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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 244 cluster # 244       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_244#0 length = 370 sequences # 1  
 consensus_244#1 length = 336 sequences # 1  
consensusID : consensus_244#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence 
                              [TGAAGATCAAGATCATCGCTCCACCAGAGAGGAAGTACTCTGTTTGGATCGGTGGCTCCATCCTGGCTTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAACAGGAGTATGATGAGGCTGGTCCTTCCATCGTCCACAGGAAATGCTTCTAAACATACAACCAAACTCTTTCTGACCATGGATTTGTTCAATGCCGTCTCCTGTATATATATCTGTATGTTGTACTGTAATAAAGATGAGCCCTTTGAAAAAAAAAAGAAAAAAAAGAAAAAAAGAAACCCCACCCGGGCCCTTTTTGAAAAGGGCGCCCCAGGGGTTTAGCTTTTTTGGCCAAAAAGCCCTTTTGAAAAAAAAGGGGCCCGAGAGA]

[+] EMBL FR0055692            [TGAAGATCAAGATCATCGCTCCACCAGAGAGGAAGTACTCTGTTTGGATCGGTGGCTCCATCCTGGCTTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAACAGGAGTATGATGAGGCTGGTCCTTCCATCGTCCACAGGAAATGCTTCTAAACATACAACCAAACTCTTTCTGACCATGGATTTGTTCAATGCCGTCTCCTGTATATATATCTGTATGTTGTACTGTAATAAAGATGAGCCCTTTGAAAAAAAAAAGAAAAAAAAGAAAAAAAGAAACCCCACCCGGGCCCTTTTTGAAAAGGGCGCCCCAGGGGTTTAGCTTTTTTGGCCAAAAAGCCCTTTTGAAAAAAAAGGGGCCCGAGAGA]




>consensus_244#0
TGAAGATCAAGATCATCGCTCCACCAGAGAGGAAGTACTCTGTTTGGATCGGTGGCTCCA
TCCTGGCTTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAACAGGAGTATGATGAGG
CTGGTCCTTCCATCGTCCACAGGAAATGCTTCTAAACATACAACCAAACTCTTTCTGACC
ATGGATTTGTTCAATGCCGTCTCCTGTATATATATCTGTATGTTGTACTGTAATAAAGAT
GAGCCCTTTGAAAAAAAAAAGAAAAAAAAGAAAAAAAGAAACCCCACCCGGGCCCTTTTT
GAAAAGGGCGCCCCAGGGGTTTAGCTTTTTTGGCCAAAAAGCCCTTTTGAAAAAAAAGGG
GCCCGAGAGA

consensusID : consensus_244#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence 
                              [AGAAGGAGATCACAGCTCTGGCCCCCAGCACCATGAAGATCAAGATCATCGCTCCACCAGACGAGGAAGTACTCTGTTTGGATCGGTGGCTCCATCCTGGCTTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAACAGGAGTATGATGAGGCTGGTCCTTCCATCGTCCACAGGAAATGCTTCTAGACATACAACCAAACTCTTTCTGACCATGGCTTTGTTCAATGCCGTCTCCTGTATATATATCTGTATGTTGTACTGTAATAAAGATGAGCCCTTTGAGAGTAAAAAAAACAGGGAAAAACCCGGGGGGGGCCCGGGTCCCAATTTTTG]

[+] EMBL FR0055131            [AGAAGGAGATCACAGCTCTGGCCCCCAGCACCATGAAGATCAAGATCATCGCTCCACCAGACGAGGAAGTACTCTGTTTGGATCGGTGGCTCCATCCTGGCTTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAACAGGAGTATGATGAGGCTGGTCCTTCCATCGTCCACAGGAAATGCTTCTAGACATACAACCAAACTCTTTCTGACCATGGCTTTGTTCAATGCCGTCTCCTGTATATATATCTGTATGTTGTACTGTAATAAAGATGAGCCCTTTGAGAGTAAAAAAAACAGGGAAAAACCCGGGGGGGGCCCGGGTCCCAATTTTTG]




>consensus_244#1
AGAAGGAGATCACAGCTCTGGCCCCCAGCACCATGAAGATCAAGATCATCGCTCCACCAG
ACGAGGAAGTACTCTGTTTGGATCGGTGGCTCCATCCTGGCTTCCCTGTCCACCTTCCAG
CAGATGTGGATCAGCAAACAGGAGTATGATGAGGCTGGTCCTTCCATCGTCCACAGGAAA
TGCTTCTAGACATACAACCAAACTCTTTCTGACCATGGCTTTGTTCAATGCCGTCTCCTG
TATATATATCTGTATGTTGTACTGTAATAAAGATGAGCCCTTTGAGAGTAAAAAAAACAG
GGAAAAACCCGGGGGGGGCCCGGGTCCCAATTTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_244#0      ---------------------------------TGAAGATCAAGATCATCGCTCCACCAG 27
consensus_244#1      AGAAGGAGATCACAGCTCTGGCCCCCAGCACCATGAAGATCAAGATCATCGCTCCACCAG 60
                                                      ***************************

consensus_244#0      A-GAGGAAGTACTCTGTTTGGATCGGTGGCTCCATCCTGGCTTCCCTGTCCACCTTCCAG 86
consensus_244#1      ACGAGGAAGTACTCTGTTTGGATCGGTGGCTCCATCCTGGCTTCCCTGTCCACCTTCCAG 120
                     * **********************************************************

consensus_244#0      CAGATGTGGATCAGCAAACAGGAGTATGATGAGGCTGGTCCTTCCATCGTCCACAGGAAA 146
consensus_244#1      CAGATGTGGATCAGCAAACAGGAGTATGATGAGGCTGGTCCTTCCATCGTCCACAGGAAA 180
                     ************************************************************

consensus_244#0      TGCTTCTAAACATACAACCAAACTCTTTCTGACCATGGATTTGTTCAATGCCGTCTCCTG 206
consensus_244#1      TGCTTCTAGACATACAACCAAACTCTTTCTGACCATGGCTTTGTTCAATGCCGTCTCCTG 240
                     ******** ***************************** *********************

consensus_244#0      TATATATATCTGTATGTTGTACTGTAATAAAGATGAGCCCTTTGAAAAAAAAAAGAAAAA 266
consensus_244#1      TATATATATCTGTATGTTGTACTGTAATAAAGATGAGCCCTTTGAGAGTAAAAA--AAAC 298
                     ********************************************* *  *****  *** 

consensus_244#0      AAAGAAAAAAAGAAACCCCACCCGGGCCC---TTTTTGAAAAGGGCGCCCCAGGGGTTTA 323
consensus_244#1      AGGGAAAAACCCGGGGGGGGCCCGGGTCCCAATTTTTG---------------------- 336
                     *  ******           ****** **   ******                      

consensus_244#0      GCTTTTTTGGCCAAAAAGCCCTTTTGAAAAAAAAGGGGCCCGAGAGA 370
consensus_244#1      -----------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)