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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 249 cluster # 249       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_249#0 length = 535 sequences # 1  
 consensus_249#1 length = 70 sequences # 1  
consensusID : consensus_249#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence 
                              [CCCACCTGCCAAAACGGGCCGTGTTTGAAGAAGCGCCCTGCTTCGATGGTTCTTCTCTACGTGTATGGTGGGTTCCCTGTGGTCATCAGGCGACACCACCCTCACCAGCAGACAGTCGGGTTTACAGCCATGTTTGTCAGGAGCTGCTCAAACCCTTTGTGGGTCTTTGAGAAGACTCCGAGGTCAACGGGACCAGGGGAACGTGCACTGATGAGGTCTGGTGCTGGCTGACTGGTTCTTCTCACAAGGTTCTGCTGTCGTCTGTGTACAGTAACTTGTTCTTTGTCCATCTGTGATCATCAGCTTCAGGGGTAGCTTACATGGAGGCGGGGCTAGAATAACAGCAAGTATGTGAGTGTTTCTGTATTATAATTCTGTATCATCGGTATTCTTTTTGTAACTTTGATTATGAAAATCAGCCGGGTTTTTAGTCCTGGTCTGATCTCTTCCGTGATGAAGGTGACAACAGGTGTATCATCTCTGTTTATGAAGCTCTTTCTGTCCCATTGTGTTGTGAAAGGCTTTTTGTGCTTCA]

[+] EMBL FR0056159            [CCCACCTGCCAAAACGGGCCGTGTTTGAAGAAGCGCCCTGCTTCGATGGTTCTTCTCTACGTGTATGGTGGGTTCCCTGTGGTCATCAGGCGACACCACCCTCACCAGCAGACAGTCGGGTTTACAGCCATGTTTGTCAGGAGCTGCTCAAACCCTTTGTGGGTCTTTGAGAAGACTCCGAGGTCAACGGGACCAGGGGAACGTGCACTGATGAGGTCTGGTGCTGGCTGACTGGTTCTTCTCACAAGGTTCTGCTGTCGTCTGTGTACAGTAACTTGTTCTTTGTCCATCTGTGATCATCAGCTTCAGGGGTAGCTTACATGGAGGCGGGGCTAGAATAACAGCAAGTATGTGAGTGTTTCTGTATTATAATTCTGTATCATCGGTATTCTTTTTGTAACTTTGATTATGAAAATCAGCCGGGTTTTTAGTCCTGGTCTGATCTCTTCCGTGATGAAGGTGACAACAGGTGTATCATCTCTGTTTATGAAGCTCTTTCTGTCCCATTGTGTTGTGAAAGGCTTTTTGTGCTTCA]




>consensus_249#0
CCCACCTGCCAAAACGGGCCGTGTTTGAAGAAGCGCCCTGCTTCGATGGTTCTTCTCTAC
GTGTATGGTGGGTTCCCTGTGGTCATCAGGCGACACCACCCTCACCAGCAGACAGTCGGG
TTTACAGCCATGTTTGTCAGGAGCTGCTCAAACCCTTTGTGGGTCTTTGAGAAGACTCCG
AGGTCAACGGGACCAGGGGAACGTGCACTGATGAGGTCTGGTGCTGGCTGACTGGTTCTT
CTCACAAGGTTCTGCTGTCGTCTGTGTACAGTAACTTGTTCTTTGTCCATCTGTGATCAT
CAGCTTCAGGGGTAGCTTACATGGAGGCGGGGCTAGAATAACAGCAAGTATGTGAGTGTT
TCTGTATTATAATTCTGTATCATCGGTATTCTTTTTGTAACTTTGATTATGAAAATCAGC
CGGGTTTTTAGTCCTGGTCTGATCTCTTCCGTGATGAAGGTGACAACAGGTGTATCATCT
CTGTTTATGAAGCTCTTTCTGTCCCATTGTGTTGTGAAAGGCTTTTTGTGCTTCA

consensusID : consensus_249#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 70
fasta sequence 
                              [TGTCTCATTGTGTTGTGAAAGGCTTTTTGTGCTTCATCAAGCTCATGACAGCAAATTAAAGGCGTTGCAA]

[+] EMBL CA329951             [TGTCTCATTGTGTTGTGAAAGGCTTTTTGTGCTTCATCAAGCTCATGACAGCAAATTAAAGGCGTTGCAA]




>consensus_249#1
TGTCTCATTGTGTTGTGAAAGGCTTTTTGTGCTTCATCAAGCTCATGACAGCAAATTAAA
GGCGTTGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_249#0      CCCACCTGCCAAAACGGGCCGTGTTTGAAGAAGCGCCCTGCTTCGATGGTTCTTCTCTAC 60
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      GTGTATGGTGGGTTCCCTGTGGTCATCAGGCGACACCACCCTCACCAGCAGACAGTCGGG 120
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      TTTACAGCCATGTTTGTCAGGAGCTGCTCAAACCCTTTGTGGGTCTTTGAGAAGACTCCG 180
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      AGGTCAACGGGACCAGGGGAACGTGCACTGATGAGGTCTGGTGCTGGCTGACTGGTTCTT 240
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      CTCACAAGGTTCTGCTGTCGTCTGTGTACAGTAACTTGTTCTTTGTCCATCT-GTGATCA 299
consensus_249#1      -------TGTCTCATTGT--GTTGTGAAAGGCTTTTTGTGCTTCATCAAGCTCATGACAG 51
                             **     ***    **** *  *    **** ***  ** * **  ***   

consensus_249#0      TCAGCTTCAGGGGTAGCTTACATGGAGGCGGGGCTAGAATAACAGCAAGTATGTGAGTGT 359
consensus_249#1      CAAATTAAAGGCGTTGCAA----------------------------------------- 70
                       *  *  *** ** **                                           

consensus_249#0      TTCTGTATTATAATTCTGTATCATCGGTATTCTTTTTGTAACTTTGATTATGAAAATCAG 419
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      CCGGGTTTTTAGTCCTGGTCTGATCTCTTCCGTGATGAAGGTGACAACAGGTGTATCATC 479
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      TCTGTTTATGAAGCTCTTTCTGTCCCATTGTGTTGTGAAAGGCTTTTTGTGCTTCA 535
consensus_249#1      --------------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)