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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 590 fasta sequence
[CCATGGCTGAGAGACGCATTCCCTTCACCTTGCTCCGGAGCCCCAGC-TGGGATCCAT-TCCGCGACTGGCACCAGCACAGCCGAATCTTTGACCAGGCTTTTGGTATGCCGGTTCTGCCCGAGGACATGAGCACATTTCCCAACACCCACTGGCCCGGGTATATAAGGCCCTCCATCCTGGCCCCTGATATGGGTTTTGTGATGCCCCATGGGTTGTACCCAGGAGCCACAATGGCTCAGCAGGCCCGTGCACTGTCCCGCCAGATGAGCAGTGGCA-TGTCGGAGATCAAGCAGACCCCAGAATCCTGGAAGGTGTC-TCTGGACGTGAATCACTTCTCACCAGAGGAGC-TGGTGGTGAAGACCAAAGACGGAATGGTGGAAATCACTGGCAAGCATGAAGAGAAGAAGGACGAA-CATGGATTTGTGTCCAGAACCTTCACAAGGAAATACACGCTCCCCTCTACAGCCAATACTGAGAAGGTAACTTCCTCCCTGTCTCCTGATGGGGTCCTCACTGTGGAAGCCCCTCTGAAAGTGGCAGCCATTGAGGCTTCCGAGACATCCATACCTGTCACTGTGGACAAGAAGGCT]
[+] EMBL BU805524 [CCATGGCTGAGAGACGCATTCCCTTCACCTTGCTCCGGAGCCCCAGC TGGGATCCAT TCCGCGACTGGCACCAGCACAGCCGAATCTTTGACCAGGCTTTTGGTATGCCGGTTCTGCCCGAGGACATGAGCACATTTCCCAACACCCACTGGCCCGGGTATATAAGGCCCTCCATCCTGGCCCCTGATATGGGTTTTGTGATGCCCCATGGGTTGTACCCAGGAGCCACAATGGCTCAGCAGGCCCGTGCACTGTCCCGCCAGATGAGCAGTGGCA TGTCGGAGATCAAGCAGACCCCAGAATCCTGGAAGGTGTC TCTGGACGTGAATCACTTCTCACCAGAGGAGC TGGTGGTGAAGACCAAAGACGGAATGGTGGAAATCACTGGCAAGCATGAAGAGAAGAAGGACGAA CATGGATTTGTGTCCAGAACCTTCACAAGGAAATACACGCTCCCCTCTACAGCCAATACTGAGAAGGTAACTTCCTCCCTGTCTCCTGATGGGGTCCTCACTGTGGAAGCCCCTCTGAAAGTGGCAGCCATTGAGGCTTCCGAGACATCCATACCTGTCACTGTGGACAAGAAGGCT]
[+] EMBL FR0062717 [ CTGAGAGACGCATTTCCTTCACCTTGCTCCGGAGCCCCAGCGTGGGATCCAT TCCGCNACTGTCACCAGCACAGCCGAATCTTTGACCAGGCTTTTGGTATGCCGCGTCTGCCCGAGGACATGAGCACATTTCCCAACACCCACTGGCCCGGGTATATAAGGCCCTCCATCCTGGCCCCTGATATGGGTTTTGTGATGCCCCATGGGTTGTACCCAGGAGCCACAATGGCTCAGCAGGCCCGTGCACTGTCCCGCCAGATGAGCAGCGGCATTGTCGGAGATCAAGCAGACCCCAGAATCTTGGAAGGTGCCTTCTGGACGTGAATCACTTCTCACCAGAGGAGCTTGGCGGTGAAGACCAAAGACGGAATGGGGGAAAGCACTGGCAAGCATGAGGAGAGGAAGGACGAACCATGGTTTTGTGTCCAGAACCTTC ]
[+] EMBL FR0062450 [ aCTGAGAGACGCATTCCCTTCACCTTGTTCCGGAGCCCCAGC TGTGATCCATGGGCGCGACTGGCACCAGCACAGCCGAATCTTTGACCAGGCTTTTGGTATGCCGGTTCTGCCCGAGGACATGAGCACATTTCCCAACACCCACTGGCCCGGGTATATAAGGCCCTCCATCCTGGCCCCTGATATGGGTTTTGTGATGCCCCATGGGTTGTACCCAGGAGCCACAATGGCTCAGCAGGCCCGTGCACTGTCCCGCCAGATGAGCAGTGGCA TGTCGGAGATCAAGCAGACCCCAGAATCCTGGAAGGAGGC TCTGGACGTGAATCACTTCTCACCAGAGGAGC TGGTGGTGAAGACCAAAGACGGAATGGTGGAAAACACTTGGCAGCATGAAGAG ]
[+] EMBL FR0062668 [ CTGGAGCCCCAGC TGGGATCCAT TCCGCGACTGNCACCACCACAGCCGAATCTTTGACCAGGCTTTTGGTATGCCGGTTCTGCCCGAGGACATGAGCACATTTCCCAACACCCACTGGCCCGGGTATATAAGGCCCTCCATCCTGGCCCCTGATATGGGCTTTGTGATGCCCCATGGGATGTACCCAGGAGCCACAATGGCTCAGCAGGCCCGTGCACTGTCCCGCCAGATGAGCAGAGGCA TGTCGGAGAGGAAGCAGACCCCAGAATCCTGGAAGGTGTC TCTGGGCGGGAATCACTTCTCACCAGAGGAGC TGGTGGTGAAGACCAAAGACGGg ]
[+] EMBL FR0062903 [ TTTGACCAGGCTTTTGGGATGCCGGTTCTGGGGGAGGACATGAGCACATTTCCCAACACCCACTGGCCCGGGTATATAAGGCCCTCCATCCTGGCCCCTGATATGAGTTTTGTGATGCCCCATGGGATGTACCCAGGAGCCACAATGGCTCAGCAGGCCCGTGCACTGTCCCGCCAGATGAGCAGTGGCATTGTCGGAGATCAAGCAGACCCCAGAATTCGTGAAGGGGTC TCTGGACGTGAATCACTTCTCACCAGAGGAGC TGGTGGTGAAGACCAAAGACGTAATGGTGGAAATCACTTGCACGCATGAAGAGAAGAAGGACGAC CATGGATTTGGTGCCAGAACCTTCACAAGGAATTACAC ]
consensusID : consensus_2442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence
[TCCGNANCCCCATCTTTGATCCATTCCGCGACTGGCACCAGCGACACTTAATCTTTGACCACNCTTTTGCCATCCGTTTCTGCCCGATTACATNATCACATTTCCCAACACCCACTTGGCCGTGTATATAAGGCCCTCCATCCTGGCCCCTGATATGTGTTGTGTGATGCCCTATGGGTTGTACCCAAGAGCCACAATGGCTCAGCAGGCCCGTGCACT]
[+] EMBL FR0062567 [TCCGNANCCCCATCTTTGATCCATTCCGCGACTGGCACCAGCGACACTTAATCTTTGACCACNCTTTTGCCATCCGTTTCTGCCCGATTACATNATCACATTTCCCAACACCCACTTGGCCGTGTATATAAGGCCCTCCATCCTGGCCCCTGATATGTGTTGTGTGATGCCCTATGGGTTGTACCCAAGAGCCACAATGGCTCAGCAGGCCCGTGCACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2442#0 CCATGGCTGAGAGACGCATTCCCTTCACCTTGCTCCGGAGCCCCAGCTGGGATCCATTCC 60
consensus_2442#1 ---------------------------------TCCGNANCCCCATCTTTGATCCATTCC 27
**** * ***** ** **********
consensus_2442#0 GCGACTGGCACCAGCACAGCCGAATCTTTGACCAGGCTTTTGGTATGCCGGTTCTGCCCG 120
consensus_2442#1 GCGACTGGCACCAGCGACACTTAATCTTTGACCACNCTTTTGCCAT-CCGTTTCTGCCCG 86
*************** * ************ ****** ** *** *********
consensus_2442#0 AGGACATGAGCACATTTCCCAACACCCACTGGCCCGGGTATATAAGGCCCTCCATCCTGG 180
consensus_2442#1 ATTACATNATCACATTTCCCAACACCCACTTGGCCGTGTATATAAGGCCCTCCATCCTGG 146
* **** * ******************** * *** ***********************
consensus_2442#0 CCCCTGATATGGGTTTTGTGATGCCCCATGGGTTGTACCCAGGAGCCACAATGGCTCAGC 240
consensus_2442#1 CCCCTGATATGTGTTGTGTGATGCCCTATGGGTTGTACCCAAGAGCCACAATGGCTCAGC 206
*********** *** ********** ************** ******************
consensus_2442#0 AGGCCCGTGCACTGTCCCGCCAGATGAGCAGTGGCATGTCGGAGATCAAGCAGACCCCAG 300
consensus_2442#1 AGGCCCGTGCACT----------------------------------------------- 219
*************
consensus_2442#0 AATCCTGGAAGGTGTCTCTGGACGTGAATCACTTCTCACCAGAGGAGCTGGTGGTGAAGA 360
consensus_2442#1 ------------------------------------------------------------
consensus_2442#0 CCAAAGACGGAATGGTGGAAATCACTGGCAAGCATGAAGAGAAGAAGGACGAACATGGAT 420
consensus_2442#1 ------------------------------------------------------------
consensus_2442#0 TTGTGTCCAGAACCTTCACAAGGAAATACACGCTCCCCTCTACAGCCAATACTGAGAAGG 480
consensus_2442#1 ------------------------------------------------------------
consensus_2442#0 TAACTTCCTCCCTGTCTCCTGATGGGGTCCTCACTGTGGAAGCCCCTCTGAAAGTGGCAG 540
consensus_2442#1 ------------------------------------------------------------
consensus_2442#0 CCATTGAGGCTTCCGAGACATCCATACCTGTCACTGTGGACAAGAAGGCT 590
consensus_2442#1 --------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |