Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 243 cluster # 243       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_243#0 length = 585 sequences # 1  
 consensus_243#1 length = 262 sequences # 1  
consensusID : consensus_243#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence 
                              [GACACCAGAAGGGGACAAAGTTGCAGCGACGGATGGGTGATCAAGAACAGCTGTCGTGGGACACAGATCAGTGGAGGTTACCGGGCCAACGTGAGCACTTGGAGTCCTCTGGCTCTACAAGTGAGCCAATGGAAATCTCTCCTAAGAGGAGAGCGCACTTTCTTCATGGACCATATCCAGCCACTCACTTCGGACCTAAAGCTTGTATTCTTCCCAATCCAACTTCAGTCATGCATATCCAGGATCCAGCCAGCCAGCGTCTCACCTGGAACAAACCCCCTGTTAATGTCCTAGTCATCAGAAAAATAAGAGACGAGAGCCTGGTCGAGCCTTTTAAAGAGCTCTGCAGGTTTTTAGTAGAGGAGAAGCAGATGATGGTGTACGTGGAGCGCAGGGTAGCGGATGACGCCGCTCTGTTAAAAGACGAGTCTTTCAGTCTCATCCGCAACCAGCTCTGCACTTTTAGGGAAGGTTATGATGATATCTCCAACTGCATCGACCTGATCATCTGCCTTGGTGGTGATGGGACTCTCCTCTATGCCTCCTCCCTCTTCCAGGACAGCGTGCCTCCTGTCATGGCCTTTC]

[+] EMBL CA329942             [GACACCAGAAGGGGACAAAGTTGCAGCGACGGATGGGTGATCAAGAACAGCTGTCGTGGGACACAGATCAGTGGAGGTTACCGGGCCAACGTGAGCACTTGGAGTCCTCTGGCTCTACAAGTGAGCCAATGGAAATCTCTCCTAAGAGGAGAGCGCACTTTCTTCATGGACCATATCCAGCCACTCACTTCGGACCTAAAGCTTGTATTCTTCCCAATCCAACTTCAGTCATGCATATCCAGGATCCAGCCAGCCAGCGTCTCACCTGGAACAAACCCCCTGTTAATGTCCTAGTCATCAGAAAAATAAGAGACGAGAGCCTGGTCGAGCCTTTTAAAGAGCTCTGCAGGTTTTTAGTAGAGGAGAAGCAGATGATGGTGTACGTGGAGCGCAGGGTAGCGGATGACGCCGCTCTGTTAAAAGACGAGTCTTTCAGTCTCATCCGCAACCAGCTCTGCACTTTTAGGGAAGGTTATGATGATATCTCCAACTGCATCGACCTGATCATCTGCCTTGGTGGTGATGGGACTCTCCTCTATGCCTCCTCCCTCTTCCAGGACAGCGTGCCTCCTGTCATGGCCTTTC]




>consensus_243#0
GACACCAGAAGGGGACAAAGTTGCAGCGACGGATGGGTGATCAAGAACAGCTGTCGTGGG
ACACAGATCAGTGGAGGTTACCGGGCCAACGTGAGCACTTGGAGTCCTCTGGCTCTACAA
GTGAGCCAATGGAAATCTCTCCTAAGAGGAGAGCGCACTTTCTTCATGGACCATATCCAG
CCACTCACTTCGGACCTAAAGCTTGTATTCTTCCCAATCCAACTTCAGTCATGCATATCC
AGGATCCAGCCAGCCAGCGTCTCACCTGGAACAAACCCCCTGTTAATGTCCTAGTCATCA
GAAAAATAAGAGACGAGAGCCTGGTCGAGCCTTTTAAAGAGCTCTGCAGGTTTTTAGTAG
AGGAGAAGCAGATGATGGTGTACGTGGAGCGCAGGGTAGCGGATGACGCCGCTCTGTTAA
AAGACGAGTCTTTCAGTCTCATCCGCAACCAGCTCTGCACTTTTAGGGAAGGTTATGATG
ATATCTCCAACTGCATCGACCTGATCATCTGCCTTGGTGGTGATGGGACTCTCCTCTATG
CCTCCTCCCTCTTCCAGGACAGCGTGCCTCCTGTCATGGCCTTTC

consensusID : consensus_243#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 262
fasta sequence 
                              [CCTTTTTTGTAAAACATGTTGGTGATCTACAGGGATTTTAGCGACATGTGCATGTTTGCCTATTAATGCCAGAAATGGAGAATTCAGAGGCAGGCCTAACTCCAGGTTCCATGGCAGTGCCACAGGAGGATGTGGCAAAGACTGTAGTCACCTGTCGGAGTCAGTCAGGCTCTCTAGGCACAGGGAGAACCGTACCAGGTCACCAAGGAGACACCAGAAGGGGACAAAGTTGCAGCGACGGATGGGTGATCAAGAACAGCTG]

[+] EMBL FR0063960            [CCTTTTTTGTAAAACATGTTGGTGATCTACAGGGATTTTAGCGACATGTGCATGTTTGCCTATTAATGCCAGAAATGGAGAATTCAGAGGCAGGCCTAACTCCAGGTTCCATGGCAGTGCCACAGGAGGATGTGGCAAAGACTGTAGTCACCTGTCGGAGTCAGTCAGGCTCTCTAGGCACAGGGAGAACCGTACCAGGTCACCAAGGAGACACCAGAAGGGGACAAAGTTGCAGCGACGGATGGGTGATCAAGAACAGCTG]




>consensus_243#1
CCTTTTTTGTAAAACATGTTGGTGATCTACAGGGATTTTAGCGACATGTGCATGTTTGCC
TATTAATGCCAGAAATGGAGAATTCAGAGGCAGGCCTAACTCCAGGTTCCATGGCAGTGC
CACAGGAGGATGTGGCAAAGACTGTAGTCACCTGTCGGAGTCAGTCAGGCTCTCTAGGCA
CAGGGAGAACCGTACCAGGTCACCAAGGAGACACCAGAAGGGGACAAAGTTGCAGCGACG
GATGGGTGATCAAGAACAGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_243#0      GACACCAGAAGGGGACAAAGTTGCAGCGACGGATGGGTGATCAAGAACAGCTGTCGTGGG 60
consensus_243#1      ------------------------------------------------------------
                                                                                 

consensus_243#0      ACACAGATCAGTGGAGGTTACCGGGCCAACGTGAGCACTTGGAGTCCTCTGGCTCTACAA 120
consensus_243#1      ------------------------------------------------------------
                                                                                 

consensus_243#0      GTGAGCCAATGGAAATCTCTCCTAAGAGGAGAGCGCACTTTCTTCATGGACCATATCCAG 180
consensus_243#1      -------------------------------------CCTTTTTTGTAAAACATGTT-GG 22
                                                          * ** **  *  * *** *   *

consensus_243#0      CCACTCACTTCGGACCTAAAGCTTGTATTCTTCCCAATCCAACTTCAGTCATGCATATCC 240
consensus_243#1      TGATCTACAG-GGATTTTAGCGACATGTGCATGTTTGCCTA---TTAATGCCAGAAATGG 78
                       *   **   ***  * *      * * * *      * *   * * *     * **  

consensus_243#0      AGGATCCAGCCAGCCAGCGTCTCACCTGGAACAAACCCCCTGTTAATGTCCTAGTCATCA 300
consensus_243#1      AGAATTCAG--AGGCAG-GCCTAACTC----CAGGTTCCATGGCAGTGCCACAGGAGGAT 131
                     ** ** ***  ** *** * ** **      **    ** **  * ** *  **      

consensus_243#0      GAAAAATAAGAGACGAGAGCCTGGTCGAGCCTTTTAAAGAGCTCTGCAGGTTTTTAGTAG 360
consensus_243#1      GTGGCAAAGACTGTAGTCACCTGTCGGAGTCAGTCAG---GCTCTCTAGGCAC------A 182
                     *    * *           ****   *** *  * *    *****  ***          

consensus_243#0      AGGAGAAGCAGATGATGGTGTACGTGGAGCGCAGGGTAGCGGATGACGCCGCTCTGTTAA 420
consensus_243#1      GGGAGAACCGTACCA-GGTCACCAAGGAG---ACACCAGAAGGGGACAAAGTTGCAGCGA 238
                      ****** *  *  * ***   *  ****   *    **  *  ***   * *      *

consensus_243#0      AAGACGAGTCTTTCAGTCTCATCCGCAACCAGCTCTGCACTTTTAGGGAAGGTTATGATG 480
consensus_243#1      CGGATGGGTGATCAAGAA-CAGCTG----------------------------------- 262
                       ** * **  *  **   ** * *                                   

consensus_243#0      ATATCTCCAACTGCATCGACCTGATCATCTGCCTTGGTGGTGATGGGACTCTCCTCTATG 540
consensus_243#1      ------------------------------------------------------------
                                                                                 

consensus_243#0      CCTCCTCCCTCTTCCAGGACAGCGTGCCTCCTGTCATGGCCTTTC 585
consensus_243#1      ---------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)