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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2461#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 754 fasta sequence
[CGCCATCTCCGCACAGTCACCTCGCACCAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACAGC-AAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTGGGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTTCCGAAATGGCCTCAAACTCA-TGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCAAACTGGTGTCCATCGGTGCTGAGGAAATTGTTGATGGTAATGTGAAGATGACTCTTGGCATGATTTGGACCATCATTCTCCGCTTTGCCATCCAGGACATCTCTGTGGAAGAGACCTCTGCTAAGGAGGGTCTGTTGCTGTGGTGTCAGAGGAAGACTGCCCCCTACAGGAACGTCAATGTGCAGAACTTCCACATCAGCTGGAAGGACGGCCTGGCTCTGTGT]
[+] EMBL BU804615 [CGCCATCTCCGCACAGTCACCTCGCACCAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACAGC AAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTGGGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTTCCGAAATGGCCTCAAACTCA TGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCAAACTGGTGTCCATCGGTGCTGAGGAAATTGTTGATGGTAATGTGAAGATGACTCTTGGCATGATTTGGAC ]
[+] EMBL BU804884 [ TCCGCACAGTCACCTCGCACCAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACAGC AAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTGGGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAANAGGATTTCCGAAATGGCCTCAAACTCA TGCTGNTG ]
[+] EMBL FR0063785 [ TCTGCAACTCTTAACTGTCTTCCCCCGACAGCTATGACCCCTCACGGAGGTTCTTGTGCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTG AGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTGGGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTTCCGAAATGGCCTCAAACTCATTGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGAT ]
[+] EMBL BU805658 [ AAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACCATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTGGGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTTCCGAAATGGCCTCAAACTCA TGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCAAACTGGTGTCCATCGGTGCTGAGGAAATTGTTGATGGTAATGTGAAGATGACTCTTGGCATGATTTGGACCATCATTCTCCGCTTTGCCATCCAGGACATCTCTGTGGAAGAGACCTCTGCTAAGGAGGGTCTGTTGCTGTGGTGTCAGAGGAAGACTGCCCCCTACAGGAACGTCAATGTGCAGAACTTCCACATCAGCTGGAAGGACGGCCTGGCTCTGTGT]
consensusID : consensus_2461#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[CAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACCGCAAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGGTGGGATCCAGCCTGGGAGAAGCAGCAGAGGGAGACCTTTCAAAGCTTGGTTTACCTCCCCACTGGAGGAAACCTGGGAAGCCAAATGTAAAACATTGTAAAAGGAATTTCGGAAATGGGCTCCAAACCCATTGGGTGTGGTTGGAGGGGCATCTCTCGGGGAAACGAATTTCCCAAAAA]
[+] EMBL BU805669 [CAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACCGCAAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGGTGGGATCCAGCCTGGGAGAAGCAGCAGAGGGAGACCTTTCAAAGCTTGGTTTACCTCCCCACTGGAGGAAACCTGGGAAGCCAAATGTAAAACATTGTAAAAGGAATTTCGGAAATGGGCTCCAAACCCATTGGGTGTGGTTGGAGGGGCATCTCTCGGGGAAACGAATTTCCCAAAAA]
consensusID : consensus_2461#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence
[GCAGCTGAAACGAGTTACTTTGCAGTCAATCTGCAAAGTTTTTAGTGTCTTTTGGCGCACAATGTCTTCTGCCTAGACAGACTGAGGGACCACAACAGATGGCTACATAGAGAGGGAGAGATGGCAAGGCTGGTAGATATACACCCCGGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTCCCGAAATGGCCTCAAACTCATGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCATACTGGGGGCCCA]
[+] EMBL FR0060161 [GCAGCTGAAACGAGTTACTTTGCAGTCAATCTGCAAAGTTTTTAGTGTCTTTTGGCGCACAATGTCTTCTGCCTAGACAGACTGAGGGACCACAACAGATGGCTACATAGAGAGGGAGAGATGGCAAGGCTGGTAGATATACACCCCGGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTCCCGAAATGGCCTCAAACTCATGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCATACTGGGGGCCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2461#0 CGCCATCTCCGCACAGTCACCTCGCACCAGTGGAGTGCTCTCTGCAACTCTTAACTGTCT 60
consensus_2461#1 ---------------------------CAGTGGAGTGCTCTCTGCAACTCTTAACTGTCT 33
consensus_2461#2 -------------------------------------------GCAGCTG--AAACGAGT 15
*** ** ** * *
consensus_2461#0 TCCCCCGACAGCAAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTA 120
consensus_2461#1 TCCCCCGACCGCAAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTA 93
consensus_2461#2 TACTTTGCAGTCAA------TCTGCAAAGTTTTTAGTGTCTTTTGGCG-CACAATGTCTT 68
* * * *** ** * *** ** ** *** * ** ***
consensus_2461#0 AAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGG 180
consensus_2461#1 AAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGG 153
consensus_2461#2 CTGCCTAGACAGACTGAGGGACCACAACAGATGGCTACATAGAGA----GGGAGAGATGG 124
* ** * * * * ** ** ** ** * * ** ***
consensus_2461#0 -AACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATG 239
consensus_2461#1 -AACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATG 212
consensus_2461#2 CAAGGCTGGTAGATAT--ACACCCCGGACCTTCACAGC--CTGGTGTA-ACTCCCACTTG 179
** * ** ** * * * **** ***** ** * * * * * **
consensus_2461#0 AAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGG-ATCCAGCC 298
consensus_2461#1 AAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGGTGGGATCCAGCC 272
consensus_2461#2 AGGAAAGCTG--GGACGCAGATTGAAAACATTGAAGAGGATTCCCGAAATGGCCTCAAAC 237
* *** * ** ** ** ** ** *** * * ** *
consensus_2461#0 TGGGAGAAGCAGCAGAGGAAGACCTT-CACAGCCTGGTGTAACTCCC-ACTTGAGGAAAG 356
consensus_2461#1 TGGGAGAAGCAGCAGAGGGAGACCTTTCAAAGCTTGGTTTACCTCCCCACTGGAGGAAAC 332
consensus_2461#2 TC----ATGCTGCTGCTGGAGGTCATCTCAGG--TGAACGACTTCCCAAACCCGACAAAG 291
* * ** ** * * ** * * * ** * **** * ***
consensus_2461#0 CTGGGACGCAGATTG-AAAACATTG--AAGAGGATTTCCGAAATGGCCTC-AAACTCAT- 411
consensus_2461#1 CTGGGAAGCCAAATGTAAAACATTGTAAAAGGAATTTCGGAAATGGGCTCCAAACCCATT 392
consensus_2461#2 GCAAGATGC-GTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTT------CATC 344
** ** * * ** ** * ** * * *** ** ***
consensus_2461#0 -GCTGCTGCTGGAGGT---CATCTCAGGTGAACGA-CTTCCCAAACCCGACAAAGGCAAG 466
consensus_2461#1 GGGTGTGGTTGGAGGGGCATCTCTCGGGGAAACGAATTTCCCAAAAA------------- 439
consensus_2461#2 ---TGCAGCAAGGGAG---TCATACTGGGGGCCCA------------------------- 373
** * * * * ** * *
consensus_2461#0 ATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGA 526
consensus_2461#1 ------------------------------------------------------------
consensus_2461#2 ------------------------------------------------------------
consensus_2461#0 GTCAAACTGGTGTCCATCGGTGCTGAGGAAATTGTTGATGGTAATGTGAAGATGACTCTT 586
consensus_2461#1 ------------------------------------------------------------
consensus_2461#2 ------------------------------------------------------------
consensus_2461#0 GGCATGATTTGGACCATCATTCTCCGCTTTGCCATCCAGGACATCTCTGTGGAAGAGACC 646
consensus_2461#1 ------------------------------------------------------------
consensus_2461#2 ------------------------------------------------------------
consensus_2461#0 TCTGCTAAGGAGGGTCTGTTGCTGTGGTGTCAGAGGAAGACTGCCCCCTACAGGAACGTC 706
consensus_2461#1 ------------------------------------------------------------
consensus_2461#2 ------------------------------------------------------------
consensus_2461#0 AATGTGCAGAACTTCCACATCAGCTGGAAGGACGGCCTGGCTCTGTGT 754
consensus_2461#1 ------------------------------------------------
consensus_2461#2 ------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |