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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[AAAGCTGATTCATTTATTTAAATCTGTTAAATTTAGTCACAAAATAACCTTTGATTTATATTTTAAAAAATGCAAACAGCTAACATAACTAAAATCAATAAGTCGCCCGCTGAACAAGGTAAGATAATACTGGTTTAATCCGTTGTGAATCTAAATTCTTCCAATATGTCTGGAGATGGCCCTCATCAAATAAGATTTAACAAGATCAAAGGATCAAAAAGGGTGTGAGACCGGTCCTCCAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCGGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGTCAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCATCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGCTGGAGGAAGCCCAGAATCATGACTGCTTTGAGCGTAAAATCACAAAATTTAACCCATGTGACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGCGCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCAT]
[+] EMBL CA329946 [AAAGCTGATTCATTTATTTAAATCTGTTAAATTTAGTCACAAAATAACCTTTGATTTATATTTTAAAAAATGCAAACAGCTAACATAACTAAAATCAATAAGTCGCCCGCTGAACAAGGTAAGATAATACTGGTTTAATCCGTTGTGAATCTAAATTCTTCCAATATGTCTGGAGATGGCCCTCATCAAATAAGATTTAACAAGATCAAAGGATCAAAAAGGGTGTGAGACCGGTCCTCCAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCGGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGTCAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCATCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGCTGGAGGAAGCCCAGAATCATGACTGCTTTGAGCGTAAAATCACAAAATTTAACCCATGTGACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGCGCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCAT]
consensusID : consensus_247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[ACTCAGCACAGATATAGAGTACTTGTGTATAATGTGGTCTGCAGGGTGTGAGACCGGTCCTCCAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCAGTAACATCTGGACTAGCCACAACACTAGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGTCAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCATCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGCTGGAGGATGCCCAGAATCATGACTGCTCTGAGCGTAAAATCACAAAATTTAACCCATGTGACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGCGCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCATCCCAGACCCCCCTTGCCCCTGTTTTTGCAGCTAAGTGAGGATCAGGCCGCTCTGCTCATCCAGGCCTTCTGGAGGGGCTACAAGGTCAGGGTACAGCCAGCCGTGCAAGAGTTGCGTCGGTGGCAAAAAGCGCTCAGAG]
[+] EMBL CA333057 [ACTCAGCACAGATATAGAGTACTTGTGTATAATGTGGTCTGCAGGGTGTGAGACCGGTCCTCCAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCAGTAACATCTGGACTAGCCACAACACTAGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGTCAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCATCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGCTGGAGGATGCCCAGAATCATGACTGCTCTGAGCGTAAAATCACAAAATTTAACCCATGTGACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGCGCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCATCCCAGACCCCCCTTGCCCCTGTTTTTGCAGCTAAGTGAGGATCAGGCCGCTCTGCTCATCCAGGCCTTCTGGAGGGGCTACAAGGTCAGGGTACAGCCAGCCGTGCAAGAGTTGCGTCGGTGGCAAAAAGCGCTCAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_247#0 AAAGCTGATTCATTTATTTAAATCTGTTAAATTTAGTCACAAAATAACCTTTGATTTATA 60
consensus_247#1 ------------------------------------------------------------
consensus_247#0 TTTTAAAAAATGCAAACAGCTAACATAACTAAAATCAATAAGTCGCCCGCTGAACAAGGT 120
consensus_247#1 ------------------------------------------------------------
consensus_247#0 AAGATAATACTGGTTTAATCCGTTGTGAATCTAAATTCTTCCAATATGTCTGGAGATGGC 180
consensus_247#1 ----------------------------------------------------------AC 2
*
consensus_247#0 CCTCATCAAATA-AGATTTAACAAGATCAAAGGATCAAAAAGGGTGTGAGACCGGTCCTC 239
consensus_247#1 TCAGCACAGATATAGAGTACTTGTGTATAATGTGGTCTGCAGGGTGTGAGACCGGTCCTC 62
* ** *** *** * * ** * ********************
consensus_247#0 CAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCGG------------------------ 275
consensus_247#1 CAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCAGTAACATCTGGACTAGCCACAACAC 122
********************************** *
consensus_247#0 ---GATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGT 332
consensus_247#1 TAGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGT 182
*********************************************************
consensus_247#0 CAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCA 392
consensus_247#1 CAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCA 242
************************************************************
consensus_247#0 TCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGC 452
consensus_247#1 TCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGC 302
************************************************************
consensus_247#0 TGGAGGAAGCCCAGAATCATGACTGCTTTGAGCGTAAAATCACAAAATTTAACCCATGTG 512
consensus_247#1 TGGAGGATGCCCAGAATCATGACTGCTCTGAGCGTAAAATCACAAAATTTAACCCATGTG 362
******* ******************* ********************************
consensus_247#0 ACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGC 572
consensus_247#1 ACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGC 422
************************************************************
consensus_247#0 GCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCAT---------------- 616
consensus_247#1 GCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCATCCCAGACCCCCCTTGC 482
********************************************
consensus_247#0 ------------------------------------------------------------
consensus_247#1 CCCTGTTTTTGCAGCTAAGTGAGGATCAGGCCGCTCTGCTCATCCAGGCCTTCTGGAGGG 542
consensus_247#0 ------------------------------------------------------------
consensus_247#1 GCTACAAGGTCAGGGTACAGCCAGCCGTGCAAGAGTTGCGTCGGTGGCAAAAAGCGCTCA 602
consensus_247#0 ---
consensus_247#1 GAG 605
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |