These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [CGCTGAAGAGCATTACTACGGCTATGCTGGAGCCTTCAGGTGCCTTGTTGAGGGTGCCGGCGATGTCGCCTTCATCAAACACACCATCGTGAAGGAAAACAGCGATGGCAACGGTCCCGACTGGGCGAGAAACGTGAATTCTGCAGACTACGAGCTGATCTGTCCAAACAAGAGTCCAGTCCCCGTCACTGACTTTGCTTCCTGCCACCTGGCGATGGTGCCGGCACACGCTGTGGTGACGCGTCCCGAGAGCCGCGGTGATGTCGTGCGCATTCTGCAGGACCAGCAGGCTAAATTTGGGACCAAAGGCAGGGATGGTCGTTTCAAACTGTTCCAGTCCGAATCAGGAAAGAACCTCCTCTTCAAGGACTCTACCAAGTGTCTGCAGGAGATTCCTTTGGGAGAGTCCTTTGAAAAGTTCTTGGGAGCGGAATACATGACGGCCATGTCCTCACTCAGAGTGTGCACCGACAGTACTCCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGC] [+] EMBL CA330904 [CGCTGAAGAGCATTACTACGGCTATGCTGGAGCCTTCAGGTGCCTTGTTGAGGGTGCCGGCGATGTCGCCTTCATCAAACACACCATCGTGAAGGAAAACAGCGATGGCAACGGTCCCGACTGGGCGAGAAACGTGAATTCTGCAGACTACGAGCTGATCTGTCCAAACAAGAGTCCAGTCCCCGTCACTGACTTTGCTTCCTGCCACCTGGCGATGGTGCCGGCACACGCTGTGGTGACGCGTCCCGAGAGCCGCGGTGATGTCGTGCGCATTCTGCAGGACCAGCAGGCTAAATTTGGGACCAAAGGCAGGGATGGTCGTTTCAAACTGTTCCAGTCCGAATCAGGAAAGAACCTCCTCTTCAAGGACTCTACCAAGTGTCTGCAGGAGATTCCTTTGGGAGAGTCCTTTGAAAAGTTCTTGGGAGCGGAATACATGACGGCCATGTCCTCACTCAGAGTGTGCACCGACAGTACTCCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGC] consensusID : consensus_2499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 327 fasta sequence [GCACCGACAGTACTCCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGCTAGTGGTGATCGGCGCACGAGGGGCCTCCTTCAGGATTCAGGCGCCTTCCCAACACCTCCTTCACTTTTGCCAAAACTTGCTTTAAGCATTTTGTTACTGATTGTAGAGCTGATTAAAACAGCTCCAAACCCACAAATCAACTGTTCCAGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTACTTTTTCTCCCCA] [+] EMBL CA330100 [GCACCGACAGTACTCCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGCTAGTGGTGATCGGCGCACGAGGGGCCTCCTTCAGGATTCAGGCGCCTTCCCAACACCTCCTTCACTTTTGCCAAAACTTGCTTTAAGCATTTTGTTACTGATTGTAGAGCTGATTAAAACAGCTCCAAACCCACAAATCAACTGTTCCAGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTAn ] [+] EMBL CA333649 [ CAAAACTTGCTTTAAGCATTTTGTTACTGATTGTAGAGCTGATTAAAACAGCTCCAAACCCACAAATCAACTGTTCCAGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTAa ] [+] EMBL CA330060 [ CAACTGTTCCAGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTACTTTTTCTCCC ] [+] EMBL CA333601 [ GTTCCAGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTACTTTTTCTC ] [+] EMBL CA340939 [ AGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTACTTTTTCT ] [+] EMBL CA330913 [ AACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTACTTTTTCTCCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2499#0 CGCTGAAGAGCATTACTACGGCTATGCTGGAGCCTTCAGGTGCCTTGTTGAGGGTGCCGG 60 consensus_2499#1 ------------------------------------------------------------ consensus_2499#0 CGATGTCGCCTTCATCAAACACACCATCGTGAAGGAAAACAGCGATGGCAACGGTCCCGA 120 consensus_2499#1 -----------------------------------------GCACCGACAGTACTCCAGA 19 ** * ** *** ** consensus_2499#0 CTGGGCGAGAAACGTGAATTCTGCAGACTACGAGCTGATCTGTCCAAACAAGAGTCCAGT 180 consensus_2499#1 TCTGGAGAAAA--------TCTGCACGTTCCATTC----CTGTCAACAGAAGAG-CTAGT 66 ** ** ** ****** * * * ***** * * ***** * *** consensus_2499#0 CCCCGTCACTGACTTTGCTTCCTGCCACCTGGCGATGGTGCCGGCACA-CGCTGTGGTGA 239 consensus_2499#1 GGTGATCGGCGCACGAGGGGCCTCCTTCAGGATTCAGGCGCCTTCCCAACACCTCCTTCA 126 ** * * *** * * * ** *** * ** * * * * consensus_2499#0 CGCGTCCCGAGAGCCGCGGTGATGTCGTGCGCATTCTGCAGGACCAGCAGGCTAAATTTG 299 consensus_2499#1 CTTTTGCCAAAACTTGCTTTAA--GCATTTTGTTACTGATTGTAGAGCTGATTAAAAC-A 183 * * ** * * ** * * * * * *** * *** * **** consensus_2499#0 GGACCAAAGGCAGGGATGGTCGTTTCAAACTGTTCCAGTCCGAATCAGGAAAGAACCTCC 359 consensus_2499#1 GCTCCAAACCCACAAATC---------AACTGTTCCAGGCTGATTCCGGAGCCA--CTTC 232 * ***** ** ** *********** * ** ** *** * ** * consensus_2499#0 TCTTCAAGGACTCTACCAAGTGTCTGCAGGAGATTCCTTTGGGAGAGTCCTTTGAAA-AG 418 consensus_2499#1 TCAACAATGTTGTTAC-ATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAA 291 ** *** * *** * *** * * *** ** ** ** * *** * consensus_2499#0 TTCTTGGGAGCGGAATACATGACGGCCATGTCCTCACTCAGAGTGTGCACCGACAGTACT 478 consensus_2499#1 AACTTGGAGTCATGTTTTCTCTACTTTTTCTCCCCA------------------------ 327 ***** * * * * *** ** consensus_2499#0 CCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGC 526 consensus_2499#1 ------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |