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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 822 fasta sequence
[TGTCTTTACAACACACCGCTAATGTCGCGTTTCAAGAAAACAGATAAAGTGGATTTCCTGGCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACACCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGCTCAGTTGGCTGCCTGACAGCATCGGGCAGCTCACAAAGGTGAAGATGCTGGATTGCAGCAACAACCAGCTAACGGAGGTTCCTGCCAGCCTGTCGCAGATGTCTGCACTGGAACAGCTCTATCTCCGACACAACAAGCTTGATCTCCTTCCAAATCTCAAATCTCCAGTGCTCAAGGATTTA]
[+] EMBL CA846125 [TGTCTTTACAACACACCGCTAATGTCGCGTTTCAAGAAAACAGATACTTTGGATTTCCTGGCGGGTTTTAGGACAGAAGAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACATCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGCTCAGTTGGCTGCCTGACAGCATCGGGCAGCTCACAAAGGTGAAGATGCTGGATTGCAGCAACAACCAGCTAACGGAGGTTCCTGCCAGCCTGTCGCAGATGTCTGCACTGGAACAGCTCTATCTCCGACACAACAAGCTTGATCTCCTTCCAAATCTCAAATCTCCAGTGCTCAAGGATTTA]
[+] EMBL CA590808 [ AATGTCGCGTTTCAAGAAAACAGATAAAGTGGATTTCCTGGCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTT ]
[+] EMBL BU807382 [ CGTTTCAAGAAAACAGATAAAGTGGATTTCCTGGCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACACCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGCTC ]
[+] EMBL FR0061403 [ GATTTCCTGGCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATCTGGAT ]
[+] EMBL FR0061883 [ TCCTGGCGGGATTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCACGAAAGAGCGGCCAGCTCAACCTTTCTGGTCGAGGTTTGATTGAAGTTCCACAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTCGGCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCC ]
consensusID : consensus_2422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[GCCAATTCACACATACAAGCAGGAAAGATTAAGATTAAGATGTACTTTATTCATCCCCGTAGGGAAATTGAATTGTAGTAGCAATAAAGGACAGAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATGGAATATAATCTAACAGCACTTCTGTATTCTGGCTGCAACCCTTTTCCCAGCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACATCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGC]
[+] EMBL CA590587 [GCCAATTCACACATACAAGCAGGAAAGATTAAGATTAAGATGTACTTTATTCATCCCCGTAGGGAAATTGAATTGTAGTAGCAATAAAGGACAGAGAATGTTTATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCCGACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACACAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATGGAATATAATCTAACAGCACTTCTGTATTCTGGCTGCAACCCTTTTCCCAGCTGGATGACAACCAGCTGAGCTGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAACCAGCTGACATCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTCCAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAGCTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGTCTGCAGAAACTGAACCTGTCCCACAATAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2422#0 TGTCTTTACAACACACCGCTAATGTCGCGTTTCAAGAAAACAGATAAAGTGGATTTCCTG 60
consensus_2422#1 ------------------------------------------------------------
consensus_2422#0 GCGGGTTTTAGGACAGAAAAGCCCGAACCCACAGTTCCTAATGGTCTGCTGAATGCTGCA 120
consensus_2422#1 ----------------GCCAATTCACACATACAAGCAGGAAAGATTAAGATTAAGATGTA 44
* * ** *** ** * * * * ** *
consensus_2422#0 CGAAAGAGCGGCCAGCTCAACCTTTCTGGGCGAGGTTTGATTGAAGTTCCACAGAATGTT 180
consensus_2422#1 CTTTATT-CATCCCCGTAGGGAAATTGAATTGTAGTAGCAATAAAGGAC-AGAGAATGTT 102
* * * ** * * * ** * * *** * * ********
consensus_2422#0 TATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCC 240
consensus_2422#1 TATCGAATAAACTGTGACGTGCCAGAAGAAGCCAAGCAGACGGTATTCTCCGGAGATTCC 162
************************************************************
consensus_2422#0 GACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACA 300
consensus_2422#1 GACCGTTGGTGGGAACAAACGGATCTGACCAAGCTTTTACTGGCCTCCAACCAGTTGACA 222
************************************************************
consensus_2422#0 CAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGAT------------ 348
consensus_2422#1 CAGTTGTCTGACGACATCAGACTGCTTCCTGCTCTCACTGTCCTCGATGGAATATAATCT 282
************************************************
consensus_2422#0 ---------------------------------------CTGGATGACAACCAGCTGAGC 369
consensus_2422#1 AACAGCACTTCTGTATTCTGGCTGCAACCCTTTTCCCAGCTGGATGACAACCAGCTGAGC 342
*********************
consensus_2422#0 TGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAAC 429
consensus_2422#1 TGCCTGCCTGAGGCCCTCCAGGAGCTCCAGGAGCTGCAGCAACTGCGACTCAGTCATAAC 402
************************************************************
consensus_2422#0 CAGCTGACACCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTC 489
consensus_2422#1 CAGCTGACATCACTACCAGCCTGGGTGGCCAATTTAAAGAACCTTGCCAGCCTGGCCCTC 462
********* **************************************************
consensus_2422#0 CAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAG 549
consensus_2422#1 CAGTTCAATCTGCTGGTGAGCCTGCCAGAGGAACTGGGACACCTTAAGAGCCTGATTGAG 522
************************************************************
consensus_2422#0 CTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGT 609
consensus_2422#1 CTGGACCTGTCCAACAACCAACTGAAAGACCTTCCTGCCAATGTGGGCTGTCTCACCTGT 582
************************************************************
consensus_2422#0 CTGCAGAAACTGAACCTGTCCCACAATAAGCTCAGTTGGCTGCCTGACAGCATCGGGCAG 669
consensus_2422#1 CTGCAGAAACTGAACCTGTCCCACAATAAGC----------------------------- 613
*******************************
consensus_2422#0 CTCACAAAGGTGAAGATGCTGGATTGCAGCAACAACCAGCTAACGGAGGTTCCTGCCAGC 729
consensus_2422#1 ------------------------------------------------------------
consensus_2422#0 CTGTCGCAGATGTCTGCACTGGAACAGCTCTATCTCCGACACAACAAGCTTGATCTCCTT 789
consensus_2422#1 ------------------------------------------------------------
consensus_2422#0 CCAAATCTCAAATCTCCAGTGCTCAAGGATTTA 822
consensus_2422#1 ---------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |