGATAGTTACCGGACCAGCGCTCCAGTCTACAGGGTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGGGTGAAGAAACACAAAAACAGGGCAAGACGGCCGAGGTGCCTTTTAACTGGCGGGATGCTTTGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACCGAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGGCCGACC ]
[+] EMBL BU805349 [ ctACAGGTGCAAAACGGTATATGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGGGTGAAGAAACACAAAAACAGGGCAAGACGGCCAAGGTGCCTTTTAACTGGCGGGATGCTTTGGTTTTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACCGAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGTCCGACCATTAAAGGTTATGGCTGTGCGGGCACTAGTTACGTCGCGTATGGCTTAATTGCCAGAGAGGTAGAGAGAGTGGACAGCGGCTATCGGTCAGTCATGAGTGTCCAGTCGTCGCTGGTCATGCATCCCATCAATGCATACGGCACAGAGGCCCAGAAGGAGAAGTACCTGCCCCGGCTTGCTCGAGGGGAAATCCTGGGCTGCTTTGGC ]
[+] EMBL CA846642 [ CAGGTGCAAAACGGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGGGTGAAGAAACACAAAAACAGGGCAAGACGGCCAAGGTGCCTTTTAACTGGCGGGATGCTTTGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACCGAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGTCCGACCATTAAAGGTTATGGCTGTGCGGGCACTAGTTACGTCGCGTATGGCTTAATTGCCAGAGAGGTAGAGAGAGTGGACAGCGGCTATCGGTCAGTCATGAGTGTCCAGTCATCGCTGGTCATGCATCCCATCAATGCATACGGCACAGAGGCCCAGAAGGAGAAGTACCTGCCCCGGCTTGCTCGAGGGGAAATCCTGGGCTGCTTTGGCCTGACAGAACCCAACCATGGCAGCGATCCCAGCGGCATGGAGACC]
consensusID : consensus_2379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence
[CTCCTTTTGGCTACTGCTAGATAGTTACCGGACCAGCGCTCCAGTCTACAGGTGCAAAACGGTATATGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGCCAAGGTGCCTTTTAACTGGCGGGATGCTTTGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACCGAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGTCCGACCATTAAAGGTTATGGCTGTGCGGGCACTAGTTACGTCGCGTATGGCTTAATTGCCAGAGAGGTAGAGAGAGTGGACAGCGGCTATCGGTCAGTCAT]
[+] EMBL CA845885 [CTCCTTTTGGCTACTGCTAGATAGTTACCGGACCAGCGCTCCAGTCTACAGGTGCAAAACGGTATATGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGCCAAGGTGCCTTTTAACTGGCGGGATGCTTTGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACCGAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGTCCGACCATTAAAGGTTATGGCTGTGCGGGCACTAGTTACGTCGCGTATGGCTTAATTGCCAGAGAGGTAGAGAGAGTGGACAGCGGCTATCGGTCAGTCAT]
consensusID : consensus_2379#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence
[TGCTCGGGCTACTGCTAGATAGTTACCGGACCAGCGCTCCATTCTACAGGTGCAAAACGGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGGGTGAAGAAACACAAAAACAGGGCAAGACGGCCAAGGTGCCTTTTAACTGGCGGGATGCTTTGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCC]
[+] EMBL CA846005 [TGCTCGGGCTACTGCTAGATAGTTACCGGACCAGCGCTCCATTCTACAGGTGCAAAACGGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAAGAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGGGTGAAGAAACACAAAAACAGGGCAAGACGGCCAAGGTGCCTTTTAACTGGCGGGATGCTTTGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACTACTGCCAGGAGAAACTCATGCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2379#0 --------------TGCTAGATAGTTACCGGAC----------------AGGCGCAGGAG 30
consensus_2379#1 CTCCTTTTGGCTACTGCTAGATAGTTACCGGACCAGCGCTCCAGTCTACAGGTGCAAAAC 60
consensus_2379#2 --TGCTCGGGCTACTGCTAGATAGTTACCGGACCAGCGCTCCATTCTACAGGTGCAAAAC 58
******************* *** *** *
consensus_2379#0 GGTAAAGGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAA 90
consensus_2379#1 GGTATATGTTTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAA 120
consensus_2379#2 GGT------TTAACATGGCTCTCCGAAGTGCTGTCACCCGTCTGCTCACAACCAGCCAAA 112
*** ***************************************************
consensus_2379#0 GAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGG 150
consensus_2379#1 GAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAG--- 177
consensus_2379#2 GAAGTGTTGCTGTGGCTGCTTCCAGGGCCCAGGGCACAGCTGCAGCAGCTTCCAGAGAGG 172
*********************************************************
consensus_2379#0 GTGAAGAAACACAAAAACAGGGCAAGACGGCCAAGGTGCCTTTTAACTGGCGGGATGCTT 210
consensus_2379#1 ------------------------------CCAAGGTGCCTTTTAACTGGCGGGATGCTT 207
consensus_2379#2 GTGAAGAAACACAAAAACAGGGCAAGACGGCCAAGGTGCCTTTTAACTGGCGGGATGCTT 232
******************************
consensus_2379#0 TGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACT 270
consensus_2379#1 TGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACT 267
consensus_2379#2 TGGATCTGGAGGGTCAGCTGACAGAGGAGGAGATCATGATCCGGGACTCCTTCCGTGACT 292
************************************************************
consensus_2379#0 ACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACC 330
consensus_2379#1 ACTGCCAGGAGAAACTCATGCCCCGGATCCTCATGGCCAACAGGCACGAGCATTTCCACC 327
consensus_2379#2 ACTGCCAGGAGAAACTCATGCCC------------------------------------- 315
***********************
consensus_2379#0 GAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGTCCGACCATTAAAGGTTATG 390
consensus_2379#1 GAGAAATTATCTCAGAAATGGGAGAGTTGGGTGTTTTGGGTCCGACCATTAAAGGTTATG 387
consensus_2379#2 ------------------------------------------------------------
consensus_2379#0 GCTGTGCGGGCACTAGTTACGTCGCGTATGGCTTAATTGCCAGAGAGGTAGAGAGAGTGG 450
consensus_2379#1 GCTGTGCGGGCACTAGTTACGTCGCGTATGGCTTAATTGCCAGAGAGGTAGAGAGAGTGG 447
consensus_2379#2 ------------------------------------------------------------
consensus_2379#0 ACAGCGGCTATCGGTCAGTCATGAGTGTCCAGTCGTCGCTGGTCATGCATCCCATCAATG 510
consensus_2379#1 ACAGCGGCTATCGGTCAGTCAT-------------------------------------- 469
consensus_2379#2 ------------------------------------------------------------
consensus_2379#0 CATACGGCACAGAGGCCCAGAAGGAGAAGTACCTGCCCCGGCTTGCTCGAGGGGAAATCC 570
consensus_2379#1 ------------------------------------------------------------
consensus_2379#2 ------------------------------------------------------------
consensus_2379#0 TGGGCTGCTTTGGCCTGACAGAACCCAACCATGGCAGCGATCCCAGCGGCATGGAGACC 629
consensus_2379#1 -----------------------------------------------------------
consensus_2379#2 -----------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |