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Takifugu rubripes
cluster # 2486 cluster # 2486       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2486#0 length = 753 sequences # 5  
consensus_2486#1 length = 336 sequences # 1  
consensus_2486#2 length = 272 sequences # 1  

consensusID : consensus_2486#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 753
fasta sequence
                              [TACTGCGGACTCGACTTCAGCAACTTGTCACCTCTGCGCTTCCGCGATCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATCGCCGGACAGCCCGCATTCACA-GACGTGGACACCAGTCCAGATTTCGGTGCTTTGGGGTTCCTGCACGACAACAAACCCAGCGTTCTGTCCAATCCGGGGACGAATTTCAACTTCCAGGCGCCGGACATGCACGGGGGCGACTTTGCACTGATCGAGCTGGAAGTGTATCGAGTTGAAAGTTTGGGAATACTGCTTAAGAAACCCTGGAGGAACATTCAATGGACAACAGAGAAAAAGCAAGAGTTGCTACAGAACATTTCCAAGTACAGGCCTGGCATCAGTGCCGTTCCCCAGGCCCGAATCCTGTTGGTGGGGCCCGTCGGAGCTGGCAAATCCAGCTTCTTTAACTCCGTCAACTCGATATTCCGAGGCAGCATGACGTGCCAGGCCATC]

[+] EMBL CA591571             [TACTGCGGACTCGACTTCAGCAACTTGTCACCTCTGCGCTTCCGCGATCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATCGCCGGACAGCCCGCATTCACA GACGTGGACACCAGTCCAGATTTCGGTGCTTTGGTGTTCCTGCACGACAACAAACCCAGCGTTCTGTCCAATCCGGGGACGAATTTCAACTTCCAGGCGCCGGACATGCACGGGGGCGACTTTGCACTGATCGAGCTGGAAGTGTATCGAGTTGAAAGTTTGGGAATACTGCTTAAGAAACCCTGGAGGAACATTCAATGGACAACAGAGAAAAAGCAAGAGTTGCTACAGAACATTTCCAAGTACAGGCCTGGCATCAGTGCCGTTCCCCAGGCCCGAATCCTGTTGGTGGGGCCCGTCGGAGCTGGCAAATCCAGCTTCTTTAACTCCGTCAACTCGATATTCCGAGGCAGCATGACGTGCCAGGCCATC]
[+] EMBL FR0061370            [                                          CGCGATCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATCGCCGGACAGCCCGCATTCACAGGACGTGGgac                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL FR0062023            [                                                                   TCACGTCCAGCCTGTCTCAAGAGCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGGACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGNGGGGGGC                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL FR0064095            [                                                                       GTCCAGCCTGTCTNAAGAGCAGGAGAAGAAGCTGCTCTCTCTCTCCGGACACGCCAGACTCCATCTCCTCTACAA GCANGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATCGCCGGACAGCCCGCATTCACA GACG                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL FR0059098            [                                                                                  CTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATCGCCGGACAGCCCGCATTCACA GACGTGGACACCAGTCCAGATTTCGGTGCTTTGGGGTTCCTGCACGACAACAAACCCAGCGTTCTGTCCAATCCGGGGACGAATTTCAACTTTCAGGCGCCGGAC                                                                                                                                                                                                                                                                           ]


>consensus_2486#0 TACTGCGGACTCGACTTCAGCAACTTGTCACCTCTGCGCTTCCGCGATCTGTCCACCATG TCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGA CACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTC CACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGT GTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGC GAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATC GCCGGACAGCCCGCATTCACAGACGTGGACACCAGTCCAGATTTCGGTGCTTTGGGGTTC CTGCACGACAACAAACCCAGCGTTCTGTCCAATCCGGGGACGAATTTCAACTTCCAGGCG CCGGACATGCACGGGGGCGACTTTGCACTGATCGAGCTGGAAGTGTATCGAGTTGAAAGT TTGGGAATACTGCTTAAGAAACCCTGGAGGAACATTCAATGGACAACAGAGAAAAAGCAA GAGTTGCTACAGAACATTTCCAAGTACAGGCCTGGCATCAGTGCCGTTCCCCAGGCCCGA ATCCTGTTGGTGGGGCCCGTCGGAGCTGGCAAATCCAGCTTCTTTAACTCCGTCAACTCG ATATTCCGAGGCAGCATGACGTGCCAGGCCATC



consensusID : consensus_2486#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence
                              [AATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCGGACTGTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAATTTTTCTCAGCGATCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGGCGGGCGTGTCTATGGGGCCTATACCTCCAAGG]

[+] EMBL CA589035             [AATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCGGACTGTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAATTTTTCTCAGCGATCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGGCGGGCGTGTCTATGGGGCCTATACCTCCAAGG]


>consensus_2486#1 AATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCG GACTGTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAATTTTTCTCAGCGATC TGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCT CTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCG CTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACA CGGGCGGGCGTGTCTATGGGGCCTATACCTCCAAGG



consensusID : consensus_2486#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence
                              [CATGACTCGTTTAAAACTATTGGACAGTGCCTATGAACGTATATATTTACCGCATGTCTTTTAATTGTTGTAAATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCGGACTCTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAAACCGAACTCAGTTGTCGTAAAAAACGTCTAGAAGTTTTATATTGTGCATTCGATAGTTCGATACTCAATCAAATAATAGCGTGCGCAATGAAGGA]

[+] EMBL FR0059472            [CATGACTCGTTTAAAACTATTGGACAGTGCCTATGAACGTATATATTTACCGCATGTCTTTTAATTGTTGTAAATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCGGACTCTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAAACCGAACTCAGTTGTCGTAAAAAACGTCTAGAAGTTTTATATTGTGCATTCGATAGTTCGATACTCAATCAAATAATAGCGTGCGCAATGAAGGA]


>consensus_2486#2 CATGACTCGTTTAAAACTATTGGACAGTGCCTATGAACGTATATATTTACCGCATGTCTT TTAATTGTTGTAAATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTT CACTTTCGATCGGACTCTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAAACC GAACTCAGTTGTCGTAAAAAACGTCTAGAAGTTTTATATTGTGCATTCGATAGTTCGATA CTCAATCAAATAATAGCGTGCGCAATGAAGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2486#0      ------------------------------------------------------------
consensus_2486#1      AATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCG 60
consensus_2486#2      ------------------------------------------------------------
                                                                                  

consensus_2486#0      -------------TACTGCGGACTCGACTTCAGCAACTTGTCACCTCTGCGCTTCCGCGA 47
consensus_2486#1      GACTGTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAATTTT--TCTCAGCGA 118
consensus_2486#2      ---------------------------CATGACTCGTTTAAAACTATTGGACAGTGCCTA 33
                                                   *            *    *         * *

consensus_2486#0      TCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCT 107
consensus_2486#1      TCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCT 178
consensus_2486#2      TGAACGTAT-ATATTTACCG-CATGTCTTTTAATTGTTGTAAATCACAATTTAAATCGTC 91
                      *      *  ** * ****  ** ***       * *    *     *    **   *  

consensus_2486#0      CTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCAC 167
consensus_2486#1      CTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCAC 238
consensus_2486#2      AGTTTTATCTAGAGA-ACCAAACATACTTTCACTTTCGATCGGACTCTATACAGTTTCAG 150
                         * * * * ** *  *** **    * **   * * *    *   *  *  * **** 

consensus_2486#0      CGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAA 227
consensus_2486#1      CGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAA 298
consensus_2486#2      CTGTAATCGTTTCGACGGTC--CATAAAAACC-GAACTCAGTTGTCGTAAAAAACGTCTA 207
                      *  * **  **** ** ***    * *  * * *  * *   **** **     * ** *

consensus_2486#0      CACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCC 287
consensus_2486#1      CACGGGCGGGCGTGTCTATGGGGCCTATACCTCCAAGG---------------------- 336
consensus_2486#2      GAAGTTTTATATTGTGCAT----TCGATAGTTCGAT--ACTCAATCAAATAATAGC-GTG 260
                       * *        ***  **     * ***  ** *                         

consensus_2486#0      CGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAA 347
consensus_2486#1      ------------------------------------------------------------
consensus_2486#2      CGCAATGAAGGA------------------------------------------------ 272
                                                                                  

consensus_2486#0      GGTGGTGGGCATCGCCGGACAGCCCGCATTCACAGACGTGGACACCAGTCCAGATTTCGG 407
consensus_2486#1      ------------------------------------------------------------
consensus_2486#2      ------------------------------------------------------------
                                                                                  

consensus_2486#0      TGCTTTGGGGTTCCTGCACGACAACAAACCCAGCGTTCTGTCCAATCCGGGGACGAATTT 467
consensus_2486#1      ------------------------------------------------------------
consensus_2486#2      ------------------------------------------------------------
                                                                                  

consensus_2486#0      CAACTTCCAGGCGCCGGACATGCACGGGGGCGACTTTGCACTGATCGAGCTGGAAGTGTA 527
consensus_2486#1      ------------------------------------------------------------
consensus_2486#2      ------------------------------------------------------------
                                                                                  

consensus_2486#0      TCGAGTTGAAAGTTTGGGAATACTGCTTAAGAAACCCTGGAGGAACATTCAATGGACAAC 587
consensus_2486#1      ------------------------------------------------------------
consensus_2486#2      ------------------------------------------------------------
                                                                                  

consensus_2486#0      AGAGAAAAAGCAAGAGTTGCTACAGAACATTTCCAAGTACAGGCCTGGCATCAGTGCCGT 647
consensus_2486#1      ------------------------------------------------------------
consensus_2486#2      ------------------------------------------------------------
                                                                                  

consensus_2486#0      TCCCCAGGCCCGAATCCTGTTGGTGGGGCCCGTCGGAGCTGGCAAATCCAGCTTCTTTAA 707
consensus_2486#1      ------------------------------------------------------------
consensus_2486#2      ------------------------------------------------------------
                                                                                  

consensus_2486#0      CTCCGTCAACTCGATATTCCGAGGCAGCATGACGTGCCAGGCCATC 753
consensus_2486#1      ----------------------------------------------
consensus_2486#2      ----------------------------------------------
                                                                    




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)