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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 753 fasta sequence
[TACTGCGGACTCGACTTCAGCAACTTGTCACCTCTGCGCTTCCGCGATCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATCGCCGGACAGCCCGCATTCACA-GACGTGGACACCAGTCCAGATTTCGGTGCTTTGGGGTTCCTGCACGACAACAAACCCAGCGTTCTGTCCAATCCGGGGACGAATTTCAACTTCCAGGCGCCGGACATGCACGGGGGCGACTTTGCACTGATCGAGCTGGAAGTGTATCGAGTTGAAAGTTTGGGAATACTGCTTAAGAAACCCTGGAGGAACATTCAATGGACAACAGAGAAAAAGCAAGAGTTGCTACAGAACATTTCCAAGTACAGGCCTGGCATCAGTGCCGTTCCCCAGGCCCGAATCCTGTTGGTGGGGCCCGTCGGAGCTGGCAAATCCAGCTTCTTTAACTCCGTCAACTCGATATTCCGAGGCAGCATGACGTGCCAGGCCATC]
[+] EMBL CA591571 [TACTGCGGACTCGACTTCAGCAACTTGTCACCTCTGCGCTTCCGCGATCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATCGCCGGACAGCCCGCATTCACA GACGTGGACACCAGTCCAGATTTCGGTGCTTTGGTGTTCCTGCACGACAACAAACCCAGCGTTCTGTCCAATCCGGGGACGAATTTCAACTTCCAGGCGCCGGACATGCACGGGGGCGACTTTGCACTGATCGAGCTGGAAGTGTATCGAGTTGAAAGTTTGGGAATACTGCTTAAGAAACCCTGGAGGAACATTCAATGGACAACAGAGAAAAAGCAAGAGTTGCTACAGAACATTTCCAAGTACAGGCCTGGCATCAGTGCCGTTCCCCAGGCCCGAATCCTGTTGGTGGGGCCCGTCGGAGCTGGCAAATCCAGCTTCTTTAACTCCGTCAACTCGATATTCCGAGGCAGCATGACGTGCCAGGCCATC]
[+] EMBL FR0061370 [ CGCGATCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATCGCCGGACAGCCCGCATTCACAGGACGTGGgac ]
[+] EMBL FR0062023 [ TCACGTCCAGCCTGTCTCAAGAGCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGGACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGNGGGGGGC ]
[+] EMBL FR0064095 [ GTCCAGCCTGTCTNAAGAGCAGGAGAAGAAGCTGCTCTCTCTCTCCGGACACGCCAGACTCCATCTCCTCTACAA GCANGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATCGCCGGACAGCCCGCATTCACA GACG ]
[+] EMBL FR0059098 [ CTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATCGCCGGACAGCCCGCATTCACA GACGTGGACACCAGTCCAGATTTCGGTGCTTTGGGGTTCCTGCACGACAACAAACCCAGCGTTCTGTCCAATCCGGGGACGAATTTCAACTTTCAGGCGCCGGAC ]
consensusID : consensus_2486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence
[AATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCGGACTGTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAATTTTTCTCAGCGATCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGGCGGGCGTGTCTATGGGGCCTATACCTCCAAGG]
[+] EMBL CA589035 [AATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCGGACTGTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAATTTTTCTCAGCGATCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGGCGGGCGTGTCTATGGGGCCTATACCTCCAAGG]
consensusID : consensus_2486#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence
[CATGACTCGTTTAAAACTATTGGACAGTGCCTATGAACGTATATATTTACCGCATGTCTTTTAATTGTTGTAAATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCGGACTCTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAAACCGAACTCAGTTGTCGTAAAAAACGTCTAGAAGTTTTATATTGTGCATTCGATAGTTCGATACTCAATCAAATAATAGCGTGCGCAATGAAGGA]
[+] EMBL FR0059472 [CATGACTCGTTTAAAACTATTGGACAGTGCCTATGAACGTATATATTTACCGCATGTCTTTTAATTGTTGTAAATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCGGACTCTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAAACCGAACTCAGTTGTCGTAAAAAACGTCTAGAAGTTTTATATTGTGCATTCGATAGTTCGATACTCAATCAAATAATAGCGTGCGCAATGAAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2486#0 ------------------------------------------------------------
consensus_2486#1 AATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCG 60
consensus_2486#2 ------------------------------------------------------------
consensus_2486#0 -------------TACTGCGGACTCGACTTCAGCAACTTGTCACCTCTGCGCTTCCGCGA 47
consensus_2486#1 GACTGTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAATTTT--TCTCAGCGA 118
consensus_2486#2 ---------------------------CATGACTCGTTTAAAACTATTGGACAGTGCCTA 33
* * * * *
consensus_2486#0 TCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCT 107
consensus_2486#1 TCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCT 178
consensus_2486#2 TGAACGTAT-ATATTTACCG-CATGTCTTTTAATTGTTGTAAATCACAATTTAAATCGTC 91
* * ** * **** ** *** * * * * ** *
consensus_2486#0 CTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCAC 167
consensus_2486#1 CTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCAC 238
consensus_2486#2 AGTTTTATCTAGAGA-ACCAAACATACTTTCACTTTCGATCGGACTCTATACAGTTTCAG 150
* * * * ** * *** ** * ** * * * * * * * ****
consensus_2486#0 CGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAA 227
consensus_2486#1 CGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAA 298
consensus_2486#2 CTGTAATCGTTTCGACGGTC--CATAAAAACC-GAACTCAGTTGTCGTAAAAAACGTCTA 207
* * ** **** ** *** * * * * * * * **** ** * ** *
consensus_2486#0 CACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCC 287
consensus_2486#1 CACGGGCGGGCGTGTCTATGGGGCCTATACCTCCAAGG---------------------- 336
consensus_2486#2 GAAGTTTTATATTGTGCAT----TCGATAGTTCGAT--ACTCAATCAAATAATAGC-GTG 260
* * *** ** * *** ** *
consensus_2486#0 CGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAA 347
consensus_2486#1 ------------------------------------------------------------
consensus_2486#2 CGCAATGAAGGA------------------------------------------------ 272
consensus_2486#0 GGTGGTGGGCATCGCCGGACAGCCCGCATTCACAGACGTGGACACCAGTCCAGATTTCGG 407
consensus_2486#1 ------------------------------------------------------------
consensus_2486#2 ------------------------------------------------------------
consensus_2486#0 TGCTTTGGGGTTCCTGCACGACAACAAACCCAGCGTTCTGTCCAATCCGGGGACGAATTT 467
consensus_2486#1 ------------------------------------------------------------
consensus_2486#2 ------------------------------------------------------------
consensus_2486#0 CAACTTCCAGGCGCCGGACATGCACGGGGGCGACTTTGCACTGATCGAGCTGGAAGTGTA 527
consensus_2486#1 ------------------------------------------------------------
consensus_2486#2 ------------------------------------------------------------
consensus_2486#0 TCGAGTTGAAAGTTTGGGAATACTGCTTAAGAAACCCTGGAGGAACATTCAATGGACAAC 587
consensus_2486#1 ------------------------------------------------------------
consensus_2486#2 ------------------------------------------------------------
consensus_2486#0 AGAGAAAAAGCAAGAGTTGCTACAGAACATTTCCAAGTACAGGCCTGGCATCAGTGCCGT 647
consensus_2486#1 ------------------------------------------------------------
consensus_2486#2 ------------------------------------------------------------
consensus_2486#0 TCCCCAGGCCCGAATCCTGTTGGTGGGGCCCGTCGGAGCTGGCAAATCCAGCTTCTTTAA 707
consensus_2486#1 ------------------------------------------------------------
consensus_2486#2 ------------------------------------------------------------
consensus_2486#0 CTCCGTCAACTCGATATTCCGAGGCAGCATGACGTGCCAGGCCATC 753
consensus_2486#1 ----------------------------------------------
consensus_2486#2 ----------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |