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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 958 fasta sequence
[CTAAAGAACAGAGAGGGAGACCTCTGGTGGATAGAAACGAAACTGCAGGGTGGCCAAGTTCTTGTTTGAAGTAGTTTCTTGCAGATATTTAACTCTCAATTGCTTCTAATTGTTGCTCACAGATTAAGTACCATGAGGATATGAGCAAGAGGATGGTGGACGATACTCCACCACCAGGCATCCACAACCAAGCTGATTTTCAGCCACCTGCCAGTTCCCAGACCTACCAATATGATCCTGCTCCTGCACCAGTGCCCCAGCCATATGAGCCTGCTCCTGCACCAGTGCCCCAGGCCGGCGCCCCCCCTCCTTCCTCCACCGGGAAACGCTGCCGGGCCATGTACGACTACACCGCCGCCGACGACGACGAGGTGTCCTTCTTGGACGGGGACGTGATTGTGGATGTGCACCTGATTGACGAGGGCTGGATGTTCGGCCGCGTGGAGCGTACGGGCCAGCAGGGCATGCTGCCTGCTAATTACGTGAATAACATCTGAGTGAGAGAGAGAGAAAGAAAAGGGGGAAGGGAGGAGGAGGGAAAGAAAGAAAAGCCCAGTGCCATCTCATCTTAATGCCGCTTTATCGATTTTACTCCTGTTCCCTAATTTGTCCTGTGATATCCTGACACCACCACCTGTTCACTTTCGCGATTGCTGTGAAGCTCCACCTCAGACACCCTCCACTCGTCCGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCAGTAAAAAAGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCCGCCTCCCTTCCTGCCATCTGTCCGTGCCGACGCCCGTCGTCCTTTTTGTTTCTCCCCATCCTGGCTCGGTTTTAATCGAATTGGAAAGCAAATTTCAGCTCAGCATGTCCAGACTCCCCCATCATGACACAAGCCTCCATCCCGGCCGAGGCACGTAACCAGGGTGATATAACATCGCGCAAAAT]
[+] EMBL CA333081 [CTAAAGAACAGAGAGGGAGACCTCTGGTGGATAGAAACGAAACTGCAGGGTGGCCAAGTTCTTGTTTGAAGTAGTTTCTTGCAGATATTTAACTCTCAATTGCTTCTAATTGTTGCTCACAGATTAAGTACCATGAGGATATGAGCAAGAGGATGGTGGACGATACTCCACCACCAGGCATCCACAACCAAGCTGATTTTCAGCCACCTGCCAGTTCCCAGACCTACCAATATGATCCTGCTCCTGCACCAGTGCCCCAGCCATATGAGCCTGCTCCTGCACCAGTGCCCCAGGCCGGCGCCCCCCCTCCTTCCTCCACCGGGAAACGCTGCCGGGCCATGTACGACTACACCGCCGCCGACGACGACGAGGTGTCCTTCTTGGACGGGGACGTGATTGTGGATGTGCACCTGATTGACGAGGGCTGGATGTTTGGCCGCGTGGAGCGTACGGGCCAGCAGGGCATGCTGCCTGCTAATTACGTGAATAACATCTGAGTGAGAGAGAGAGAAAGAAAAGGGGGAAGGG ]
[-] EMBL CA332377 [ TACACCCCCCCCGACGACGACGAGGTGTCCTTCTTGGACGGGGACGTGATTGTGGATGTGCACCTGATTGACGAGGGCTGGATGTTCGGCCGCGTGGAGCGTACGGGCCAGCAGGGCATGCTGCCTGCTAATTACGTGAATAACATCTGAGTGAGAGAGAGAGAAAGAAAAGGGGGAAGGGAGGAGGAGGGAAAGAAAGAAAAGCCCAGTGCCATCTCATCTTAATGCCGCTTTATCGATTTTACTCCTGTTCCCTAATTTGTCCTGTGATATCCTGACACCACCACCTGTTCACTTTCGCGATTGCTGTGAAGCTCCACCTCAGACACCCTCCACTCGTCCGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCAGTAAAAAAGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCCGCCTCCCTTCCTGCCATCTGTCCGTGCCGACGCCCGTCGTCCTTTTTGTTTCTCCCCATCCTGGCTCGGTTTTAATCGAATTGGAAAGCAAATTTCAGCTCAGCATGTCCAGACTCCCCCATCATGACACAAGCCTCCATCCCGGCCGAGGCACGTAACCAGGGTGATATAACATCGCGCAAAAT]
consensusID : consensus_2446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 614 fasta sequence
[GGCGGCTACAACAATAACCCTCTCCTGGATTTGCTCCACACATGCCACTGGGCACGATCGGCGACCGTAGCTAGTGCGTGTGCGCGTGTTTTTATTTCCGAAGTGGGCAAAACTGCGACCAGAACGTCCAACGGTTTC-CCCGCAAGCTAGCCCGAAGAGCATTCCTCCGACATGAATCCGAAGTGTAGCAGATGTGATCGAATCGTTTACCCCACGGAAAGACTGAATTGTCTGGACAAGTGCTGGCATAGAGGATGCTTCAGCTGCGAGGTCTGCAAGATGACTCTAAACATGAAGAATTACAAAGGATTTGAAAAGAGACCATACTGCAATGCACAC-TACCCCAAGACACATTTCACTGCTGTGGCCGACACTCCAGAGAACCTCCGACTCAAAAAGCAGAGCCAGATCCAGAGCCAAATTTACTACAAGGAGGACTTTGAGAAGAATAAAGGGAAAGCCACCCA-GGGCGTGGACACACCGGGGGTCCTGAGATTGAAGAAGTCGCAGCAACAAATCAGCGATATTAAGTACCATGAGGATATGAGCAAGAGGATGGTGGACGATACTCCACCACCAGGCATCCACAACCAAGCTGATTTTCAGCCACCTGC]
[+] EMBL CA590842 [GGCGGCTACAACAATAACCCTCTCCTGGATTTGCTCCACACATGCCACTGGGCACGATCGGCGACCGTAGCTAGTGCGTGTGCGCGTGTTTTTATTTCCGAAGTGGGCAAAACTGCGACCAGAACGTCCAACGGTTTC CCCGCAAGCTAGCCCGAAGAGCATTCCTCCGACATGAATCCGAAGTGTAGCAGATGTGATCGAATCGTTTACCCCACGGAAAGACTGAATTGTCTGGACAAGTGCTGGCATAGAGGATGCTTCAGCTGCGAGGTCTGCAAGATGACTCTAAACATGAAGAATTACAAAGGATTTGAAAAGAGACCATACTGCAATGCACAC TACCCCAAGACACATTTCACTGCTGTGGCCGACACTCCAGAGAACCTCCGACTCAAAAAGCAGAGCCAGATCCAGAGCCAAATTTACTACAAGGAGGACTTTGAG ]
[+] EMBL CA589138 [ GCGACCGTAGCTAGTGCGTGTGCGCGTGTTTTTATTTCCGAAGTGGGCAAAACTGCGACCAGAACGTCCAACGGTTTC CCCGCAAGCTAGCCCGAAGAGCATTCCTCCGACATGAATCCGAAGTGTAGCAGATGTGATCGAATCGTTTACCCCACGGAAAGACTGAATTGTCTGGACTATTGCTGGCATAGAGGATGCTTCAGCTGCGAGGTCTGCAAGATGACTCTAAACATGAAGAATTACAAAGGATTTGAAAAGAGACCATACTGCAATGCACAC TACCCCAAGACACATTTCACTGCTGTGGCCGACACTCCAGAGAACCTCCGACTCAAAAAGCAGAGCCAGATCCAGAGCCAAATTTACTACAAGGAGGACTTTGAGAAGAATAAAGGGAAAGCCACCCA GGTCGTGGACACACCGGAGTTCCTGAGATTGAAGAAGTCGCAGCAACAAATCAGCGATATTAAGTACCATGAGGATATGAGCAAGAGGATGGTGGACGATACTCCACCACCAGGCATCCACAACCAAGCTGATTTTCAGCCACCTGC]
[+] EMBL FR0062499 [ TGGGCAATTTTGCGACCAGAACGTCCAACGGTTTCGGGCGGGAGCTAGCCCGAAGAGCATTCCTCCCACATGAATCCGAAGTGTAGCAGATGTGATCGAATCGTTTACCCCACGGAAAGACTGAATTGTCTGGACAAGTGCTGGCATAGAGGATGCTTCAGCTGCGAGGGCTGCAAGATGACTCTAAACATGAAGAATTACAAAGGATTTGAAAAGAGACCATACTGCAATGCACACTTACCCCAAGACACATTTCACTGTTGTGGCCGACACTCCAGAGAACTTCCGACTCAAAAAGCAGA CCAGATCCA ]
[+] EMBL FR0062061 [ GACCAGAACGTCCAGGGGTTTC CCCGCAAGCTAGCCCGAAGAGCATTCCTCCGACATGAATCCGAAGTGTAGCAGATGTGATCGAATCGTTTACCCCACGGAAAGACTGAATTGTCTGGACAAGTGCTGGCATAGAGGATGCTTCAGCTGCGAGGTCTGCAAGATGACTCTAAACATGAAGAATTACAAAGGATTTGAAAAGAGACCATACTGCAATGCACAC TACCCCAAGACACATTTCACTGCTGTGGCCGACACTCCAGAGAACCTCCGACTCAAAAAGCAGAGCCAGATCCAGAGCCAAATTTACTACAGGGAGGACTTTGAGAAGAATAAAGGGAAAGCCACCCAGGGGCGTGGACACACCGGGAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2446#0 CTAAAGAACAGAGAGGGAGACCTCTGGTGGATAGAAACGAAACTGCAGGGTGGCCAAGTT 60
consensus_2446#1 ------------------------------------------------------------
consensus_2446#0 CTTGTTTGAAGTAGTTTCTTGCAGATATTTAACTCTCAATTGCTTCTAATTGTTGCTCAC 120
consensus_2446#1 -------------GGCGGCTACAACAA--TAACCCTCTCCTGGATTTGCTCCACACATGC 45
* * ** * **** *** ** * * * * *
consensus_2446#0 AGATTAAGTACCATGAG-GATATGAGCAAGAGGATGGTGGACGATACTCCACCACC-AGG 178
consensus_2446#1 C-ACTGGGCACGATCGGCGACCGTAGCTAGTGCGTG-TGCGCGTGTTTTTATTTCCGAAG 103
* * * ** ** * ** *** ** * ** ** ** * * ** * *
consensus_2446#0 CATCCACAACCAAGCTGATTTTCAGCCACCTGCCAGTTCCCAGACCTACCAATATGATCC 238
consensus_2446#1 TGGGCAAAACTGCGACCAGAA-CGTCCAACGGTTTCCCCGCAAGCTAGCCCGAAGAGCAT 162
** *** * * * *** * * * ** * ** *
consensus_2446#0 TGCTCCTGCACCAGTGCCCCAGCCATATGAGCCTGCTCCTGCACCAGT-GCCCCAGGCCG 297
consensus_2446#1 TCCTCCGACATGAAT--CCGAAGTGTAGCAGA-TGTGATCGAATCGTTTACCCCACGGAA 219
* **** ** * * ** * ** ** ** * * * * ***** *
consensus_2446#0 GCGCCCCCCCTCCTTCCTCCACCGGGAAACGCTGCCGGGCCATGTACGACTACACCGCCG 357
consensus_2446#1 AGAC----------TGAATTGTCTGGACAAG-TGCTGG--CATAGAGGA-TGCTTCAGCT 265
* * * *** * * *** ** *** * ** * * * *
consensus_2446#0 CCGACGACGACGAGGTGTCCTT---CTTGGACGGGGACGT-GATTGTGGATGTGCACCTG 413
consensus_2446#1 GCGAGGTCTGCAAGATGACTCTAAACATGAAGAATTACAAAGGATTTGAAAAGAGACCAT 325
*** * * * ** ** * * * ** * ** * * ** * ***
consensus_2446#0 ATTGACGAGGGCTGGATGTTCGGCCGCGTGGAGCGTACG-GGCCAGCAGGGCATGCTGCC 472
consensus_2446#1 ACTGCAATGCACACTACCCCAAGACACATTTCACTGCTGTGGCCGACACTCCAGAGAACC 385
* ** * * * * * * * * * **** ** ** **
consensus_2446#0 TGCTAATTACGTGAATAACATCTGAGTGAGAGAGAGAGAAAGAAAAGGGGGAAGGGAGGA 532
consensus_2446#1 T-CCGACTCAAAAAGCAGAGCCAGATCCAGAGCCAAATTTACTACAAGGAGGACTTTGAG 444
* * * * * * * ** **** * * * * * ** * * *
consensus_2446#0 GGAGGGAAAGAAAGAAAAGCCCAGTGCCATCTCATCTTAATGCCGCTTTATCGATTTTAC 592
consensus_2446#1 AAGAATAAAGGGAAAGCCACCCAGGGCGTGGACACACCGGGGGTCCTGAGATTGAAGAAG 504
**** * * ***** ** ** * ** *
consensus_2446#0 TCCTGTTCCCTAATTTGTCCTGTGATATCCTGACACCACCACCTGTTCACTTTCGCGATT 652
consensus_2446#1 TCGCAGCAACAAATCAGCGATATTAAGTAC---CATGAGGATATGAGCAAGAGGATGGTG 561
** * *** * * * * * * ** * * ** ** * *
consensus_2446#0 GCTGTGAAGCTCCACC-TCAGACACCCTCCACTCGTCCGTCTGTCTGTCTGTCTGTCTGT 711
consensus_2446#1 G--ACGATACTCCACCACCAGGCATCCACAACCAAGCTGATTTTCAG-CCACCTGC---- 614
* ** ******* *** ** ** * ** * * * ** * * ***
consensus_2446#0 CTGTCTGTCTGTCTGTCAGTAAAAAAGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGT 771
consensus_2446#1 ------------------------------------------------------------
consensus_2446#0 CCGCCTCCCTTCCTGCCATCTGTCCGTGCCGACGCCCGTCGTCCTTTTTGTTTCTCCCCA 831
consensus_2446#1 ------------------------------------------------------------
consensus_2446#0 TCCTGGCTCGGTTTTAATCGAATTGGAAAGCAAATTTCAGCTCAGCATGTCCAGACTCCC 891
consensus_2446#1 ------------------------------------------------------------
consensus_2446#0 CCATCATGACACAAGCCTCCATCCCGGCCGAGGCACGTAACCAGGGTGATATAACATCGC 951
consensus_2446#1 ------------------------------------------------------------
consensus_2446#0 GCAAAAT 958
consensus_2446#1 -------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |