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Takifugu rubripes
cluster # 247 cluster # 247       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_247#0 length = 616 sequences # 1  
consensus_247#1 length = 605 sequences # 1  

consensusID : consensus_247#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence
                              [AAAGCTGATTCATTTATTTAAATCTGTTAAATTTAGTCACAAAATAACCTTTGATTTATATTTTAAAAAATGCAAACAGCTAACATAACTAAAATCAATAAGTCGCCCGCTGAACAAGGTAAGATAATACTGGTTTAATCCGTTGTGAATCTAAATTCTTCCAATATGTCTGGAGATGGCCCTCATCAAATAAGATTTAACAAGATCAAAGGATCAAAAAGGGTGTGAGACCGGTCCTCCAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCGGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGTCAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCATCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGCTGGAGGAAGCCCAGAATCATGACTGCTTTGAGCGTAAAATCACAAAATTTAACCCATGTGACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGCGCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCAT]

[+] EMBL CA329946             [AAAGCTGATTCATTTATTTAAATCTGTTAAATTTAGTCACAAAATAACCTTTGATTTATATTTTAAAAAATGCAAACAGCTAACATAACTAAAATCAATAAGTCGCCCGCTGAACAAGGTAAGATAATACTGGTTTAATCCGTTGTGAATCTAAATTCTTCCAATATGTCTGGAGATGGCCCTCATCAAATAAGATTTAACAAGATCAAAGGATCAAAAAGGGTGTGAGACCGGTCCTCCAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCGGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGTCAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCATCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGCTGGAGGAAGCCCAGAATCATGACTGCTTTGAGCGTAAAATCACAAAATTTAACCCATGTGACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGCGCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCAT]


>consensus_247#0 AAAGCTGATTCATTTATTTAAATCTGTTAAATTTAGTCACAAAATAACCTTTGATTTATA TTTTAAAAAATGCAAACAGCTAACATAACTAAAATCAATAAGTCGCCCGCTGAACAAGGT AAGATAATACTGGTTTAATCCGTTGTGAATCTAAATTCTTCCAATATGTCTGGAGATGGC CCTCATCAAATAAGATTTAACAAGATCAAAGGATCAAAAAGGGTGTGAGACCGGTCCTCC AGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCGGGATTTGAAGATCCCCTGAGAGATCT ACTTCTTTGGACCCCTTCTCCTCCATCAGCGTCAGGAAAAAGACATCCTCCCATGGATAA AATCTCATTTCCACAAGTACCTAGCCGTCCCATCTCCCATTATTTGGAGACAAATGTGTA TCCGGTGTTGGTGCCTGGACTTGAGGCTTTGCTGGAGGAAGCCCAGAATCATGACTGCTT TGAGCGTAAAATCACAAAATTTAACCCATGTGACTTCCTCACTGAGTGGCTCTATAATCA CAACCCTCGGAGACCAGACCAGACCCAAGTGCGCTTTGATGACATCCCCTTTGTGAAGGC CTGGATCAGCAGTCAT



consensusID : consensus_247#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence
                              [ACTCAGCACAGATATAGAGTACTTGTGTATAATGTGGTCTGCAGGGTGTGAGACCGGTCCTCCAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCAGTAACATCTGGACTAGCCACAACACTAGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGTCAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCATCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGCTGGAGGATGCCCAGAATCATGACTGCTCTGAGCGTAAAATCACAAAATTTAACCCATGTGACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGCGCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCATCCCAGACCCCCCTTGCCCCTGTTTTTGCAGCTAAGTGAGGATCAGGCCGCTCTGCTCATCCAGGCCTTCTGGAGGGGCTACAAGGTCAGGGTACAGCCAGCCGTGCAAGAGTTGCGTCGGTGGCAAAAAGCGCTCAGAG]

[+] EMBL CA333057             [ACTCAGCACAGATATAGAGTACTTGTGTATAATGTGGTCTGCAGGGTGTGAGACCGGTCCTCCAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCAGTAACATCTGGACTAGCCACAACACTAGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGTCAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCATCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGCTGGAGGATGCCCAGAATCATGACTGCTCTGAGCGTAAAATCACAAAATTTAACCCATGTGACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGCGCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCATCCCAGACCCCCCTTGCCCCTGTTTTTGCAGCTAAGTGAGGATCAGGCCGCTCTGCTCATCCAGGCCTTCTGGAGGGGCTACAAGGTCAGGGTACAGCCAGCCGTGCAAGAGTTGCGTCGGTGGCAAAAAGCGCTCAGAG]


>consensus_247#1 ACTCAGCACAGATATAGAGTACTTGTGTATAATGTGGTCTGCAGGGTGTGAGACCGGTCC TCCAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCAGTAACATCTGGACTAGCCACAAC ACTAGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGC GTCAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCC CATCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTT GCTGGAGGATGCCCAGAATCATGACTGCTCTGAGCGTAAAATCACAAAATTTAACCCATG TGACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGT GCGCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCATCCCAGACCCCCCTT GCCCCTGTTTTTGCAGCTAAGTGAGGATCAGGCCGCTCTGCTCATCCAGGCCTTCTGGAG GGGCTACAAGGTCAGGGTACAGCCAGCCGTGCAAGAGTTGCGTCGGTGGCAAAAAGCGCT CAGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_247#0      AAAGCTGATTCATTTATTTAAATCTGTTAAATTTAGTCACAAAATAACCTTTGATTTATA 60
consensus_247#1      ------------------------------------------------------------
                                                                                 

consensus_247#0      TTTTAAAAAATGCAAACAGCTAACATAACTAAAATCAATAAGTCGCCCGCTGAACAAGGT 120
consensus_247#1      ------------------------------------------------------------
                                                                                 

consensus_247#0      AAGATAATACTGGTTTAATCCGTTGTGAATCTAAATTCTTCCAATATGTCTGGAGATGGC 180
consensus_247#1      ----------------------------------------------------------AC 2
                                                                                *

consensus_247#0      CCTCATCAAATA-AGATTTAACAAGATCAAAGGATCAAAAAGGGTGTGAGACCGGTCCTC 239
consensus_247#1      TCAGCACAGATATAGAGTACTTGTGTATAATGTGGTCTGCAGGGTGTGAGACCGGTCCTC 62
                      *    ** *** *** *      *   ** *        ********************

consensus_247#0      CAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCGG------------------------ 275
consensus_247#1      CAGGCGTTGAGGGGTCAAGTCGGTCACATTTTCCAGTAACATCTGGACTAGCCACAACAC 122
                     ********************************** *                        

consensus_247#0      ---GATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGT 332
consensus_247#1      TAGGATTTGAAGATCCCCTGAGAGATCTACTTCTTTGGACCCCTTCTCCTCCATCAGCGT 182
                        *********************************************************

consensus_247#0      CAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCA 392
consensus_247#1      CAGGAAAAAGACATCCTCCCATGGATAAAATCTCATTTCCACAAGTACCTAGCCGTCCCA 242
                     ************************************************************

consensus_247#0      TCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGC 452
consensus_247#1      TCTCCCATTATTTGGAGACAAATGTGTATCCGGTGTTGGTGCCTGGACTTGAGGCTTTGC 302
                     ************************************************************

consensus_247#0      TGGAGGAAGCCCAGAATCATGACTGCTTTGAGCGTAAAATCACAAAATTTAACCCATGTG 512
consensus_247#1      TGGAGGATGCCCAGAATCATGACTGCTCTGAGCGTAAAATCACAAAATTTAACCCATGTG 362
                     ******* ******************* ********************************

consensus_247#0      ACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGC 572
consensus_247#1      ACTTCCTCACTGAGTGGCTCTATAATCACAACCCTCGGAGACCAGACCAGACCCAAGTGC 422
                     ************************************************************

consensus_247#0      GCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCAT---------------- 616
consensus_247#1      GCTTTGATGACATCCCCTTTGTGAAGGCCTGGATCAGCAGTCATCCCAGACCCCCCTTGC 482
                     ********************************************                

consensus_247#0      ------------------------------------------------------------
consensus_247#1      CCCTGTTTTTGCAGCTAAGTGAGGATCAGGCCGCTCTGCTCATCCAGGCCTTCTGGAGGG 542
                                                                                 

consensus_247#0      ------------------------------------------------------------
consensus_247#1      GCTACAAGGTCAGGGTACAGCCAGCCGTGCAAGAGTTGCGTCGGTGGCAAAAAGCGCTCA 602
                                                                                 

consensus_247#0      ---
consensus_247#1      GAG 605
                        




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)