These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 822 fasta sequence [TGCTGACTCCAGGATTCAAAGGATTTAATCGTTTCCCGTCCAACCCAAAAGAAAATGGCCAATAAGATGGC-CATCGTGGCGGTGATGCTGCTGCTGCTGGTGGCGGCCGGCACGTTTCTCGGGGTTTTCTACGGCGTGGGGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTGGCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATGGGCATC-GGCGGAGGGC-TTTTCCTGACCATCTACGATGCAAACTCTGGGAAGACCGTGACCATTGACGCCAGAGAGACGGCACCACGCAACGCAACACAGGACATGTTTGGGAGCAATCCCGATGCATCAACGACAGGAGGGTTGTCTATCGCCGTGCCGGGGGAGCTTCGAGGGTATGAGATGGCACACCAAAAATACGGCAAGCTTCCCTGGAAAGACCTCTTCCAGCCCAGCATCGATTATGCAGAGAAAGGCTTCCCCGTGGGGAAGGCGCTCGCCAAGGCCTTGGCCGAGAAAAAGCGAACCATCGTCGAAGATAAAAACTTATGTGAGGTGTTTTGCAACCAAAATAAAAGCGACGTCCTGAAAGAAAAAGAAATTCTCCGATACCCCAAGCTTGCAGAAACCTACAGGACAATAGCAGCGGAGGGGGCTAAGGCTTTCTACGAGGGCCCGCTCGCTCAGAACCTCGTAGCGGACATTCAGGCAGCAGAGGGCATCATCACAATGGAGGACCTGAGG] [+] EMBL CA589960 [TGCTGACTCCAGGATTCAAAGGATTTAATCGTTTCCCGTCCAACCCAAAAGAAAATGGCCAATAAGATGGC CATCGTGGCGGTGATGCTGCTGCTGCTGGTGGCGGCCGGCACGTTTCTCGGGGTTTTCTACGGCGTGGGGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTGGCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATGGGCATC GGCGGAGGGC TTTTCCTGACCATCTACGATGCAAACTCTGGGAAGACCGTGACCATTGACGCCAGAGAGACGGCACCACGCAACGCAACACAGGACATGTTTGGGAGCAATCCCGATGCATCAACGACAGGAGGGTTGTCTATCGCCGTGCCGGGGGAGCTTCGAGGGTATGAGATGGCACACCAAAAATACGGCAAGCTTCCCTGGAAAGACCTCTTCCAGCCCAGCATCGATTATGCAGAGAAAGGCTTCCCCGTGGGGAAGGCGCTCGCCAAGGCCTTGGCCGAGAAAAAGCGAACCATCGTCGAAGATAAAAACTTATGTGAGGTGTTT ] [+] EMBL FR0059391 [ AAGAAAATGGCCAATAAGATGGCTCATCGTGGCGGTGATGCTGCTGCTGCTGGAGGCGGCCGGCACGTTTCTCGGGGTTTTCTACGGCGTGGGGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTGGCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCAT CATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATGGGCATC GGCGGAGGGC TTTTTCTGACCATCTACGATGCAAACTCTGGGAAGACCGTGACCATTGACGCCAGAGAGGACGCACCACGCAACGAAACACAGGACATGTGTGGGAGCAATCCCGATGCATCAACGACAGGAGGGTTGCTTATCGCCCGGCC ] [+] EMBL FR0059862 [ AAATGGCCAATAAGATGGC CATCGTGGCGGTGATGCTGCTGCTGCTGGTGGCGGCCGGCACGTTTCTCGGGGTTTTCTACGGCGTGGGGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTGGCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGGGTCTCTACTGTGCGGGGGACTGATGAACCCCCACAGCATGGGCCTC GGGCGGAGGC TTT ] [+] EMBL FR0059952 [ CATCGTGGCGGTGATGCTGCTGCTGCTGGGGGGCGGCCGCACGGGTCTCGTCGTTTTCTACGGCGTGGGGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGGGGCGGCAGACGCAGGGCCGCGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGCGCCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATGGGCATCGGGGGGAGGGCTTTTTCCTGACCATCTACGATACAAACCTTTGGAAGACCGTGACCATT ] [+] EMBL CA591612 [ TGCTGCTGCTGCTGGTGGCGGCCGGCACGTTTCTCGGGGTTTTCTACGGCGTGGGGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTGGCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATGGGCATC GGCGGAGGGC TTTTCCTGACCATCTACGATGCAAACTCTGGGAAGACCGTGACCATTGACGCCAGAGAGACGGCACCACGCAACGCAACACAGGACATGTTTGGGAGCAATCCCGATGCATCAACGACAGGAGGGTTGTCTATCGCCGTGCCGGGGGAGCTTCGAGGGTATGAGATGGCACACCAAAAATACGGCAAGCTTCCCTGGAAAGACCTCTTCCAGCCCAGCATCGATTATGCAGAGAAAGGCTTCCCCGTGGGGAAGGCGCTCGCCAAGGCCTTGGCCGAGAAAAAGCGAACCATCGTCGAAGATAAAAACTTATGTGAGGTGTTTTGCAACCAAAATAAAAGCGACGTCCTGAAAGAAAAAGAAATTCTCCGATACCCCAAGCTTGCAGAAACCTACAGGACAATAGCAGCGGAGGGGGCTAAGGCTTTCTACGAGGGCCCGCTCGCTCAGAACCTCGTAGCGGACATTCAGGCAGCAGAGGGCATCATCACAATGGAGGACCTGAGG] consensusID : consensus_2390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence [TGGCCAATAAGATGGCCATCGTGGCGGTGATGCTGCTGCTGCTGGAGGCGGGCGGCACGTTTCTCGGGGTTTTCTACGGCGCGGTGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTGGCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATGGGCATCGGCGGAGGGCTTTTCCTGACCATCTACGAAGCAAAACTCTGGGACGGCTTCATCTTTCCCCACTAGAAGAGCCT] [+] EMBL FR0059396 [TGGCCAATAAGATGGCCATCGTGGCGGTGATGCTGCTGCTGCTGGAGGCGGGCGGCACGTTTCTCGGGGTTTTCTACGGCGCGGTGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTGGCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCTGCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATGGGCATCGGCGGAGGGCTTTTCCTGACCATCTACGAAGCAAAACTCTGGGACGGCTTCATCTTTCCCCACTAGAAGAGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2390#0 TGCTGACTCCAGGATTCAAAGGATTTAATCGTTTCCCGTCCAACCCAAAAGAAAATGGCC 60 consensus_2390#1 -------------------------------------------------------TGGCC 5 ***** consensus_2390#0 AATAAGATGGCCATCGTGGCGGTGATGCTGCTGCTGCTGGTGGCGGCCGGCACGTTTCTC 120 consensus_2390#1 AATAAGATGGCCATCGTGGCGGTGATGCTGCTGCTGCTGGAGGCGGGCGGCACGTTTCTC 65 **************************************** ***** ************* consensus_2390#0 GGGGTTTTCTACGGCGTGGGGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTG 180 consensus_2390#1 GGGGTTTTCTACGGCGCGGTGAGGCGCCAACACAACGAGGGCTTCTACAGGGCGGCCGTG 125 **************** ** **************************************** consensus_2390#0 GCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCT 240 consensus_2390#1 GCGGCAGACGCAGGGCCGTGTTCAGATGTGGGCATAAGCATCCTGAAAAAACAGGGTTCT 185 ************************************************************ consensus_2390#0 GCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATG 300 consensus_2390#1 GCTGTAGACGCCTGCATCGCGTCTCTACTGTGCGTGGGACTGATGAACCCCCACAGCATG 245 ************************************************************ consensus_2390#0 GGCATCGGCGGAGGGCTTTTCCTGACCATCTACGATGCAAA-CTCTGGGAAGACCGTGAC 359 consensus_2390#1 GGCATCGGCGGAGGGCTTTTCCTGACCATCTACGAAGCAAAACTCTGGGACGGCTTCATC 305 *********************************** ***** ******** * * * consensus_2390#0 CATTGACGCCAGAGAGACGGCACCACGCAACGCAACACAGGACATGTTTGGGAGCAATCC 419 consensus_2390#1 TTTCCCCACTAGAAGAGCCT---------------------------------------- 325 * * * *** * consensus_2390#0 CGATGCATCAACGACAGGAGGGTTGTCTATCGCCGTGCCGGGGGAGCTTCGAGGGTATGA 479 consensus_2390#1 ------------------------------------------------------------ consensus_2390#0 GATGGCACACCAAAAATACGGCAAGCTTCCCTGGAAAGACCTCTTCCAGCCCAGCATCGA 539 consensus_2390#1 ------------------------------------------------------------ consensus_2390#0 TTATGCAGAGAAAGGCTTCCCCGTGGGGAAGGCGCTCGCCAAGGCCTTGGCCGAGAAAAA 599 consensus_2390#1 ------------------------------------------------------------ consensus_2390#0 GCGAACCATCGTCGAAGATAAAAACTTATGTGAGGTGTTTTGCAACCAAAATAAAAGCGA 659 consensus_2390#1 ------------------------------------------------------------ consensus_2390#0 CGTCCTGAAAGAAAAAGAAATTCTCCGATACCCCAAGCTTGCAGAAACCTACAGGACAAT 719 consensus_2390#1 ------------------------------------------------------------ consensus_2390#0 AGCAGCGGAGGGGGCTAAGGCTTTCTACGAGGGCCCGCTCGCTCAGAACCTCGTAGCGGA 779 consensus_2390#1 ------------------------------------------------------------ consensus_2390#0 CATTCAGGCAGCAGAGGGCATCATCACAATGGAGGACCTGAGG 822 consensus_2390#1 ------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |