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Takifugu rubripes
cluster # 2381 cluster # 2381       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2381#0 length = 635 sequences # 3  
 consensus_2381#1 length = 602 sequences # 2  
consensusID : consensus_2381#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 635
fasta sequence 
                              [GCACAGCGACATATTGACTCGACTATCTAGTGGAGACCACCCTAATCGCGCGAGGTGTTTTTATGTCTACACTTCTCCGAATATATAACCATCGATATCACGGACATCTAAACACTGCGGGGGCGGAGCGGGTTCGCATTGGGAAGGGACCGAGAAGGATTATTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTAGCTTGGCGGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCCTCAAACTCTGGCAAAACTGAACTGTCCCACACACCTGCCAACGGGATGGCTAAGAAATGGCATATGATGCTGAGATGGAGGAAGGCCTGTACTCCAGACAGCTTTACGTGTTGGGCCATGATGCGATGAAACGCATGCAGAACTCCAATGTCCTTATTTCTGGTATGAGAGGTCTTGGGGTGGAGATTGCCAAGAATGTCATCTTAGGAGGAGTTAAGAGTGTAACTGTACACGACCAAGGTGTTGCAGAATGGAGAGATCTCTCTTCTCAGTTTTACCTTCGAGAGGAAGATTTGGGGAAAAACCGGGCAGAAGTGAGTCAAATCCGCCTGGCTGAGCTCAACAACTACGTCCCTGTGACAGCATACACTGGAGCCCTCACCGAAGACTACCTG]

[+] EMBL CA591406             [GCACAGCGACATATTGACTCGACTATCTAGTGGAGACCACCCTAATCGCCCGACGTCTTTTTATTTCTACACTTCTCCGAATATATAACCATCGATATCACGGACATCTAAACACTGCGGGAGCGGAGCGGGTTCGCATTGGGAAGGGACCGAGAAGGATTATTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCTTGTCAGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCCTCAAACTCTGTCAAAACTGATCTGTCCCACACACCTGCCAACGGCATGGCTAAG AATGGCA ATGATGCTGAGATTGATGAAGGCCTGTACTCCAGACAGCTTTACGTGTTGGGCCATGATGCGATGAAACGCATGCAGAACTCCAATGTCCTTATTTCTGGTATGAGAGGTCTTGGGGTGGAGATTGCCAAGAATGTCATCTTAGGAGGAGTTAAGAGTGTAACTGTACACGACCAAGGTGTTGCAGAATGGAGAGATCTCTCTTCTCAGTTTTACCTTCGAGAGGAAGATTTGGGGAAAAACCGGGCAGAAGTGAGTCAAATCCGCCTGGCTGAGCTCAACAACTACGTCCCTGTGACAGCATACACTGGAGCCCTCACCGAAGACTACCTG]
[+] EMBL FR0059974            [                 CTCGACTATCTAGTGGAGACCACCCTAATCGCGCG GGTGTTTTTATGTCTACACTTCTCCGAATATATAACCATCGATATCACGGACATCTAAACACTGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL FR0058661            [                                                                         TCTCCGAATATATAACCATCGATATCACGGACATCTAAACACTGCGGGGGCGGAGCGGATTCGCATTGGGAAGGGACCGAGAAGGATTATTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTAGCTTGGCGGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCCTCAAACTCTGGCAAAACTGAACTGTCCCACACACCTGCCAACGGGTTGGTTAAGAAATGGCATATGATGCTGAGATGGAGGAAGGCCTGT                                                                                                                                                                                                                                                                                                                 ]




>consensus_2381#0
GCACAGCGACATATTGACTCGACTATCTAGTGGAGACCACCCTAATCGCGCGAGGTGTTT
TTATGTCTACACTTCTCCGAATATATAACCATCGATATCACGGACATCTAAACACTGCGG
GGGCGGAGCGGGTTCGCATTGGGAAGGGACCGAGAAGGATTATTGATGTCCAGCTCGCCG
CTGTCCAAGAAGCGTAGCTTGGCGGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCC
TCAAACTCTGGCAAAACTGAACTGTCCCACACACCTGCCAACGGGATGGCTAAGAAATGG
CATATGATGCTGAGATGGAGGAAGGCCTGTACTCCAGACAGCTTTACGTGTTGGGCCATG
ATGCGATGAAACGCATGCAGAACTCCAATGTCCTTATTTCTGGTATGAGAGGTCTTGGGG
TGGAGATTGCCAAGAATGTCATCTTAGGAGGAGTTAAGAGTGTAACTGTACACGACCAAG
GTGTTGCAGAATGGAGAGATCTCTCTTCTCAGTTTTACCTTCGAGAGGAAGATTTGGGGA
AAAACCGGGCAGAAGTGAGTCAAATCCGCCTGGCTGAGCTCAACAACTACGTCCCTGTGA
CAGCATACACTGGAGCCCTCACCGAAGACTACCTG

consensusID : consensus_2381#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 602
fasta sequence 
                              [CCCGCCACCCTGACACACTTTCCAGTGTGCAGGGAGCGGCACTGTTGAGTTATCTTCTCACTTGTTAGGTTTTCGGCTTTTAAACAATCCGATTTTAACACTACAGATCAGGCCGAGTAATATCGGATGTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCTTGTCAGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCCTCAAACTCTGTCAAAACTGATCTGTCCCACACACCTGCCAACGGCATGGCTAAGAATGGCAATGATGCTGAGATTGATGAAGGCCTGTACTCCAGACAGCTTTACGTGTTGGGCCATGATGCGATGAAACGCATGCAGAACTCCAATGTCCTTATTTCTGGTATGAGAGGTCTTGGGGTGGAGATTGCCAAGAATGTCATCTTAGGAGGAGTTAAGAGTGTAACTGTACACGACCAAGGTGTTGCAGAATGGAGAGATCTCTCTTCTCAGTTTTACCTTCGAGAGGAAGATTTGGGGAAAAACCGGGCAGAAGTGAGTCAAATCCGCCTGGCTGAGCTCAACAACTACGTCCCTGTGACAGCATACACTGGAGCCCTCACCGAAGACTACCTGACC]

[+] EMBL BU807558             [CCCGCCACCCTGACACACTTTCCAGTGTGCAGTTAACGGCACTGTTGAGTTATCTTCTCACTTGTTAGGTTTTCGGCTTTTAAACAATCCGATTTTAACACTACAGATCAGGCCGAGTAATATCGGATGTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCTTGTCAGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCCTCAAACTCTGTCAAAACTGATCTGTCCCACACACCTGCCAACGGCATGGCTAAGAATGGCAATGATGCTGAGATTGATGAAGGCCTGTACTCCAGACAGCTTTACGTGTTGGGCCATGATGCGATGAAACGCATGCAGAACTCCAATGTCCTTATTTCTGGTATGAGAGGTCTTGGGGTGGAGATTGCCAAGAATGTCATCTTAGGAGGAGTTAAGAGTGTAACTGTACACGACCAAGGTGTTGCAGAATGGAGAGATCTCTCTTCTCAGTTTTACCTTCGAGAGGAAGATTTGGGGAAAAACCGGGCAGAAGTGAGTCAAATCCGCCTGGCTGAGCTCAACAACTACGTCCCTGTGACAGCATACACTGGAGCCCTCACCGAAGACTACCTGACC]
[+] EMBL FR0059746            [         CTGACACACTTTCCAGTGTGCAGGGAGCGGCACTGTTGAGTTATCTTCTCACTTGTTAGGTTTTCGGCTTTTAAACAATCCGATTTTAACACTACAGATCAGGCCGAGTAATATCGGATGTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCTTGTCAGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCCTCAAACTCTGTCAAAACTGATCTGTCCCACACACCTGCCAACGGCATGGCTAAGAATGGCAATGATGCTGAGATTGATGAAGGCCTGTACTCCAGACAGCTTTACGTGTTGGGCCATGATGCGATGAAACGCATGCAGAACTCCAATGTCCTTATTTCTGGTATGAGAGGTCTTGGGGTGGAGATTG                                                                                                                                                                                                                 ]




>consensus_2381#1
CCCGCCACCCTGACACACTTTCCAGTGTGCAGGGAGCGGCACTGTTGAGTTATCTTCTCA
CTTGTTAGGTTTTCGGCTTTTAAACAATCCGATTTTAACACTACAGATCAGGCCGAGTAA
TATCGGATGTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCTTGTCAGGAACAGAGA
CGAAGACGGGATCCCACTGCTCCTCCTCAAACTCTGTCAAAACTGATCTGTCCCACACAC
CTGCCAACGGCATGGCTAAGAATGGCAATGATGCTGAGATTGATGAAGGCCTGTACTCCA
GACAGCTTTACGTGTTGGGCCATGATGCGATGAAACGCATGCAGAACTCCAATGTCCTTA
TTTCTGGTATGAGAGGTCTTGGGGTGGAGATTGCCAAGAATGTCATCTTAGGAGGAGTTA
AGAGTGTAACTGTACACGACCAAGGTGTTGCAGAATGGAGAGATCTCTCTTCTCAGTTTT
ACCTTCGAGAGGAAGATTTGGGGAAAAACCGGGCAGAAGTGAGTCAAATCCGCCTGGCTG
AGCTCAACAACTACGTCCCTGTGACAGCATACACTGGAGCCCTCACCGAAGACTACCTGA
CC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2381#0      GCACAGCGACATATTGACTCGACTATCTAGTGGAGACCACCCTAATCGCGCGAGGTGTTT 60
consensus_2381#1      ----CCCGCCACCCTGACAC-ACTTTCCAGTG-----TGCAGGGAGCG-GCACTGTTGAG 49
                            ** **   **** * *** ** ****       *    * ** **   **    

consensus_2381#0      TTATGTCTACACTTCTCCGAATATATAACCATCGATATCACGGACATCTAAACACTGCGG 120
consensus_2381#1      TTATCTTCTCACTTGTTAGGTTTTCGGCTTTTAAACAATCCG---ATTTTAACACTACAG 106
                      **** *   ***** *  *  * *       *  * *   **   ** * ****** * *

consensus_2381#0      GGGCGGAGCGGGTTCGCATTGGGAAGGGACCGAGAAGGATTATTGATGTCCAGCTCGCCG 180
consensus_2381#1      --ATCAGGCCGAGTAATATCGGATG------------------TGATGTCCAGCTCGCCG 146
                             ** *  *   ** **                     *****************

consensus_2381#0      CTGTCCAAGAAGCGTAGCTTGGCGGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCC 240
consensus_2381#1      CTGTCCAAGAAGCGTCGCTTGTCAGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCC 206
                      *************** ***** * ************************************

consensus_2381#0      TCAAACTCTGGCAAAACTGAACTGTCCCACACACCTGCCAACGGGATGGCTAAGAAATGG 300
consensus_2381#1      TCAAACTCTGTCAAAACTGATCTGTCCCACACACCTGCCAACGGCATGGCTAAGAA-TGG 265
                      ********** ********* *********************** *********** ***

consensus_2381#0      CATATGATGCTGAGATGGAGGAAGGCCTGTACTCCAGACAGCTTTACGTGTTGGGCCATG 360
consensus_2381#1      CA-ATGATGCTGAGATTGATGAAGGCCTGTACTCCAGACAGCTTTACGTGTTGGGCCATG 324
                      ** ************* ** ****************************************

consensus_2381#0      ATGCGATGAAACGCATGCAGAACTCCAATGTCCTTATTTCTGGTATGAGAGGTCTTGGGG 420
consensus_2381#1      ATGCGATGAAACGCATGCAGAACTCCAATGTCCTTATTTCTGGTATGAGAGGTCTTGGGG 384
                      ************************************************************

consensus_2381#0      TGGAGATTGCCAAGAATGTCATCTTAGGAGGAGTTAAGAGTGTAACTGTACACGACCAAG 480
consensus_2381#1      TGGAGATTGCCAAGAATGTCATCTTAGGAGGAGTTAAGAGTGTAACTGTACACGACCAAG 444
                      ************************************************************

consensus_2381#0      GTGTTGCAGAATGGAGAGATCTCTCTTCTCAGTTTTACCTTCGAGAGGAAGATTTGGGGA 540
consensus_2381#1      GTGTTGCAGAATGGAGAGATCTCTCTTCTCAGTTTTACCTTCGAGAGGAAGATTTGGGGA 504
                      ************************************************************

consensus_2381#0      AAAACCGGGCAGAAGTGAGTCAAATCCGCCTGGCTGAGCTCAACAACTACGTCCCTGTGA 600
consensus_2381#1      AAAACCGGGCAGAAGTGAGTCAAATCCGCCTGGCTGAGCTCAACAACTACGTCCCTGTGA 564
                      ************************************************************

consensus_2381#0      CAGCATACACTGGAGCCCTCACCGAAGACTACCTG--- 635
consensus_2381#1      CAGCATACACTGGAGCCCTCACCGAAGACTACCTGACC 602
                      ***********************************


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)