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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2482#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 610 fasta sequence
[GCTGTAAAACGTGCTCCGTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTCGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAGAGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCCGTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGACTTCAACAGGAAGCTGACAGCGTACCTGGACCTGACACTGAGGACCTGCTTTGTGATTCCTCTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAGACCTCTTCTCTCAGCTGGCGTCTGGCTCCTACCGTAGCTACCTGATGCACGAGGACCTGGTTGTGACCGAGCG]
[+] EMBL CA588393 [GCTGTAAAACGTGCTCCGTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTCGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAGAGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCCGTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGACTTCAACAGGAAGCTGACAGCGTACCTGGACCTGACACTGAGGACCTGCTTTGTGATTCCTCTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAGACCTCTTCTCTCAGCTGGCGTCTGGCTCCTACCGTAGCTACCTGATGCACGAGGACCTGGTTGTGACCGAGCG]
[+] EMBL BU805263 [ GCTCCGTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTGGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAGAGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCCGTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGACTTCAACAGGAAGCTGACAGCGTACCTGGACCTGACACTGAGGACCTGCTTTGTGATTCCTCTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAGACCTCTTCTCTCAGCTGGCGTCTGGCTCCTACCGTAGCTACCTGATGCACGAGGACCTGGTTGTGACCGAG ]
[+] EMBL CA590383 [ GCTCCGTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTCGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAGAGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCCGTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGACTTCAACAGGAAGCTGACAGCGTACCTGGGCCTGACACTGAGGACCTGCTTTGTGATTCCTCTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAAACCTCTTCTCTCAGCTGGCGTCTGGCTCCTACCGTAGCTACCTGATGCACGAGGACCTGGTT ]
[+] EMBL CA333125 [ GCTCCGTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTCGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAGAGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACACAACNCGCGTGATCCCGGCC ]
consensusID : consensus_2482#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[CAAACTGCGTCACAACCCGGAGCTGCGAAAGACAGCCCATCCGTCCACAGGTTCTGCTCCGTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTGGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAGAGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCCGTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGACTTCAACAGGAAGCTGACAGCGTACCTGGACCTGACACTGAGGACCTGCTTTGTGATTCCTCTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAGACCTCTTCTCT]
[+] EMBL BU805560 [CAAACTGCGTCACAACCCGGAGCTGCGAAAGACAGCCCATCCGTCCACAGGTTCTGCTCCGTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTGGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAGAGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCCGTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGACTTCAACAGGAAGCTGACAGCGTACCTGGACCTGACACTGAGGACCTGCTTTGTGATTCCTCTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAGACCTCTTCTCT]
consensusID : consensus_2482#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 358 fasta sequence
[GCGAAAGACAGCCCACCGTCGACAGGTTCTGCTCCGTTGTCCTCTGAAGAAGCTGACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTGGGCATCGACTTCATCCTCAGCGGGCTGATCGAGGGGGGGGAACGAATATATCGATAGTTCGCTCCAAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATTTCCAAGGTTTTTGGGGGGAAAAAAAGGGTTTTTAAAAAAAAA]
[+] EMBL FR0063145 [GCGAAAGACAGCCCACCGTCGACAGGTTCTGCTCCGTTGTCCTCTGAAGAAGCTGACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTCGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATTTCCAAGGTTTTTGGGGGGAAAAAAAGGGTTTTTAAAAAAAAA]
[+] EMBL CA333124 [ ACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTGGGCATCGACTTCATCCTCAGTTTTTTTATCGAGGGGGGGAAACGAATATATCGATAGTTCGTTCCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2482#0 -------------------------------------------GCTGTAAAACGTGCTCC 17
consensus_2482#1 CAAACTGCGTCACAACCCGGAGCTGCGAAAGACAGCCCATCCGTCCACAGGTTCTGCTCC 60
consensus_2482#2 -------------------------GCGAAAGACAGCCCACCGTCGACAGGTTCTGCTCC 35
* * ******
consensus_2482#0 GTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCG 77
consensus_2482#1 GTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCG 120
consensus_2482#2 GTTGTCCTCTGAAGAAGCTGACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCG 95
******************* ****************************************
consensus_2482#0 GCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTG 137
consensus_2482#1 GCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTG 180
consensus_2482#2 GCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTG 155
************************************************************
consensus_2482#0 GCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTCGGC 197
consensus_2482#1 GCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTGGGC 240
consensus_2482#2 GCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTGGGC 215
******************************************************** ***
consensus_2482#0 ATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCT 257
consensus_2482#1 ATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCT 300
consensus_2482#2 ATCGACTTCATCCTCAGCGGGCTGATCGAGGGGGGGGAACGAATATATCGATAGTTCGCT 275
**** *********************** ******** * ********** ******
consensus_2482#0 CCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAG 317
consensus_2482#1 CCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAG 360
consensus_2482#2 CCAAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATTTCCAAGGTTTTTGGGGGGA 335
** ************************************* * * ** *
consensus_2482#0 AGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCC 377
consensus_2482#1 AGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCC 420
consensus_2482#2 AAAAAAGGGTTTTTAAAAAAAAA------------------------------------- 358
* * * * * *
consensus_2482#0 GTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGAC 437
consensus_2482#1 GTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGAC 480
consensus_2482#2 ------------------------------------------------------------
consensus_2482#0 TTCAACAGGAAGCTGACAGCGTACCTGGACCTGACACTGAGGACCTGCTTTGTGATTCCT 497
consensus_2482#1 TTCAACAGGAAGCTGACAGCGTACCTGGACCTGACACTGAGGACCTGCTTTGTGATTCCT 540
consensus_2482#2 ------------------------------------------------------------
consensus_2482#0 CTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAGACCTCTTCTCTCAGCTGGCG 557
consensus_2482#1 CTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAGACCTCTTCTCT--------- 591
consensus_2482#2 ------------------------------------------------------------
consensus_2482#0 TCTGGCTCCTACCGTAGCTACCTGATGCACGAGGACCTGGTTGTGACCGAGCG 610
consensus_2482#1 -----------------------------------------------------
consensus_2482#2 -----------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |