cluster # 2416

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Takifugu rubripes
cluster # 2416 cluster # 2416 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2416#0 length = 626 sequences # 5

consensus_2416#1 length = 368 sequences # 1

consensusID : consensus_2416#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 626
fasta sequence

                              [GTCGACAGAGCGAGACCTTGAAACCACATTTTCCCATCCGATGGCTTTGTTTGCGCCACATCCTCTATATCCTCCAACACATGAATCGGCTCCAAAATGTACAACAGCACATCATGAACAGGAGCTCTGGGATTTGATAGAACAGACAGAAACAGCAGTACCAATATCTCCGGTCCAGGACCAGTCAGTCCACCCAGATATGCAAAATGCAAAGCCTTCTTTTGTCCTTCCTGACTTTGATGACATGGAATTTAATGACCTCAAACATTTTTGGAACTGTTTCGAAACGATGCCACCAGAAAATGTTTCTGATGAAGCCTTTATGGCTCATTTTCCTGCCAAGCTAGTCCCCCCTTCTCTGCAGTCTGCACCCCATCCTACTCCTCCACTTGCACATGCTCCAAATGAGTCAGATCCACCCACCCCGACTCCTGTTCCACCTCCCAGTACGAGTCCTATATCGGCACTACCACCTGGATCTCCCCAACCTGGGCAAAATTGCCCAAAGCTCAACTTCGTTTTTGGGTCTATAAAGAAAAAGTTGCCGATTAAGGAGTCTAAGACGAAAAGAAAAGGTCAACGAGGCAAAAAAAAGCCTGATTCAGCATCAAAAAGCACCCAAGACC]

[+] EMBL CA590663             [GTCGACAGAGCGAGACCTTGAAACCACATTTTCCCATCCGATGGCTTTGTTTGCGCCACATCCTCTATATCCTCCAACACATGAATCGGCTCCAAAATGTACAACAGCACATCATGAACAGGAGCTCTGGGATTTGATAGAACAGACAGAAACAGCAGTACCAATATCTCCGGTCCAGGACCAGTCAGTCCACCCAGATATGCAAAATGCAAAGCCTTCTTTTGTCCTTCCTGACTTTGATGACATGGAATTTAATGACCTCAAACATTTTTGGAACTGTTTCGAAACGATGCCACCAGAAAATGTTTCTGATGAAGCCTTTATGGCTCATTTTCCTGCCAAGCTAGTCCCCCCTTCTCTGCAGTCTGCACCCCATCCTACTCCTCCACTTGCACATGCTCCAAATGAGTCAGATCCACCCACCCCGACTCCTGTTCCACCTCCCAGTACGAGTCCTATATCGGCACTACCACCTGGATCTCCCCAACCTGGGCAAAATTGCCCAAAGCTCAACTTCGTTTTTGGGTCTATAAAGAAAAAGTTGCCGATTAAGGAGTCTAAGACGAAAAGAAAAGGTCAACGAGGCAAAAAAAAGCCTGATTCAGCATCAAAAAG           ]
[+] EMBL CA332738             [GTCGACAGAGCGAGACCTTGAAACCACATTTTCCCATCCGATGGCTTTGTTTGCGCCACATCCTCTATATCCTCCAACACATGAATCGGCTCCAAAATGTACAACAGCACATCATGAACAGGAGCTCTGGGATTTGATAGAACAGACAGAAACAGCAGTACCAATATCTCCGGTCCAGGACCAGTCAGTCCACCCAGATATGCAAAATGCAAAGCCTTCTTTTGTCCTTCCTGACTTTGATGACATGGAATTTAATGACCTCAAACATTTTTGGAACTGTTTCGAAACGATGCCACCAGAAAATGTTTCTGATGAAGCCTTTATGGCTCATTTTCCTGCCAAGCTAGTCCCCCCTTCTCTGCAGTCTGCACCCCATCCTACTCCTCCACTTGCACATGCTCCAAATGAGTCAGATCCACCCACCCCGACTCCTGTTCCACCTCCCAGTACGAGTCCTATATCGGCACTACCACCTGGATCTCCCCAACCTGGGCAAAATTGCCCAAAGCTCAACTTCGTTTTTGGGTCTATAAAGAAAAAGTTGCCGATTAAGGAGTCTAAGACGAAAAGAAAAGGTCAACGAGGCAAAAAAAAG                               ]
[+] EMBL BU807653             [ TCGACAGAGCGAGACCTTGAAACCACATTTTCCCATCCGATGGCTTTGTTTGCGCCACATCCTCTATATCCTCCAACACATGAATCGGCTCCAAAATGTACAACAGCACATCATGAACAGGAGCTCTGGGATTTGATAGAACAGACAGAAACAGCAGTACCAATATCTCCGGTCCAGGACCAGTCAGTCCACCCAGATATGCAAAATGCAAAGCCTTCTTTTGTCCTTCCTGACTTTGATGACATGTAATTTAATGACCTCAAACATTTTTGGAACTGTTTCGAAACGATGCCACCAGAAAATGTTTCTGATGAAGCCTTTGTGGCTCATTTTCCTGCCAAGCTAGTCCCCCCTTCTCTGCAGTCTGCACCCCATCCTACTCCTCCACTTGCACATGCTCCAAATGAGTCAGATCCACCCACCCCGACTCCTGTTCCACCTCCCAGTACGAGTCCTATATCGGCACTACCACCTGGATCTCCCCAACCTGGGCAAAATTGCCCAAAGCTCAACTTCGTTTTTGGGTCTATAAAGAAAAAGTTGCCGATTAAGGAGTCTAAGACGAAAAGAAAAGGTCAACGAGGCAAAAAAAAGCCTGATTCAGCATCAAAAAGCACCCAAGACC]
[+] EMBL FR0060248            [                                       GATGGCTTTGTTTGCGCCACATCCTCTATATCCTCCAACACATGAATCGGCTCCAAAATGTACAACAGCACATCATGAACAGGAGCTCTGGGATTTGATAGAACAGACAGAAACAGCAGTACCAATATCTCCGGTCCAGGACCAGTCAGTCCACCCAGATATGCAAAATGCAAAGCCTTCTTTTGTCCTTCCTGACTTTGATGACATGGAATTTAATGACCTCAAACATTTTTGGAACTGTTTCGAAACGATGCCACCAGAAAATGTTTCTGATGAAGCCTTTATGGCTCATTTTCCTGCCAAGCTAGTCCCCCCTTCTCTGCAGGCTGCACCCCATCCTACTCCTCCACTTGCACATGCTCCAAATGAGTCAGATCCACCCACCCCGACTCCTGTNTCACCT                                                                                                                                                                                        ]
[+] EMBL FR0060732            [                                                           ATCCTCTATATCCTGCAACACATTAATCGNCTCCAAAATGCCCAACAGCACATCATGAACAGGAGCTCTGGGATTTGATAGAACAGACAGAAACAGCAGTACCAATATCTCCGGTCCAGGACCAGTCAGTCCACCCAGACATGCAAAATGCAAAGCCTTCTTTTGTCCTTCCTGACTTTGAGGACATGGAATTTAATGACCTCAAACATTTTTGGAACTGTTTCGAAACGATGCCACCAGAAAATGTTTCTGATGAAGCCTTTATGGGTCATTTTCCTG                                                                                                                                                                                                                                                                                                ]




>consensus_2416#0
GTCGACAGAGCGAGACCTTGAAACCACATTTTCCCATCCGATGGCTTTGTTTGCGCCACA
TCCTCTATATCCTCCAACACATGAATCGGCTCCAAAATGTACAACAGCACATCATGAACA
GGAGCTCTGGGATTTGATAGAACAGACAGAAACAGCAGTACCAATATCTCCGGTCCAGGA
CCAGTCAGTCCACCCAGATATGCAAAATGCAAAGCCTTCTTTTGTCCTTCCTGACTTTGA
TGACATGGAATTTAATGACCTCAAACATTTTTGGAACTGTTTCGAAACGATGCCACCAGA
AAATGTTTCTGATGAAGCCTTTATGGCTCATTTTCCTGCCAAGCTAGTCCCCCCTTCTCT
GCAGTCTGCACCCCATCCTACTCCTCCACTTGCACATGCTCCAAATGAGTCAGATCCACC
CACCCCGACTCCTGTTCCACCTCCCAGTACGAGTCCTATATCGGCACTACCACCTGGATC
TCCCCAACCTGGGCAAAATTGCCCAAAGCTCAACTTCGTTTTTGGGTCTATAAAGAAAAA
GTTGCCGATTAAGGAGTCTAAGACGAAAAGAAAAGGTCAACGAGGCAAAAAAAAGCCTGA
TTCAGCATCAAAAAGCACCCAAGACC

consensusID : consensus_2416#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence

                              [CGATGGCTTTGTTTGCGCCACATCCTCTATATCCTCCAACACATGAATCGGCTCCAAAATGTACAACAGCACATCATGAACAGGAGCTCTGGGATTTGATAGAACAGACAGAAACAGCAGTACCAATATCTCCGGTCCAGGACCAGTCAGTCCACCCAGATATGCAAAATGCAAAGCCTTCTTTTGTCCTTCCTGACCCTGATTCAGCATCAAAAAGCACCCAAGACCAGCACGGGCATTTCCTGGGATGGATGAGCGGACAACAGTTGTTCAAGGTTCCGGAGGACGGCAGTGACAGAGATGACAACAATCGGGTTTACATCAAAAAGCCTCCCAATGCCTTCATGCTGTTTATGGAACAGCAAAGA]

[+] EMBL FR0060255            [CGATGGCTTTGTTTGCGCCACATCCTCTATATCCTCCAACACATGAATCGGCTCCAAAATGTACAACAGCACATCATGAACAGGAGCTCTGGGATTTGATAGAACAGACAGAAACAGCAGTACCAATATCTCCGGTCCAGGACCAGTCAGTCCACCCAGATATGCAAAATGCAAAGCCTTCTTTTGTCCTTCCTGACCCTGATTCAGCATCAAAAAGCACCCAAGACCAGCACGGGCATTTCCTGGGATGGATGAGCGGACAACAGTTGTTCAAGGTTCCGGAGGACGGCAGTGACAGAGATGACAACAATCGGGTTTACATCAAAAAGCCTCCCAATGCCTTCATGCTGTTTATGGAACAGCAAAGA]




>consensus_2416#1
CGATGGCTTTGTTTGCGCCACATCCTCTATATCCTCCAACACATGAATCGGCTCCAAAAT
GTACAACAGCACATCATGAACAGGAGCTCTGGGATTTGATAGAACAGACAGAAACAGCAG
TACCAATATCTCCGGTCCAGGACCAGTCAGTCCACCCAGATATGCAAAATGCAAAGCCTT
CTTTTGTCCTTCCTGACCCTGATTCAGCATCAAAAAGCACCCAAGACCAGCACGGGCATT
TCCTGGGATGGATGAGCGGACAACAGTTGTTCAAGGTTCCGGAGGACGGCAGTGACAGAG
ATGACAACAATCGGGTTTACATCAAAAAGCCTCCCAATGCCTTCATGCTGTTTATGGAAC
AGCAAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2416#0      GTCGACAGAGCGAGACCTTGAAACCACATTTTCCCATCCGATGGCTTTGTTTGCGCCACA 60
consensus_2416#1      --------------------------------------CGATGGCTTTGTTTGCGCCACA 22
                                                            **********************

consensus_2416#0      TCCTCTATATCCTCCAACACATGAATCGGCTCCAAAATGTACAACAGCACATCATGAACA 120
consensus_2416#1      TCCTCTATATCCTCCAACACATGAATCGGCTCCAAAATGTACAACAGCACATCATGAACA 82
                      ************************************************************

consensus_2416#0      GGAGCTCTGGGATTTGATAGAACAGACAGAAACAGCAGTACCAATATCTCCGGTCCAGGA 180
consensus_2416#1      GGAGCTCTGGGATTTGATAGAACAGACAGAAACAGCAGTACCAATATCTCCGGTCCAGGA 142
                      ************************************************************

consensus_2416#0      CCAGTCAGTCCACCCAGATATGCAAAATGCAAAGCCTTCTTTTGTCCTTCCTGACTTTGA 240
consensus_2416#1      CCAGTCAGTCCACCCAGATATGCAAAATGCAAAGCCTTCTTTTGTCCTTCCTGACCCTGA 202
                      *******************************************************  ***

consensus_2416#0      TGACATGGAATTTAATGACCTCAAACATTTTTGGAACTGTTTCGAAACGATGCCACCAGA 300
consensus_2416#1      TTCAGCATCAAAAAGCACCCAAGACCAGCACGGGCATTTCCTGGGATGGATG--AGCGGA 260
                      *        *   *    **   * **     ** * *   * * *  ****  * * **

consensus_2416#0      AAATGTTTCTGATGAAGCCTTTATGGCTCATTTTCCTGCCAAGCTAGTCCCCCCTTCTCT 360
consensus_2416#1      CAACAGTTGT--TCAAGGTTCCGGAGGACGGCAGTGACAGAGATGACAACAATCGGGTTT 318
                       **   ** *  * ***  *     *  *           *    *   *   *   * *

consensus_2416#0      GCAGTCTGCACCCCATCCTACTCCTCCAC-TTGCACATGCTCCAAATGAGTCAGATCCAC 419
consensus_2416#1      ACA-TCAAAAAGCCTCCCAATGCCTTCATGCTGTTTATGGAACAGCAAAGA--------- 368
                       ** **   *  **  ** *  *** **   **   ***   **    **          

consensus_2416#0      CCACCCCGACTCCTGTTCCACCTCCCAGTACGAGTCCTATATCGGCACTACCACCTGGAT 479
consensus_2416#1      ------------------------------------------------------------
                                                                                  

consensus_2416#0      CTCCCCAACCTGGGCAAAATTGCCCAAAGCTCAACTTCGTTTTTGGGTCTATAAAGAAAA 539
consensus_2416#1      ------------------------------------------------------------
                                                                                  

consensus_2416#0      AGTTGCCGATTAAGGAGTCTAAGACGAAAAGAAAAGGTCAACGAGGCAAAAAAAAGCCTG 599
consensus_2416#1      ------------------------------------------------------------
                                                                                  

consensus_2416#0      ATTCAGCATCAAAAAGCACCCAAGACC 626
consensus_2416#1      ---------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)