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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence
[CCCTGCAGTGTGTGCGTGCTGGCGCAAAGCGCGGCCTTCAGCTCTGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGACCCATCGACTGCAGATGGCGGAGACGGTGAAGTACGTGGACAACGAGCACAAGAGCATCTTCCTGAAGCTGCTGAACGAGCAGCGTCTGGAGGGCGAGCACTGCGACATCGCCGTGGNCGTGGAGGACGTCAAGTTCCGCGCCCACCGCTGCGTGCTTCGCCGCCTGCTCCAACTACTTCAAGAAGCTCTTCAAGAAGCACGAGGCCGACAACTCGTGCGTGATCGAGATCGACTTCATCCGCTCGGACATTTTCGAGGAGGTGCTGAACTACATGTACACGGNCAAAATCTCAGTCAAGAAGAAAGACGTCAACCTGATGATGTCGTCGGGACAGATCCTCGGCATCCGCTTCCTCGACAAGCTCTGCTCGCAGAAACGGGACGTTTCGCCGGAGGACAAAGACAAGTTTCCTTACGACATCGTCAAGATGGCGCTGCCGCCGGAAGCGCAGCTGGCGGCCGACGCAGAGGTGCTCGGCGATCAC]
[+] EMBL CA844659 [CCCTGCAGTGTGTGCGTGCTGGCGCAAAGCGCGGCCTTCAGCTCTGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGACCCATCGACTGCAGATGGCGGAGACGGTGAAGTACGTGGACAACGAGCACAAGAGCATCTTCCTGAAGCTGCTGAACGAGCAGCGTCTGGAGGGCGAGCACTGCGACATCGCCGTGGTCGTGGAGGACGTCAAGTTCCGCGCCCACCGCTGCGTGC TCGCCGCCTGCTCCAACTACTTCAAGAAGCTCTTCAAGAAGCACGAGGTCGACAACTCGTCCGTGATCGAGATCGACTTCATCCGCTCGGACATTTTCGAGGAGGTGCTGAACTACATGTACACGGNCAAAATCTCAGTCAAGAAGAAAGACGTCAACCTGATGATGTCGTCGGGACAGATCCTCGGCATCCGCTTCCTCGACAAGCTCTGCTCGCAGAAACGGGACGTTTCGCCGGAGGACAAAGACAAGTTTCCTTACGACATCGTCAAGATGGCGCTGCCGCCGGAAGCGCAGCTGGCGGCCGACGCAGAGGTGCTCGGCGATCAC]
[+] EMBL BU806744 [ AGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGACCCATCGACTGCAGATGGCGGAGACGGTGAAGTACGTGGACAACGAGCACAAGAGCATCTTCCTGAAGCTGCTGAACGAGCAGCGTCTGGAGGGCGAGCACTGCGACATCGCCGTGGNCGTGGAGGACGTCAAGTTCCGCGCCCACCGCTGCGTGCTTTTTTTTTTGCTCCAACTACTTCAAGAAGCTCTTCAAGAAGTACGAGGCCGACAACTCGTGCGTGATCGAGATCGACTTCATCCGCTCGG ]
consensusID : consensus_2467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 569 fasta sequence
[CTTCCGCTCTGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGGTAAGACCGCGCACCTCCGGCGCCGCGCTCCCCTCGACGCGAGCTCGGGCCGACGTTTCCGCGGGGATGCCTGCGCGCTCTCGAGCCGCTCATGGCCGCACGAGCCCTTCTCGCTCGTGTCGCCGAGGCCGCGGCGCCGCCGCCGCTCGCGTGCCTGCGTGTGTCCCGGGGACGGCGGTGCTGAGCCCACCGACGGCGATGGCGGGCATTTGGTGGCGAGCAGTTTGAGGACGAGCGCCATTTTAGCGGAGCGGAAGGCCAGATTCCGCCATTTACACGAACATTGTTGCCCCCGAACCTACGGTTCTGCCCCCGCGTTGCACCCCTGACACTTGTCACGCGCGAAAAAAAAAAAGCCCACAGGGCGACGATGACCGACGAAAAAGTGACGGAAGTTCGGGAGAAAGCACGAACTAATGTGTGATTAGCTAACGCGAGCTAACGCTGGCCTGAGT]
[+] EMBL BU807723 [CTTCCGCTCTGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGGTAAGACCGCGCACCTCCGGCGCCGCGCTCCCCTCGACGCGAGCTCGGGCCGACGTTTCCGCGGGGATGCCTGCGCGCTCTCGAGCCGCTCATGGCCGCACGAGCCCTTCTCGCTCGTGTCGCCGAGGCCGCGGCGCCGCCGCCGCTCGCGTGCCTGCGTGTGTCCCGGGGACGGCGGTGCTGAGCCCACCGACGGCGATGGCGGGCATTTGGTGGCGAGCAGTTTGAGGACGAGCGCCATTTTAGCGGAGCGGAAGGCCAGATTCCGCCATTTACACGAACATTGTTGCCCCCGAACCTACGGTTCTGCCCCCGCGTTGCACCCCTGACACTTGTCACGCGCGAAAAAAAAAAAGCCCACAGGGCGACGATGACCGACGAAAAAGTGACGGAAGTTCGGGAGAAAGCACGAACTAATGTGTGATTAGCTAACGCGAGCTAACGCTGGCCTGAGT]
[+] EMBL CA591383 [CTTCCGCTCTGTGCTCGTGCTCAGCTACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGGTAAGACCGCGCACCTCCGGCGCCGCGCTCCCCTCGACGCGAGCTCGGGCCGACGTTTCCGCGGGGATGCCTGCGCGCTCTCGAGCCGCTCATGGCCGCACCAGCCCTTCTCGCTCGTGTCGCCGAGGCCGCGGCGCCGCCGCCGCTCGCGTGCCTGCGTGTGTCCCGGGGACGGCGGTGCTGAGCCCACCGACGGCGATGGCGGGCATTTGGTGGCGAGCAGTTTGAGGACGAGCGCCATTTTAGCGGAGCGGAAGGCCAGATTCCGCCATTTACACGAACATTGTTGCCCCCGAACCTACGGTTCTGCCCCCGCGTTGCACCCCTGACACTTGTCACGCGCG AAAAAAAAAAGCCCACAGGGCGACGATGACCGACGAAAAAGTGACGGAAGTTCGGGAGAAAGCACGAACTAATGTGTGATTAGCTAACGCGAGCTAACGC ]
consensusID : consensus_2467#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence
[AAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGCTGGTGGATCCGGACCGTCTGGAGGGTAAATGTGGAGTTCGGCCGCCGCCGCCAGCCCCGCTGCCTCCCCTCCCGAACCCGAACATCAGCGTGGACTCGCAACCGGACGGAACATGTTCCGAAGAACCGCGGCGTTTCGGCGCCTTGCTAACAGCTAACGGGTCCGTGCCTCGCCAGCTAGCGCCACAGCCCGCGTGCACACGCGCGCATGTCCGCGGCAGAGGTGCATGAACTGTTGGGTGGGTTTACGGAAGAATCCGGTGTCATTCTAATAAAGTGTCCTCGGCCCGGAAACTTTGTGGCGCCTTTTTAAACAGTTCTTATTCACCTCAGCTTCACACCTTTGCACTAACCAGTGGAAACCACGTGACGACCCCGCTCGACCAAAGTAACCACAAAGTTAAATAAATGGTGTCGCCAGTAGCTCTGTGTCGTTCTGCGTAGACCCATCGAC]
[+] EMBL CA590564 [AAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGCTGGTGGATCCGGACCGTCTGGAGGGTAAATGTGGAGTTCGGCCGCCGCCGCCAGCCCCGCTGCCTCCCCTCCCGAACCCGAACATCAGCGTGGACTCGCAACCGGACGGAACATGTTCCGAAGAACCGCGGCGTTTCGGCGCCTTGCTAACAGCTAACGGGTCCGTGCCTCGCCAGCTAGCGCCACAGCCCGCGTGCACACGCGCGCATGTCCGCGGCAGAGGTGCATGAACTGTTGGGTGGGTTTACGGAAGAATCCGGTGTCATTCTAATAAAGTGTCCTCGGCCCGGAAACTTTGTGGCGCCTTTTTAAACAGTTCTTATTCACCTCAGCTTCACACCTTTGCACTAACCAGTGGAAACCACGTGACGACCCCGCTCGACCAAAGTAACCACAAAGTTAAATAAATGGTGTCGCCAGTAGCTCTGTGTCGTTCTGCGTAGACCCATCGAC]
consensusID : consensus_2467#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence
[CCCGCTGCCTGCGTGCCCCTGCAGTGTGTGCGTGCTGGCGCAAAGCGCGGCCTTCCGCTCTGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGACCCATCGACTGCAGATGGCGGAGACGGTGAAGTACGTGGACAACGAGCACAAGAGCATCTTCCTGAAGCTGCTGAACGAGCAGNNCGTCTGGAGGGCGAGCACTGCGACATCGCCGTGGTCGTGGAGGACGTCAAGTTCCGCGCCCACCGCTGCGTGCTCGCCGCCTGCTCCAACTACTTCAAGAAGCTCTTCAAGAAGCACGAGGTGCTCGCCTGCGGGATGGCTGCCCACCTGCGGGGACTCTGCCCGCCCACCTCACCTGTCTCGCCGTTGCCTCCTCAGGTCGACAACTCGTCCGTGATCGAGATCGACTTCATCCGCTCGG]
[+] EMBL CA590527 [CCCGCTGCCTGCGTGCCCCTGCAGTGTGTGCGTGCTGGCGCAAAGCGCGGCCTTCCGCTCTGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGACCCATCGACTGCAGATGGCGGAGACGGTGAAGTACGTGGACAACGAGCACAAGAGCATCTTCCTGAAGCTGCTGAACGAGCAGNNCGTCTGGAGGGCGAGCACTGCGACATCGCCGTGGTCGTGGAGGACGTCAAGTTCCGCGCCCACCGCTGCGTGCTCGCCGCCTGCTCCAACTACTTCAAGAAGCTCTTCAAGAAGCACGAGGTGCTCGCCTGCGGGATGGCTGCCCACCTGCGGGGACTCTGCCCGCCCACCTCACCTGTCTCGCCGTTGCCTCCTCAGGTCGACAACTCGTCCGTGATCGAGATCGACTTCATCCGCTCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2467#0 ----------------CCCTGCAGTGTGTGCGTGCTGGCGCAAAGCGCGGCCTTCAGCTC 44
consensus_2467#3 CCCGCTGCCTGCGTGCCCCTGCAGTGTGTGCGTGCTGGCGCAAAGCGCGGCCTTCCGCTC 60
consensus_2467#1 ---------------------------------------------------CTTCCGCTC 9
consensus_2467#2 ------------------------------------------------------------
consensus_2467#0 TGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGC 104
consensus_2467#3 TGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGC 120
consensus_2467#1 TGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGC 69
consensus_2467#2 -------------------------------------AAGTGGTTCCCGGCTCCCCGCGC 23
***********************
consensus_2467#0 GCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGACCCATCGACTGCAG 164
consensus_2467#3 GCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGACCCATCGACTGCAG 180
consensus_2467#1 GCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGGTAA---GACCGCGC 126
consensus_2467#2 GCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGCTGG--TGGATCCGG 81
********************************************* * *
consensus_2467#0 ATGGCGGAGACGGTGAAGTACGTGGACAACGAGCACAAG--AGCATCTTCCTGAAGCTGC 222
consensus_2467#3 ATGGCGGAGACGGTGAAGTACGTGGACAACGAGCACAAG--AGCATCTTCCTGAAGCTGC 238
consensus_2467#1 ACCTCCGGCGCCGCGCT-CCCCTCGACG-CGAGCTCGGGCCGACGTTTCCGCGGGGATGC 184
consensus_2467#2 ACCGTCTGGAGGGTAAA---TGTGGAGTTCGGCCGCCGCC-GCCAGCCCCGCTGC-CTCC 136
* * * ** ** * * * * * *
consensus_2467#0 -TGAACGAGCA-GCG--TCTG-GAGGGCGAGCACTGCGACATCGCCGTGGNCGTGGAGGA 277
consensus_2467#3 -TGAACGAGCA-GNNCGTCTG-GAGGGCGAGCACTGCGACATCGCCGTGGTCGTGGAGGA 295
consensus_2467#1 CTGCGCGCTCTCGAGCCGCTC-ATGGCCGCACGAGCCCTTCTCGCTCGTGTCGCCGAGGC 243
consensus_2467#2 CCTCCCGAACCCGAACATCAGCGTGGACTCGCAACCGGACGGAACATGTTCCGAAGAA-C 195
** * * * ** * * * ** **
consensus_2467#0 CGTCAAGTTCCGCGCCCACCGC-TGCGTGCTTCGCCGCCTGCTCCAACTACTTCAAGAAG 336
consensus_2467#3 CGTCAAGTTCCGCGCCCACCGC-TGCGTGCT-CGCCGCCTGCTCCAACTACTTCAAGAAG 353
consensus_2467#1 CGCGGCGCCGC-CGCCGCTCGCGTGCCTGCGTGTGTCCCGGGGACGGCGGTGCTGAGCCC 302
consensus_2467#2 CGCGGCGTTTC-GGCGCCTTGC-TAACAGCTAACGGGTCCGTGCCT----CGCCAGCTAG 249
** * * ** ** * ** * * *
consensus_2467#0 CTCTTCAAGAAGCACGAGGCCGACAACTCGTGCGTGATCGAGATCGACTTCATCCGCTCG 396
consensus_2467#3 CTCTTCAAGAAGCACGAGGTGCTCGCCT---GCGGGATGGCTGCC-----CACCTGCGGG 405
consensus_2467#1 ACCGACGGCGATGGCGGGCATTTGGTGGCGAGCAGTTTGAGGACGAGCGCCATTTTAGCG 362
consensus_2467#2 CGCCACAGCCCGCGTGCACACGCGCGCATGTCCGCGGCAGAGGTGCATGAACTGTTGGGT 309
* * * *
consensus_2467#0 GACATTTTCGAGGAGGTGCTGAACTACATGTACACGGNCAAAATCTCAGTCAAGAAGAAA 456
consensus_2467#3 GACTCTGCC-------CGCCCACCT-CACCTGTCTCGCCGTTGCCTCCTC--------AG 449
consensus_2467#1 GAGCGGAAG-----GCCAGATTCCGCCATTTACACGAACATTGTTGCCCCC-------GA 410
consensus_2467#2 GGGTTTACG------GAAGAATCCGGTGTC-ATTCTAATAAAGTGTCCTCGGCCCGGAAA 362
* * *
consensus_2467#0 GACGTCAACCTGATGATG--TCGTCGGGACAGATCCTCGGCATCCGCTTCCTCGACAAGC 514
consensus_2467#3 GTCGACAACTCGTC--CG--TGATCGAGATCGACTT----CATCCGCTCGG--------- 492
consensus_2467#1 ACCTACGGTTC-----TG--CCCCCGCGTTGCACCCCTGACACTTGTCACGCGCGAAAAA 463
consensus_2467#2 CTTTGTGGCGCCTTTTTAAACAGTTCTTATTCACCTCAGCTTCACACCTTTGCACTAACC 422
*
consensus_2467#0 TCTGCTCGCAGAAACGGGACGTTTCGCCGG-AGGACAAAGACAAGTTTCCTTAC--GACA 571
consensus_2467#3 ------------------------------------------------------------
consensus_2467#1 AAAAAAGCCCACAGGGCGACGATGACCGAC-GAAAAAGTGACGGAAGTTCGGGA--GAAA 520
consensus_2467#2 AGTGGAAACCACGTGACGACCCCGCTCGACCAAAGTAACCACAAAGTTAAATAAATGGTG 482
consensus_2467#0 TCGTCAAGATGGCGCTGCCGCCGGAAGCGCAGCTGGCGGCCGACGCAGAGGTGCTCGGCG 631
consensus_2467#3 ------------------------------------------------------------
consensus_2467#1 GCACGAACTAATGTGTGATTAGCTAACGCGAGCTAACGCTGGCCTGAGT----------- 569
consensus_2467#2 TCGCCAGTAGCTCTGTGTCGTTCTGCGTAGACCCATCGAC-------------------- 522
consensus_2467#0 ATCAC 636
consensus_2467#3 -----
consensus_2467#1 -----
consensus_2467#2 -----
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |