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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 587 fasta sequence
[CCGTCTCCAAATGGCGACAGACATCGAGAGGCTGGTCTCTTTCGAAGAGGCATATTACGATCAATACGATTACTATAATCTGATGGAATACTCATGCCACGCGCGCGGCAAAGGCAGGACCAAGAGGGAGATCGAGCTGAACACGAACCGCCACAGCCCCGCAGGACACGAGAGGAAGATCGTGGAAAAATTTCAGAACAGCGAGATGAAGCGCAGAAGGACCAAGAGTTCGCCGTCGTAAGGGCCCCCCTCGCTTCTCCAGGTGAGGTGTAGCGGTGCAGATGTGGACCTGACCGGTGTCTGTGGTGTTGACCGTGGTGCTCGAGTGTCGTCTCTGCCTTCCCCGACCCACCGAACGGAGCCTGTGACTCCCGCTGCCCCGCAGGCGGTCGTTAAACGGCTCAACATTCCACACTAACCTGCAACTAGATCTTTGGCTCTCAAGTTACCGCCTGTGCAAGAATAGTTCCTGTTTTATAGGTCATTGGTGTGTGTGCTTCATAGCTATATTTGCGCGTTTAGTCACTTCTGTGGGTGCAGAAGACGTGCTGGATTTTAATTCTATTGAAATAAATGTGATTAAAACA]
[+] EMBL FR0056463 [CCGTCTCCAAATGGCGACAGACATCGAGAGGCTGGTCTCTTTCGAAGAGGCATATTACGATCAATACGATTACTATAATCTGATGGAATACTCATGCCACGCGCGCGGCAAAGGCAGGACCAAGAGGGAGATCGAGCTGAACACGAACCGCCACAGCCCCGCAGGACACGAGAGGAAGATCGTGGAAAAATTTCAGAACAGCGAGATGAAGCGCAGAAGGACCAAGAGTTCGCCGTCGTAAGGGCCCCCCTCGCTTCTCCAGGTGAGGTGTAGCGGTGCAGATGTGGACCTGACCGGTGTCTGTGGTGTTGACCGTGGTGCTCGAGTGTCGTCTCTGCCTTTCCCGACCCACCGAACGGAGCCTGTGACTCCCGCTG ]
[+] EMBL CA333377 [ GACCGTGGTGCTCGAGTGTCGTCTCTGCCTTCCCCGACCCACCGAACGGAGCCTGTGACTCCCGCTGCCCCGCAGGCGGTCGTTAAACGGCTCAACATTCCACACTAACCTGCAACTAGATCTTTGGCTCTCAAGTTACCGCCTGTGCAAGAATAGTTCCTGTTTTATAGGTCATTGGTGTGTGTGCTTCATAGCTATATTTGCGCGTTTAGTCACTTCTGTGGGTGCAGAAGACGTGCTGGATTTTAATTCTATTGAAATAAATGTGATTAAAACA]
consensusID : consensus_2380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence
[CCAGACAGCGATGGCGGCGCCCGTCCTGAGAGTATCCACCCCTCGGTGGGAAAGAATAGCCCGGGTCCTCGTGTGCCTCCTGGGCATACTGCTGTCTCTGTACGCCTTCCACGTGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCATCAGCTGTTCTAAAGTGTTCGGCTCCAGGAATGACGGTCAGTGCGATGGCGGCCCTGATCCTCATGACCACGTCCATCATGTCGGTGGTGGGCTCGCTCTACCTGGGCTACATCCTCTACTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACGCGCTGAACTTCATCCTTTTTGTCCTCAACTACAAGCGACTGGTTTACTTGAACGAGGCCTGGAAGCAGAAGCTCCAGGCCAAGCAGGACTAAGCTGTTCAGAACGGCGGTGAAAAATCAAA]
[+] EMBL BU807854 [CCAGACAGCGATGGCGGCGCCCGTCCTGAGAGTATCCACCCCTCGGTGGGAAAGAATAGCCCGGGTCCTCGTGTGCCTCCTGGGCATACTGCTGTCTCTGTACGCCTTCCACGTGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCATCAGCTGTTCTAAAGTGTTCGGCTCCAGGAATGACGGTCAGTGCGATGGCGGCCCTGATCCTCATGACCACGTCCATCATGTCGGTGGTGGGCTCGCTCTACCTGGGCTACATCCTCTACTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACGCGCTGAACTTCATCCTTTTTGTCCTCAACTACAAGCGACTGGTTTACTTGAACGAGGCCTGGAAGCAGAAGCTCCAGGCCAAGCAGGACTAAGCTGTTCAGAACGGCGGTGAAAAATCAAA]
consensusID : consensus_2380#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[TCGGTGGGAAAGAATAGCCCGGGTCCTCGTGTGCCTCCTGGGCATACTGCTGTCTCTGTACGCCTTCCACGTGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCATCAGCTGTTCTAAAGTGTTCGGCTCCAGGTGGGGCCGAGGATTTGGACTCTTGGGCTCCATTTTTGGGAATGACAGCGCACTGAACCAACCCAACAGCGTCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGAATGACGGTCAGTGCGATGGCGGCCCTGATCCTCATGACCACGTCCATCATGTCGGTGGTGGGCTCGCTCTACCTGGGCTACATCCTCTACTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACGCGCTGAACTTCATCCTTTTTGGCCT]
[+] EMBL FR0056106 [TCGGTGGGAAAGAATAGCCCGGGTCCTCGTGTGCCTCCTGGGCATACTGCTGTCTCTGTACGCCTTCCACGTGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCATCAGCTGTTCTAAAGTGTTCGGCTCCAGGTGGGGCCGAGGATTTGGACTCTTGGGCTCCATTTTTGGGAATGACAGCGCACTGAACCAACCCAACAGCGTCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGAATGACGGTCAGTGCGATGGCGGCCCTGATCCTCATGACCACGTCCATCATGTCGGTGGTGGGCTCGCTCTACCTGGGCTACATCCTCTACTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACGCGCTGAACTTCATCCTTTTTGGCCT]
consensusID : consensus_2380#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence
[ACACTCGAGCACCACGGTCAACACCACAGACACCGGTCAGGTCCACATCTAGAGGGAGATAAGAAGAAGGCCATGAAGCGAGGGCCGCTGCGGGATCCGGGTCAGCACGGCAGCAGGCGGTCCGCCGTGGTGGGGCCGAGGATTTGGACTCTTGGGCTCCATTTTTGGGAATGACAGCGCACTGAACCAACCCAACAGCGTCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGGACCGCTGGAGTCCAGAGGAGGACGGGGGA]
[+] EMBL FR0063351 [ACACTCGAGCACCACGGTCAACACCACAGACACCGGTCAGGTCCACATCTAGAGGGAGATAAGAAGAAGGCCATGAAGCGAGGGCCGCTGCGGGATCCGGGTCAGCACGGCAGCAGGCGGTCCGCCGTGGTGGGGCCGAGGATTTGGACTCTTGGGCTCCATTTTTGGGAATGACAGCGCACTGAACCAACCCAACAGCGTCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGGACCGCTGGAGTCCAGAGGAGGACGGGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2380#1 CCAGACAGCGATGGCGGCGCCCGTCCTGAGAGTATCCACCCCTCGGTGGGAAAGAATAGC 60
consensus_2380#2 ------------------------------------------TCGGTGGGAAAGAATAGC 18
consensus_2380#3 ------------------------------------------------------------
consensus_2380#0 -CCGTCTCCAAATGGCGACAGACATCGAGAGGCTGGTCTCTTTCGAAGAGGCATATTACG 59
consensus_2380#1 CCGGGTCC---TCGTGTGCCTCCTGGGCATACTGCTGTCTC-TGTACGCCTT---CCACG 113
consensus_2380#2 CCGGGTCC---TCGTGTGCCTCCTGGGCATACTGCTGTCTC-TGTACGCCTT---CCACG 71
consensus_2380#3 ----ACAC---TCGAGCACCACG-GTCAACACCACAGACAC-CGGTCAGGT----CCACA 47
consensus_2380#0 ATCAATACGATTACTATAATCTGATGGAATACTCATGCCACGCGCGCGGCAAAGGCAGGA 119
* * * ** * * * * * *
consensus_2380#1 TGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCA 173
consensus_2380#2 TGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCA 131
consensus_2380#3 TCTAGAGGGAGATAAGAAGAAGGCCATGAAGCGAGGGCCGCTGCGGGATCCGGGTCAGCA 107
consensus_2380#0 CCAAGAGGGAGATCGAGCTGAACACGAACCGCCACAGCCCCGCAGGACACGAGAGGAAGA 179
******* * * * * *
consensus_2380#1 TCA----GCTGTTCTAAAGTGTTCGGCTCCAGGAATGACGGTCAGTGCGATGGCGGCCCT 229
consensus_2380#2 TCA----GCTGTTCTAAAGTGTTCGGCTCCAGGTG----GGGCCGAGGATTTGGACTCTT 183
consensus_2380#3 -CG----GCAGC----AGGCGGTCCGCCGTGGTGG-----GGCCGAGGATTTGGACTCTT 153
consensus_2380#0 TCGTGGAAAAATTTCAGAACAGCGAGATGAAGCGCAGAAGGACCAAGAGTTCGCCGTCGT 239
* * * * * * * * * *
consensus_2380#1 GAT----CCTCATGACCACGTCCATCA----TGTCGGTGGTGG-GCTCGCTCTAC-CTGG 279
consensus_2380#2 GGG----CTCCAT--TTTTGGGAATGA----CAGCG-CACTGA-ACCAACCCAAC-AGCG 230
consensus_2380#3 GGG----CTCCAT--TTTTGGGAATGA----CAGCG-CACTGA-ACCAACCCAAC-AGCG 200
consensus_2380#0 AAGGGCCCCCCTCGCTTCTCCAGGTGAGGTGTAGCGGTGCAGATGTGGACCTGACCGGTG 299
* * * * ** * * ** *
consensus_2380#1 GCTAC---ATCCTCTACTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACG 336
consensus_2380#2 TCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGAATGACGGTCAGTGCGATGG 290
consensus_2380#3 TCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGGACCGCTGGAGTCCAGAGGA 260
consensus_2380#0 TCTGTGGTGTTGACCGTGGTGCTCGAGTGTCGTCTCTGCCTTCCCCGACCCACCGAACGG 359
** * * * *
consensus_2380#1 CG---CTGAACTTCAT--CCTTTT---TGTCCTCAACTACAAGCGACTGGTT-TACTTGA 387
consensus_2380#2 CGGCCCTGATCCTCATGACCACGT---CCATCATGTCGGTGGTGGGCTCGCTCTACCTGG 347
consensus_2380#3 GGACGGGGGA-------------------------------------------------- 270
consensus_2380#0 AGCCTGTGACTCCCGCTGCCCCGCAGGCGGTCGTTAAACGGCTCAACATTCCACACTAAC 419
* *
consensus_2380#1 ACGAGGCCTGGAAGCAGAAGCTCCAGGCCAAGCAGGACTAAGCTGT-TCAGAACGG---- 442
consensus_2380#2 GCTACATCCTCTACTTTGTCCTCAAGGACCTGTGCGTC--ATCTGCGTCACCACGT---- 401
consensus_2380#3 ------------------------------------------------------------
consensus_2380#0 CTGCAACTAGATCTTTGGCTCTCAAGTTACCGCCTGTGCAAGAATAGTTCCTGTTTTATA 479
consensus_2380#1 CGGTGAAAAATCAAA--------------------------------------------- 457
consensus_2380#2 ACGCGCTGAACTTCATCCTTTTTGGCCT-------------------------------- 429
consensus_2380#3 ------------------------------------------------------------
consensus_2380#0 GGTCATTGGTGTGTGTGCTTCATAGCTATATTTGCGCGTTTAGTCACTTCTGTGGGTGCA 539
consensus_2380#1 ------------------------------------------------
consensus_2380#2 ------------------------------------------------
consensus_2380#3 ------------------------------------------------
consensus_2380#0 GAAGACGTGCTGGATTTTAATTCTATTGAAATAAATGTGATTAAAACA 587
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |