These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1727 fasta sequence [GCTAGCTTCCTGTTTACGCCACCGTACTTTCCTCCTTCAGGCTCGTTGCTCTGCCGGCTTTTTGGTTGAAACGCCGGGTGAGCCACACTTTCCTCCTCTTCTAGGTGTTTTAATTCACGAACATGTCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCGGACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACAGCTTCAGATACAGCCTTGATTTCCCCAACATGGGCCACTGCATCATCATCAACAACAAGAACTTTGACAGAAGAACAGGCATGAACACGCGAAACGGTACGGATGTAGACGCAGCCAACGCGATGAAAGTGTTCTTGAGCCTCGGCTACAAAGTGAAGGTGCACAACGACCAGACAGTGAATCAGATGAAACAGCTTTTAGTCTCTGCCGCAGAGGAAGATCACAGCGCCTGCGCCTCTTTTGTGTGCGTTCTGCTGAGTCATGGCGACGAGGGCGTG-TTTTTTGGTACCGATGGCTCTGTAGAGCTCAAGTACCTCACATCGCTTTTCAGAGGTGATCGTTGCAAGTCGCTGGTGGGAAAGCCCAAACTGTTCTTCATCCAGGCTTGCAGAGGCAACGATCTGGATGGAGGCATTGAAACCGACAGCGCAGCCGACAGCAGCACCACCAAGATCCCAGTGGAAGCTGACTTCCTCTACGCTTTCTCAACAGCCCCGGGTTACTACTCGTGGAGGAACACCACGAGCGGGTCCTGGTTCATGCAGTCGCTGTGTGACGCCATCAGCAAATACGGGAAAGAGCTGGAGCTTCAGCACATCTTGACGCGGGTGAACCACAAGGTGGCGGTAGATTTCGAGTCTGTCTCCAATTTACCAGGCTTCGACGCCAAGAAGCAAATCCCATGCATCGTGTCCATGCTGACCAAAGAGATGTATTTTTCCTGAAGGAGGCCGTGCTAACGCCCAGCGGAAAGGCTCGATGTTGTGTTTGTGAATTATCGTAGATTAAGACAGAGTAAAGGTGTTCTACTCACATTTCAAACTAGGCATTATAAGGTTCTTCCTGTGTGGATTTTATTTTGAAAAGGAATCTTTTTTTTAAGCCTCTGCAGGGAAACTCCTTTGTATTATTTTCAGTGCATGTTTTGAAGAATTTAGGAGCAATTAATCATGAAAAGGAATTTTTAGCTTCAACAAAGAGATCAGGTCTGGCAATAATGCACTTGTTTTTCTTTTTGTGTTTTGGGACTGCATGTGTTTGAGCTTTAGCGGCATCGTGTGTTAAGAATTCTTTTTTATACTTCATGGTGCTTCAGGCTTCTTAGCACGTATGATTCATATGTGCCCACTTGTATGACGCTGTCGTCTGTCAGTAGCTTGTGTGCTTCTGGTCTTTTTCTGTACAAAATGCCAGTTTTGAGTGCCTCTTCGCCGTCACTTGATACAGTCATTAATTAAACGTAACAGTCGACTTCACTCGTAGATGATACAAAAGTTTATGTAACTCTCAGCGTTGCAATGGTGAACTTAGCAGCGCATAAGCTAAAATCACCTGTGCTGTCACGTCTCTGATGTTTTGCTGTTTGACAATCTGGCCAGATGTGCAAACATTTGATACGAAGGTCAGCCTGGGACATTTTTGTAGTTTCACTATTTTGTATTCTACTCTGTGAAGCTGGTCTGTTTTAAATAAAGACCACTTTTATT] [+] EMBL CA590168 [GCTAGCTTCCTGTTTACGCCACCGTACTTTCCTCCTTCAGGCTCGTTGTTCTGCCGGCTTTTTGGTTGAAACGCCGGGTGAGCCACACTTTCCTCCTCTTCTAGGTGTTTTAATTCACGAACATGTCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCGGACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACAGCTTCAGATACAGCCTTGATTTCCCCAACATGGGCCACTGCATCATCATCAACAACAAGAACTTTGACAGAAGAACAGGCATGAACACGCGAAACGGTACGGATGTAGACGCAGCCAACGCGATGAAAGTGTTCTTGAGCCTCGGCTACAAAGTGAAGGTGCACAACGACCAGACAGTGAATCAGATGAAACAGCTTCTAGTCTCTGCCGCAGAGGAAGATCACAGCGCCTGCGCCTCTTTTGTGTGCGTTCTGCTGAGTCATGGCGACGAGGGCGTG TTTTTTGGTACCGATGGCTCTGTAGAGCTCAAGTACCTCACATCGCTTTTCAGAGGTGATCGTTGCAAGTCGCTGGTGGGAAAGCCCAAACTGTTCTTCATCCAGGCTTGCAGAGGCA ] [+] EMBL BU805620 [ CTGTTTACGCCACCGTACTTTCCTCCTTCAGGTTCGTTGCTCTGCCGGCTTTTTGGTTGAAACGCCGGGTGAGCCACACTTTCCTCCTCTTCTAGGTGTTTTAATTCACGAACATGTCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCGGACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACAGCTTCAGATACAGCCTTGATTTCCCCAACATGGGCCACTGCATCATCATCAACAACAAGAACTTTGACAGAAGAACAGGCATGAACACGCGAAACGGTACGGATGTAGACGCAGCCAACGCGATGAAAGTGTTCTTGAGCCTCGGCTACAAAGTGAAGGTGCACAACGACCAGACAGTGAATCAGATGAAACAGCTTTTAGTCTCTGCCGCAGAGGAAGATCACAGCGCCTGCGCCTCTTTTGTGTGCGTTCTGCTGAGTCATGGCGACGAGGGCGTGTTTTTTTGGTACCGATGGCTCTGTAGAGCTCAAGTACCT ] [+] EMBL FR0060150 [ CCGGCTTTTTGGTTGAAACGCCGGGTGAGCCACACTTTCCTGGGCTTCTAGGTGTTTTAATTCACGAACATGCCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCGGACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACAGCTTCAGATACAGCCTTGATTTCCCCAACATGGGCCACTGCATCATCATCAACAACAAGAACTTTGACAGAAGAACAGGCATGAACACGCGAAACGGTACGGATGTAGACGCAGCCAACGCGATGAAAGGGTTCTTGAGCCTCGGCTACAAAGTGAAGGGGCACAACGACCAGACAGTGAATCA ] [+] EMBL FR0060860 [ TTTGGGTGAAACGCCGGGTGAGCCACACTTTCCTCCTCTTCTAGGTGTTTTAATTCACGAACGTGTCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCGGACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACAGCTTCAGA ] [+] EMBL AY102865 [ TTGGTTGAAACGCCGGGTGAGCCACACTTTCCTCCTCTTCTAGGTGTTTTAATTCACGAACATGTCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCGGACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACAGCTTCAGATACAGCCTTGATTTCCCCAACATGGGCCACTGCATCATCATCAACAACAAGAACTTTGACAGAAGAACAGGCATGAACACGCGAAACGGTACGGATGTAGACGCAGCCAACGCGATGAAAGTGTTCTTGAGCCTCGGCTACAAAGTGAAGGTGCACAACGACCAGACAGTGAAGCAGATGAAACAGCTTTTAGTCTCTGCCGCAGAGGAAGATCACAGCGCCTGCGCCTCTTTTGTGTGCGTTCTGCTGAGTCATGGCGACGAGGGCGTG TTTTTTGGTACCGATGGCTCTGTAGAGCTCAAGTACCTCACATCGCTTTTCAGAGGTGATCGTTGCAAGTCGCTGGTGGGAAAGCCCAAACTGTTCTTCATCCAGGCTTGCAGAGGCAACGATCTGGATGGAGGCATTGAAACCGACAGCGCAGCCGACAGCAGCACCACCAAGATCCCAGTGGAAGCTGACTTCCTCTACGCTTTCTCAACAGCCCCGGGTTACTACTCGTGGAGGAACACCACGAGCGGGTCCTGGTTCATGCAGTCGCTGTGTGACGCCATCAGCAAATACGGGAAAGAGCTGGAGCTTCAGCACATCTTGACGCGGGTGAACCACAAGGTGGCGGTAGATTTCGAGTCTGTCTCCAATTTACCAGGCTTCGACGCCAAGAAGCAAATCCCATGCATCGTGTCCATGCTGACCAAAGAGATGTATTTTTCCTGAAGGAGGCCGTGCTAACGCCCAGCGGAAAGGCTCGATGTTGTGTTTGTGAATTATCGTAGATTAAGACAGAGTAAAGGTGTTCTACTCACATTTCAAACTAGGCATTATAAGGTTCTTCCTGTGTGGATTTTATTTTGAAAAGGAATCTTTTTTTTAAGCCTCTGCAGGGAAACTCCTTTGTATTATTTTCAGTGCATGTTTTGAAGAATTTAGGAGCAATTAATCATGAAAAGGAATTTTTAGCTTCAACAAAGAGATCAGGTCTGGCAATAATGCACTTGTTTTTCTTTTTGTGTTTTGGGACTGCATGTGTTTGAGCTTTAGCGGCATCGTGTGTTAAGAATTCTTTTTTATACTTCATGGTGCTTCAGGCTTCTTAGCACGTATGATTCATATGTGCCCACTTGTATGACGCTGTCGTCTGTCAGTAGCTTGTGTGCTTCTGGTCTTTTTCTGTACAAAATGCCAGTTTTGAGTGCCTCTTCGCCGTCACTTGATACAGTCATTAATTAAACGTAACAGTCGACTTCACTCGTAGATGATACAAAAGTTTATGTAACTCTCAGCGTTGCAATGGTGAACTTAGCAGCGCATAAGCTAAAATCACCTGTGCTGTCACGTCTCTGATGTTTTGCTGTTTGACAATCTGGCCAGATGTGCAAACATTTGATACGAAGGTCAGCCTGGGACATTTTTGTAGTTTCACTATTTTGTATTCTACTCTGTGAAGCTGGTCTGTTTTAAATAAAGACCACTTTTATT] [+] EMBL FR0059269 [ GATGAAACGCCGGGTGAGCCACACTTTCCTCCTCTTCTAGGTGTTTTAATTCACGAACATGTCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCGGACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACAGCTTCAGATACAGCCTTGATTTCCCCAACATGGGCCACTGCATCATCATCAACAACAAGAACTTTGACAGAAGAACAGGCATGAACACGCGAAACGGTACGGATGTAGACGCAGCCAACGCGATGAAAGTGTTCTTGAGCCTCGGCTACAAAGTGAAGGTGCACAACGACCAGACAGTGAATCAGATGAAACAGCTTTTAGTCTCTGCCGCAGAGGAAGATCACAGCGCCTGCGCCTCTTTTGTGGG ] consensusID : consensus_2494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [CCTCTGCAGGGAAACTCCTTTGTATTATTTTCAGTGCATGTTTTGAAGAATTTAGGAGCAATTAATCATGAAAAGGAATTTTTAGCTTCAACAAAGAGATCAGGTCTGGCAATAATGCACTTGTTTTTCTTTTTGTGTTTTGGGACTGCATGTGTTTGAGCTTTAGCGGCATCGTGTGTTAAGAATTCTTTTTTATACTTCATGGTGCTTCAGGCTTCTTAGCACGTATGATTCATATGTGCCCACTTGTATGACGCTGTCGTCTGTCAGTAGCTTGTGTGCAGTTTTGAGTGCCTCTTCGCCGTCACTTGATACAGTCATTAATTAAACGTAACAGTCGACTTCACTCGTAGATGATACAAAAGTTTATGTAACTCTCAGCGTTGCAATGGTGAACTTAGCAGCGCATAAGCTAAAATCACCTGTGCTGTCACGTCTCTGATGTTTTGCTGTTTGACAATCTGGCCAGATGTGCAAACATTTGATACGAAGGTCAGCCTGGGACATTTTTGTAGTTTCACTATTTTGTATTCTACTCTGTGAAGCTGGTCTGTTTTAAATAAAGACCACTTT] [-] EMBL CA332141 [CCTCTGCAGGGAAACTCCTTTGTATTATTTTCAGTGCATGTTTTGAAGAATTTAGGAGCAATTAATCATGAAAAGGAATTTTTAGCTTCAACAAAGAGATCAGGTCTGGCAATAATGCACTTGTTTTTCTTTTTGTGTTTTGGGACTGCATGTGTTTGAGCTTTAGCGGCATCGTGTGTTAAGAATTCTTTTTTATACTTCATGGTGCTTCAGGCTTCTTAGCACGTATGATTCATATGTGCCCACTTGTATGACGCTGTCGTCTGTCAGTAGCTTGTGTGCAGTTTTGAGTGCCTCTTCGCCGTCACTTGATACAGTCATTAATTAAACGTAACAGTCGACTTCACTCGTAGATGATACAAAAGTTTATGTAACTCTCAGCGTTGCAATGGTGAACTTAGCAGCGCATAAGCTAAAATCACCTGTGCTGTCACGTCTCTGATGTTTTGCTGTTTGACAATCTGGCCAGATGTGCAAACATTTGATACGAAGGTCAGCCTGGGACATTTTTGTAGTTTCACTATTTTGTATTCTACTCTGTGAAGCTGGTCTGTTTTAAATAAAGACCACTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2494#0 GCTAGCTTCCTGTTTACGCCACCGTACTTTCCTCCTTCAGGCTCGTTGCTCTGCCGGCTT 60 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 TTTGGTTGAAACGCCGGGTGAGCCACACTTTCCTCCTCTTCTAGGTGTTTTAATTCACGA 120 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 ACATGTCGGCCAACGGACCTTCACCCGGTGGAGACTTTACGGACGCGAAGAAAGGCGCCG 180 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 GACAACAGTCGGGTTCGTCTTCGGGCAGGGTGACCGTGGATGCCAAACCGGCCGCCTACA 240 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 GCTTCAGATACAGCCTTGATTTCCCCAACATGGGCCACTGCATCATCATCAACAACAAGA 300 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 ACTTTGACAGAAGAACAGGCATGAACACGCGAAACGGTACGGATGTAGACGCAGCCAACG 360 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 CGATGAAAGTGTTCTTGAGCCTCGGCTACAAAGTGAAGGTGCACAACGACCAGACAGTGA 420 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 ATCAGATGAAACAGCTTTTAGTCTCTGCCGCAGAGGAAGATCACAGCGCCTGCGCCTCTT 480 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 TTGTGTGCGTTCTGCTGAGTCATGGCGACGAGGGCGTGTTTTTTGGTACCGATGGCTCTG 540 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 TAGAGCTCAAGTACCTCACATCGCTTTTCAGAGGTGATCGTTGCAAGTCGCTGGTGGGAA 600 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 AGCCCAAACTGTTCTTCATCCAGGCTTGCAGAGGCAACGATCTGGATGGAGGCATTGAAA 660 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 CCGACAGCGCAGCCGACAGCAGCACCACCAAGATCCCAGTGGAAGCTGACTTCCTCTACG 720 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 CTTTCTCAACAGCCCCGGGTTACTACTCGTGGAGGAACACCACGAGCGGGTCCTGGTTCA 780 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 TGCAGTCGCTGTGTGACGCCATCAGCAAATACGGGAAAGAGCTGGAGCTTCAGCACATCT 840 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 TGACGCGGGTGAACCACAAGGTGGCGGTAGATTTCGAGTCTGTCTCCAATTTACCAGGCT 900 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 TCGACGCCAAGAAGCAAATCCCATGCATCGTGTCCATGCTGACCAAAGAGATGTATTTTT 960 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 CCTGAAGGAGGCCGTGCTAACGCCCAGCGGAAAGGCTCGATGTTGTGTTTGTGAATTATC 1020 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 GTAGATTAAGACAGAGTAAAGGTGTTCTACTCACATTTCAAACTAGGCATTATAAGGTTC 1080 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 TTCCTGTGTGGATTTTATTTTGAAAAGGAATCTTTTTTTTAAGCCTCTGCAGGGAAACTC 1140 consensus_2494#1 -------------------------------------------CCTCTGCAGGGAAACTC 17 ***************** consensus_2494#0 CTTTGTATTATTTTCAGTGCATGTTTTGAAGAATTTAGGAGCAATTAATCATGAAAAGGA 1200 consensus_2494#1 CTTTGTATTATTTTCAGTGCATGTTTTGAAGAATTTAGGAGCAATTAATCATGAAAAGGA 77 ************************************************************ consensus_2494#0 ATTTTTAGCTTCAACAAAGAGATCAGGTCTGGCAATAATGCACTTGTTTTTCTTTTTGTG 1260 consensus_2494#1 ATTTTTAGCTTCAACAAAGAGATCAGGTCTGGCAATAATGCACTTGTTTTTCTTTTTGTG 137 ************************************************************ consensus_2494#0 TTTTGGGACTGCATGTGTTTGAGCTTTAGCGGCATCGTGTGTTAAGAATTCTTTTTTATA 1320 consensus_2494#1 TTTTGGGACTGCATGTGTTTGAGCTTTAGCGGCATCGTGTGTTAAGAATTCTTTTTTATA 197 ************************************************************ consensus_2494#0 CTTCATGGTGCTTCAGGCTTCTTAGCACGTATGATTCATATGTGCCCACTTGTATGACGC 1380 consensus_2494#1 CTTCATGGTGCTTCAGGCTTCTTAGCACGTATGATTCATATGTGCCCACTTGTATGACGC 257 ************************************************************ consensus_2494#0 TGTCGTCTGTCAGTAGCTTGTGTGCTTCTGGTCTTTTTCTGTACAAAATGCCAGTTTTGA 1440 consensus_2494#1 TGTCGTCTGTCAGTAGCTTGTGTGC---------------------------AGTTTTGA 290 ************************* ******** consensus_2494#0 GTGCCTCTTCGCCGTCACTTGATACAGTCATTAATTAAACGTAACAGTCGACTTCACTCG 1500 consensus_2494#1 GTGCCTCTTCGCCGTCACTTGATACAGTCATTAATTAAACGTAACAGTCGACTTCACTCG 350 ************************************************************ consensus_2494#0 TAGATGATACAAAAGTTTATGTAACTCTCAGCGTTGCAATGGTGAACTTAGCAGCGCATA 1560 consensus_2494#1 TAGATGATACAAAAGTTTATGTAACTCTCAGCGTTGCAATGGTGAACTTAGCAGCGCATA 410 ************************************************************ consensus_2494#0 AGCTAAAATCACCTGTGCTGTCACGTCTCTGATGTTTTGCTGTTTGACAATCTGGCCAGA 1620 consensus_2494#1 AGCTAAAATCACCTGTGCTGTCACGTCTCTGATGTTTTGCTGTTTGACAATCTGGCCAGA 470 ************************************************************ consensus_2494#0 TGTGCAAACATTTGATACGAAGGTCAGCCTGGGACATTTTTGTAGTTTCACTATTTTGTA 1680 consensus_2494#1 TGTGCAAACATTTGATACGAAGGTCAGCCTGGGACATTTTTGTAGTTTCACTATTTTGTA 530 ************************************************************ consensus_2494#0 TTCTACTCTGTGAAGCTGGTCTGTTTTAAATAAAGACCACTTTTATT 1727 consensus_2494#1 TTCTACTCTGTGAAGCTGGTCTGTTTTAAATAAAGACCACTTT---- 573 ******************************************* |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |