These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [AAAGCTGATTCATTTATTTAAATCTGTTAAATTTAGTCACAAAATAACCTTTGATTTATATTTTAAAAAATGCAAACAGCTAACATAACTAAAATCAATAAGTCGCCCGCTGAACAAGGTAAGATAATACTGGTTTAATCCGTTGTGAATCTAAATTCTTCCAATATGTCTGGAGATGGCCCTCATCAAATAAGATTTAACAAGATCAAAGGATCAAAAAGGGTGTGAGACCGGTCCTCCAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCGGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGTCAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCATCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGCTGGAGGAAGCCCAGAATCATGACTGCTTTGAGCGTAAAATCACAAAATTTAACCCATGTGACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGCGCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCAT] [+] EMBL CA329946 [AAAGCTGATTCATTTATTTAAATCTGTTAAATTTAGTCACAAAATAACCTTTGATTTATATTTTAAAAAATGCAAACAGCTAACATAACTAAAATCAATAAGTCGCCCGCTGAACAAGGTAAGATAATACTGGTTTAATCCGTTGTGAATCTAAATTCTTCCAATATGTCTGGAGATGGCCCTCATCAAATAAGATTTAACAAGATCAAAGGATCAAAAAGGGTGTGAGACCGGTCCTCCAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCGGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGTCAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCATCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGCTGGAGGAAGCCCAGAATCATGACTGCTTTGAGCGTAAAATCACAAAATTTAACCCATGTGACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGCGCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCAT] consensusID : consensus_247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [ACTCAGCACAGATATAGAGTACTTGTGTATAATGTGGTCTGCAGGGTGTGAGACCGGTCCTCCAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCAGTAACATCTGGACTAGCCACAACACTAGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGTCAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCATCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGCTGGAGGATGCCCAGAATCATGACTGCTCTGAGCGTAAAATCACAAAATTTAACCCATGTGACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGCGCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCATCCCAGACCCCCCTTGCCCCTGTTTTTGCAGCTAAGTGAGGATCAGGCCGCTCTGCTCATCCAGGCCTTCTGGAGGGGCTACAAGGTCAGGGTACAGCCAGCCGTGCAAGAGTTGCGTCGGTGGCAAAAAGCGCTCAGAG] [+] EMBL CA333057 [ACTCAGCACAGATATAGAGTACTTGTGTATAATGTGGTCTGCAGGGTGTGAGACCGGTCCTCCAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCAGTAACATCTGGACTAGCCACAACACTAGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGTCAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCATCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGCTGGAGGATGCCCAGAATCATGACTGCTCTGAGCGTAAAATCACAAAATTTAACCCATGTGACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGCGCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCATCCCAGACCCCCCTTGCCCCTGTTTTTGCAGCTAAGTGAGGATCAGGCCGCTCTGCTCATCCAGGCCTTCTGGAGGGGCTACAAGGTCAGGGTACAGCCAGCCGTGCAAGAGTTGCGTCGGTGGCAAAAAGCGCTCAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_247#0 AAAGCTGATTCATTTATTTAAATCTGTTAAATTTAGTCACAAAATAACCTTTGATTTATA 60 consensus_247#1 ------------------------------------------------------------ consensus_247#0 TTTTAAAAAATGCAAACAGCTAACATAACTAAAATCAATAAGTCGCCCGCTGAACAAGGT 120 consensus_247#1 ------------------------------------------------------------ consensus_247#0 AAGATAATACTGGTTTAATCCGTTGTGAATCTAAATTCTTCCAATATGTCTGGAGATGGC 180 consensus_247#1 ----------------------------------------------------------AC 2 * consensus_247#0 CCTCATCAAATA-AGATTTAACAAGATCAAAGGATCAAAAAGGGTGTGAGACCGGTCCTC 239 consensus_247#1 TCAGCACAGATATAGAGTACTTGTGTATAATGTGGTCTGCAGGGTGTGAGACCGGTCCTC 62 * ** *** *** * * ** * ******************** consensus_247#0 CAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCGG------------------------ 275 consensus_247#1 CAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCAGTAACATCTGGACTAGCCACAACAC 122 ********************************** * consensus_247#0 ---GATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGT 332 consensus_247#1 TAGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGT 182 ********************************************************* consensus_247#0 CAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCA 392 consensus_247#1 CAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCA 242 ************************************************************ consensus_247#0 TCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGC 452 consensus_247#1 TCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGC 302 ************************************************************ consensus_247#0 TGGAGGAAGCCCAGAATCATGACTGCTTTGAGCGTAAAATCACAAAATTTAACCCATGTG 512 consensus_247#1 TGGAGGATGCCCAGAATCATGACTGCTCTGAGCGTAAAATCACAAAATTTAACCCATGTG 362 ******* ******************* ******************************** consensus_247#0 ACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGC 572 consensus_247#1 ACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGC 422 ************************************************************ consensus_247#0 GCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCAT---------------- 616 consensus_247#1 GCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCATCCCAGACCCCCCTTGC 482 ******************************************** consensus_247#0 ------------------------------------------------------------ consensus_247#1 CCCTGTTTTTGCAGCTAAGTGAGGATCAGGCCGCTCTGCTCATCCAGGCCTTCTGGAGGG 542 consensus_247#0 ------------------------------------------------------------ consensus_247#1 GCTACAAGGTCAGGGTACAGCCAGCCGTGCAAGAGTTGCGTCGGTGGCAAAAAGCGCTCA 602 consensus_247#0 --- consensus_247#1 GAG 605 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |