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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 905 fasta sequence
[TTATGCTCCCCCACTTGGGCCAACTTGAACTAACATCATATGCAGATAAGATCTGGTGGGCAGGGTGGATCCTAGCATTCCTAGTTAAAATACCCCTTTACGGAGTTCACCTTTGACTACCCAAAGCTCACGTAGAAGCCCCCATTGCAGGATCTATAGTGCTAGCCGCTGTACTACTAAAACTAGGGGGCTACGGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCGATTCATTGTCTTAGCCCTCTGAGGAGGGATTATAACTGGGTCCATCTGCATAGGGCAAACAGACCTAAAATCATTAATTGCCTACTCATGAGTCAGCCACATAGGACTGGTAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAATTGCCCACGGATTAACATCATCCGCCTTATTCTGTCTAGCTAATACTAGCTACGAGCGCACACACAGCCGAACTATACTACTTGCTCGAGGTATGCAAATAATCCTCCCTCTCATAGCAGCCTGATGATTCATCGCAAGCCTCGCCAATTTAGCATTACCACCCCTCCCCAACTTAATAGGAGAACTAATGATTATTACCTCCCTATTCAATTGATCCCCGTGAACAATTGGCCTTACTGGACTAGGTACACTTATTACTGCCGGCTACTCGCTCTATATATTCCTCATAACCCAACGAGGGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCCTCACACACCCGAGAGCACCTTCTTATCGCCCTCCACCTCCTCCCACTAATCCTAATTATTACAAAACCAGAACTAATCTGAGGGTGAACTGCCTAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCCGGACCCCAGTTTTG]
[+] EMBL FR0062851 [TTATGCTCCCCCACTTGGGCCAACTTGAACTAACATCATATGCAGATAAGATCTGGTGGGCAGGGTGGATCCTAGCATTCCTAGTTAAAATACCCCTTTACGGAGTTCACCTTTGACTACCCAAAGCTCACGTAGAAGCCCCCATTGCAGGATCTATAGTGCTAGCCGCTGTACTACTAAAACTAGGGGGCTACGGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCGATTCATTGTCTTAGCCCTCTGAGGAGGGATTATAACTGGGTCCATCTGCATAGCGCAAACAGACCTAAAATCATTAATTGCCTACTCATGAGTCAG ]
[+] EMBL BU804550 [ AATACCCCTTTACGGAGTTCACCTTTGACTACCCAAAGCTCACGTAGAAGCCCCCATTGCAGGATCTATAGTGCTAGCCGCTGTACTACTAAAACTAGGGGGCTACGGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCCATTCATTGTCTTAGCCCTCTGAGGAGTGATTATAACTGGTTCCATCTGCATACGTCAAACAGACCTAAAATCATTAATTGCCTACTCATCAGTCAGCCACATAGGACTGGTAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAATTGCCCACGGATTAACATCATCCGCCTTATTCTGTCTAGCTAATACTAGCTACGAGCGCACACACAGCCGAACTATACTACTTGCTCGAGGTATGCAAATAATCCTCCCTCTCATAGCAGCCTGATGATTCATCGCAAGCCTCGCCAATTTAGCATTACCACCCCTCCCCAACTTAATAGGAGAACTAATGATTATTACCTCCCTATTCAATTGATCCCCGTGAACAATTGGCCTTACTGGACTAGGTACACTTATTACTGCCGGCTACTCGCTCTATATATTCCTCATAACCCAACGAGGGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCC ]
[+] EMBL FR0056720 [ CCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAATTGCCCACGGATTAACATCATCCGCCTTATTCTGTCTAGCTAATACTAGCTGCGAGCGCACACACAGACGATCCATACTACTTGCTCGAGGTATGCACATAATCCTCCCTCTCATATGAGCCTGATGATTCATCGCAGGCCTCGCCAATTTAGCAGTACCACCCCTCGCCAACTTAATAAGAGAACTAATGGTTAGTACCTCCCTATTCAATTGAGTCCCGTGAACAATTGGGCTTACTGGACTAGGTACACTTATTACTGCCGGCGATTCGCTCTATATATTCCTCATAATCCAACGAGGGCTGGCCCCCAGC ]
[+] EMBL CA333433 [ GCTAATACTAGCTACGAGCGCACACACAGCCGAACTATACTACTTGCTCGAGGTATGCAAATAATCCTCCCTCTCATAGCAGCCTGATGATTCATCGCAAGCCTCGCCAATTTAGCATTACCACCCCTCCCCAACTTAATAGGAGAACTAATGATTATTACCTCCCTATTCAATTGATCCCCGTGAACAATTGGCCTTACTGGACTAGGCACACTTATTACTGCCGGCTACTCGCTCTATATATTCCTCATAACCCAACGAGGGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCCTCACACACCCGAGAGCACCTTCTTATCGCCCTCCACCTCCTCCCACTAATCCTAATTATTACAAAACCAGAACTAATCTGAGGGTGAACTGC ]
[+] EMBL FR0058010 [ TAACCCAACGAGGGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCCTCACACACCCGAGAGCACCTTCTTATCGCCCTCCACCTCCTCCCACTAATCCTAATTATTACAAAACCAGAACTAATCTGAGGGTGAACTGCCTAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCCGGACCCCAGTTTTG]
consensusID : consensus_2462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence
[GGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCCATTCATTGTCTTAGCCCTCTGAGGAGTGATTATAACTGGTTCCATCTGCATACGTCAAACAGACCTAAAATCATTAATTGCCTACTCATCAGTCAGCCACATAGGACTGGTAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAAATAACAACAAAAAAAACCCCAAGGGGGGGCCCGTTCCCAAGTTTTGGG]
[+] EMBL FR0057740 [GGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCCATTCATTGTCTTAGCCCTCTGAGGAGTGATTATAACTGGTTCCATCTGCATACGTCAAACAGACCTAAAATCATTAATTGCCTACTCATCAGTCAGCCACATAGGACTGGTAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAAATAACAACAAAAAAAACCCCAAGGGGGGGCCCGTTCCCAAGTTTTGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2462#0 TTATGCTCCCCCACTTGGGCCAACTTGAACTAACATCATATGCAGATAAGATCTGGTGGG 60
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 CAGGGTGGATCCTAGCATTCCTAGTTAAAATACCCCTTTACGGAGTTCACCTTTGACTAC 120
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 CCAAAGCTCACGTAGAAGCCCCCATTGCAGGATCTATAGTGCTAGCCGCTGTACTACTAA 180
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 AACTAGGGGGCTACGGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAAC 240
consensus_2462#1 --------------GGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAAC 46
**********************************************
consensus_2462#0 TCAGCTACCGATTCATTGTCTTAGCCCTCTGAGGAGGGATTATAACTGGGTCCATCTGCA 300
consensus_2462#1 TCAGCTACCCATTCATTGTCTTAGCCCTCTGAGGAGTGATTATAACTGGTTCCATCTGCA 106
********* ************************** ************ **********
consensus_2462#0 TAGGGCAAACAGACCTAAAATCATTAATTGCCTACTCATGAGTCAGCCACATAGGACTGG 360
consensus_2462#1 TACGTCAAACAGACCTAAAATCATTAATTGCCTACTCATCAGTCAGCCACATAGGACTGG 166
** * ********************************** ********************
consensus_2462#0 TAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAA 420
consensus_2462#1 TAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAA 226
************************************************************
consensus_2462#0 TTGCCCACGGATTAACATCATCCGCCTTATTCTGTCTAGCTAATACTAGCTACGAGCGCA 480
consensus_2462#1 ATAACAACAAAA-AAAACCCCAAGGGGGGGCCCGTTCC-CAAGTTTTGGG---------- 274
* * ** * ** * * * * ** * * * * *
consensus_2462#0 CACACAGCCGAACTATACTACTTGCTCGAGGTATGCAAATAATCCTCCCTCTCATAGCAG 540
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 CCTGATGATTCATCGCAAGCCTCGCCAATTTAGCATTACCACCCCTCCCCAACTTAATAG 600
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 GAGAACTAATGATTATTACCTCCCTATTCAATTGATCCCCGTGAACAATTGGCCTTACTG 660
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 GACTAGGTACACTTATTACTGCCGGCTACTCGCTCTATATATTCCTCATAACCCAACGAG 720
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 GGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCCTCACACACCCGAGAGCACCTTCTTA 780
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 TCGCCCTCCACCTCCTCCCACTAATCCTAATTATTACAAAACCAGAACTAATCTGAGGGT 840
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 GAACTGCCTAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCCGGACCCCAG 900
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 TTTTG 905
consensus_2462#1 -----
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |