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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2441#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 824 fasta sequence
[GCGAGTTTGTTCACTTTCGCAGTTCTTCGCTCTTCCCAGACATCACCACAGAGCAAAGAAAATGGACAATAGTGGCAAAGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTCGTTTTTTGGAGCACTGTTTGGGGGATCCTCCAGGATGGAAGAGGCCTGTGACTTGTATGTGCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTCTGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCATAGATGCTGGGAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAAACAGAGCTATTGAGATATACACTGATATGGGACGCTTCGTCATCGCAGCCAAACATCATATGCACATCGCTGAAATATATGAGACAGAGCTGATTGACGTTGATAAGGCCATTGCCCATTATGAACAAGCAGGAGATTATTACAAAGGTGAAGAATCTATCAGTTCAGCAAACAAGTGCCTCCTGAAAGTAGCCACTTATGCAGCACAGTTGGAGCAGTACCCAAAAGCCATCGAGATCTTTGAACAGGTTGGAACCTACGCTATGGACAGCACACTTCTCAAATACAGTGCCAAGGATTACTTCTTCAAGGCAGCCCTCTGTCACTTCTGTGTAGACATGCTGAACGCAAAACTTGCAGAGCAGCAGTCTACAGAAATGTTTCCAGCCTTCTCGGACTCTCGCGAATGGAAACTGTTGAGGAAACTTCTAGATGCCTACGATGAGCAGA]
[+] EMBL CA590177 [GCGAGTTTGTTCACTTTCGCAGTTCTTCGCTCTTCCCATACATCCCCACAGAGCAAAGAAAATGGACAATAGTGGCAAAGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTCGTTTTTTGGAGCACTGTTTGGGGGATCCTCCAGGATGGAAGAGGCCTGTGACTTGTATGTGCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGATATGCCTTCTCTGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCATAGATGCTGGAAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAAACAGAGCTATTGAGATATACACTGATATGGGACGCTTCGTCATCGCAGCCAAACATCATATGCACATCGCTGAAATATATGAGACAGA ]
[+] EMBL BU805584 [ TTGTTCACTTTCGCAGTTCTTCGCTCTTCCCAGACTTCACCACAGAGCAAAGAAAATGGACAATAGTGGCAAAGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTCGTTTTTTGGAGCACTGTTTGGGGGATCCTCCAAGATGGAAGAGGCCTGTGACTTGTATGTGCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTCTGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCATAGATGCTGGGAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAAACAGAGCTATTGAGATATACACTGATATGGGACGCTTCGTCATCGCAGCCAAACATCATATGCACATCGCTGAAATATATGAGACAGAGCTGATTGACGTTGATAAGGCCATTGCCCATTATGAACAAGCAGGAGATTATTACAAAGGTGAAGAATCTATCAGTTCAGCAAACAAGTGCCTCCTGAAAGTAGCCACTTATGCAGCACAGTTGGAGCAGTACCCAAAAGCCATCGAGATCTTT ]
[+] EMBL FR0056070 [ AGATTATTACAAAGGTGAAGAATCTATCAGTTCAGCAAACAAGTGCCTCCTGAAAGTAGCCACTTATGCAGCACAGTTGGAGCAGTACCCAACAGCCATCGAGATCTTTGAACAGGTTGGAACCTACGCTATGGACAGCACACTTCTCAAATACAGTGCCAAGGATTACTTCTTCAAGGCAGCCCTCTGTCACTTCTGTGTAGACATGCTGAACGCAAAACTTGCAGAGCAGCAGTCTACAGAAATGTTTCCAGCCTTCTCGGACTCTCGCGAATGGAAACTGTTGAGGAAACTTCTAGATGCCTACGATGAGCAGA]
consensusID : consensus_2441#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 598 fasta sequence
[GAGACTGCGTGGTGCATCTCTCCACCGACGCAACAATCTCCACTCATACACCCAAAAGTGCCTATGAAAAGGAACATCATTTTCCACCTCTAAAAGACTAGGGATGATAGGCATTGCTCAGAGATCGCAGAAGCAGTACGCAGGATATGAATGGAGACCCTGCAGGCGGCTTGCAACATGCTAGCTGCTGTTTTCAAAGAGACATCACCACAGAGCAAAGAAAATGGACAATAGTGGCAAAGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTCGTTTTTTGGAGCACTGTTTGGGGGATCCTCCAAGATGGAAGAGGCCTGTGACTTGTATGTGCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTCTGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCATAGATGCTGGAAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAGACAGAGCTATTGGGATATACACTGATATGGGACGCTTCGTCATCGCAGCCAAACATCATATG]
[+] EMBL CA590455 [GAGACTGCGTGGTGCATCTCTCCACCGACGCAACAATCTCCACTCATACACCCAAAAGTGCCTATGAAAAGGAACATCATTTTCCACCTCTAAAAGACTAGGGATGATAGGCATTGCTCAGAGATCGCAGAAGCAGTACGCAGGATATGAATGGAGACCCTGCAGGCGGCTTGCAACATGCTAGCTGCTGTTTTCAAAGAGACATCACCACAGAGCAAAGAAAATGGACAATAGTGGCAAAGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTCGTTTTTTGGAGCACTGTTTGGGGGATCCTCCAAGATGGAAGAGGCCTGTGACTTGTATGTGCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTCTGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCATAGATGCTGGAAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAAACAGAGCTATTGAGATATACACTGATATGGGACGCTTCGTCATCGCAGCCAAACATCATATG]
[+] EMBL FR0059211 [ AATGGACTTTAGTGGCAAAGAAGAGGAGTTCATGGCTTTAATATCTGAGGCCGAAAAGAAAATGAGATCGTCACAGTCGTTTTTTGGAGCACTGTTTGGGGGATCCTCCAAGATGGAAGAGGCCTGTGACTTGTATGTGCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTCTGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCATAGATGCTGGAAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAGACAGAGCTATTGGGATA ]
[+] EMBL FR0059067 [ GGTCAATAGTGGCAAAGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTCGTTTTTTGGAGCACTGTTTGGGGGATCCTCCAAGATGGAAGAGGCCTGTGACTTGTATGTGCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTCTGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCATAGATGCTGGAAATGCCTTCAAAAAAGCAGATCCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2441#0 ------------------------------------------------------------
consensus_2441#1 GAGACTGCGTGGTGCATCTCTCCACCGACGCAACAATCTCCACTCATACACCCAAAAGTG 60
consensus_2441#0 ------------------------------------------------------------
consensus_2441#1 CCTATGAAAAGGAACATCATTTTCCACCTCTAAAAGACTAGGGATGATAGGCATTGCTCA 120
consensus_2441#0 -----------------------------------------GCGAGTTTGTT-CACTTTC 18
consensus_2441#1 GAGATCGCAGAAGCAGTACGCAGGATATGAATGGAGACCCTGCAGGCGGCTTGCAACATG 180
** * ** ** *
consensus_2441#0 GCAGTTCTTCGCTCTTCCCAGACATCACCACAGAGCAAAGAAAATGGACAATAGTGGCAA 78
consensus_2441#1 CTAGCTGCTGTTTTCAAAGAGACATCACCACAGAGCAAAGAAAATGGACAATAGTGGCAA 240
** * * * *****************************************
consensus_2441#0 AGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTC 138
consensus_2441#1 AGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTC 300
************************************************************
consensus_2441#0 GTTTTTTGGAGCACTGTTTGGGGGATCCTCCAGGATGGAAGAGGCCTGTGACTTGTATGT 198
consensus_2441#1 GTTTTTTGGAGCACTGTTTGGGGGATCCTCCAAGATGGAAGAGGCCTGTGACTTGTATGT 360
******************************** ***************************
consensus_2441#0 GCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTC 258
consensus_2441#1 GCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTC 420
************************************************************
consensus_2441#0 TGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCAT 318
consensus_2441#1 TGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCAT 480
************************************************************
consensus_2441#0 AGATGCTGGGAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAAACAG 378
consensus_2441#1 AGATGCTGGAAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAGACAG 540
********* ********************************************* ****
consensus_2441#0 AGCTATTGAGATATACACTGATATGGGACGCTTCGTCATCGCAGCCAAACATCATATGCA 438
consensus_2441#1 AGCTATTGGGATATACACTGATATGGGACGCTTCGTCATCGCAGCCAAACATCATATG-- 598
******** *************************************************
consensus_2441#0 CATCGCTGAAATATATGAGACAGAGCTGATTGACGTTGATAAGGCCATTGCCCATTATGA 498
consensus_2441#1 ------------------------------------------------------------
consensus_2441#0 ACAAGCAGGAGATTATTACAAAGGTGAAGAATCTATCAGTTCAGCAAACAAGTGCCTCCT 558
consensus_2441#1 ------------------------------------------------------------
consensus_2441#0 GAAAGTAGCCACTTATGCAGCACAGTTGGAGCAGTACCCAAAAGCCATCGAGATCTTTGA 618
consensus_2441#1 ------------------------------------------------------------
consensus_2441#0 ACAGGTTGGAACCTACGCTATGGACAGCACACTTCTCAAATACAGTGCCAAGGATTACTT 678
consensus_2441#1 ------------------------------------------------------------
consensus_2441#0 CTTCAAGGCAGCCCTCTGTCACTTCTGTGTAGACATGCTGAACGCAAAACTTGCAGAGCA 738
consensus_2441#1 ------------------------------------------------------------
consensus_2441#0 GCAGTCTACAGAAATGTTTCCAGCCTTCTCGGACTCTCGCGAATGGAAACTGTTGAGGAA 798
consensus_2441#1 ------------------------------------------------------------
consensus_2441#0 ACTTCTAGATGCCTACGATGAGCAGA 824
consensus_2441#1 --------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |