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Takifugu rubripes
cluster # 2499 cluster # 2499       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2499#0 length = 526 sequences # 1  
consensus_2499#1 length = 327 sequences # 6  

consensusID : consensus_2499#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence
                              [CGCTGAAGAGCATTACTACGGCTATGCTGGAGCCTTCAGGTGCCTTGTTGAGGGTGCCGGCGATGTCGCCTTCATCAAACACACCATCGTGAAGGAAAACAGCGATGGCAACGGTCCCGACTGGGCGAGAAACGTGAATTCTGCAGACTACGAGCTGATCTGTCCAAACAAGAGTCCAGTCCCCGTCACTGACTTTGCTTCCTGCCACCTGGCGATGGTGCCGGCACACGCTGTGGTGACGCGTCCCGAGAGCCGCGGTGATGTCGTGCGCATTCTGCAGGACCAGCAGGCTAAATTTGGGACCAAAGGCAGGGATGGTCGTTTCAAACTGTTCCAGTCCGAATCAGGAAAGAACCTCCTCTTCAAGGACTCTACCAAGTGTCTGCAGGAGATTCCTTTGGGAGAGTCCTTTGAAAAGTTCTTGGGAGCGGAATACATGACGGCCATGTCCTCACTCAGAGTGTGCACCGACAGTACTCCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGC]

[+] EMBL CA330904             [CGCTGAAGAGCATTACTACGGCTATGCTGGAGCCTTCAGGTGCCTTGTTGAGGGTGCCGGCGATGTCGCCTTCATCAAACACACCATCGTGAAGGAAAACAGCGATGGCAACGGTCCCGACTGGGCGAGAAACGTGAATTCTGCAGACTACGAGCTGATCTGTCCAAACAAGAGTCCAGTCCCCGTCACTGACTTTGCTTCCTGCCACCTGGCGATGGTGCCGGCACACGCTGTGGTGACGCGTCCCGAGAGCCGCGGTGATGTCGTGCGCATTCTGCAGGACCAGCAGGCTAAATTTGGGACCAAAGGCAGGGATGGTCGTTTCAAACTGTTCCAGTCCGAATCAGGAAAGAACCTCCTCTTCAAGGACTCTACCAAGTGTCTGCAGGAGATTCCTTTGGGAGAGTCCTTTGAAAAGTTCTTGGGAGCGGAATACATGACGGCCATGTCCTCACTCAGAGTGTGCACCGACAGTACTCCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGC]


>consensus_2499#0 CGCTGAAGAGCATTACTACGGCTATGCTGGAGCCTTCAGGTGCCTTGTTGAGGGTGCCGG CGATGTCGCCTTCATCAAACACACCATCGTGAAGGAAAACAGCGATGGCAACGGTCCCGA CTGGGCGAGAAACGTGAATTCTGCAGACTACGAGCTGATCTGTCCAAACAAGAGTCCAGT CCCCGTCACTGACTTTGCTTCCTGCCACCTGGCGATGGTGCCGGCACACGCTGTGGTGAC GCGTCCCGAGAGCCGCGGTGATGTCGTGCGCATTCTGCAGGACCAGCAGGCTAAATTTGG GACCAAAGGCAGGGATGGTCGTTTCAAACTGTTCCAGTCCGAATCAGGAAAGAACCTCCT CTTCAAGGACTCTACCAAGTGTCTGCAGGAGATTCCTTTGGGAGAGTCCTTTGAAAAGTT CTTGGGAGCGGAATACATGACGGCCATGTCCTCACTCAGAGTGTGCACCGACAGTACTCC AGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGC



consensusID : consensus_2499#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 327
fasta sequence
                              [GCACCGACAGTACTCCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGCTAGTGGTGATCGGCGCACGAGGGGCCTCCTTCAGGATTCAGGCGCCTTCCCAACACCTCCTTCACTTTTGCCAAAACTTGCTTTAAGCATTTTGTTACTGATTGTAGAGCTGATTAAAACAGCTCCAAACCCACAAATCAACTGTTCCAGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTACTTTTTCTCCCCA]

[+] EMBL CA330100             [GCACCGACAGTACTCCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGCTAGTGGTGATCGGCGCACGAGGGGCCTCCTTCAGGATTCAGGCGCCTTCCCAACACCTCCTTCACTTTTGCCAAAACTTGCTTTAAGCATTTTGTTACTGATTGTAGAGCTGATTAAAACAGCTCCAAACCCACAAATCAACTGTTCCAGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTAn            ]
[+] EMBL CA333649             [                                                                                                                                     CAAAACTTGCTTTAAGCATTTTGTTACTGATTGTAGAGCTGATTAAAACAGCTCCAAACCCACAAATCAACTGTTCCAGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTAa            ]
[+] EMBL CA330060             [                                                                                                                                                                                                        CAACTGTTCCAGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTACTTTTTCTCCC  ]
[+] EMBL CA333601             [                                                                                                                                                                                                             GTTCCAGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTACTTTTTCTC    ]
[+] EMBL CA340939             [                                                                                                                                                                                                                  AGGCTGATTCCGGAGCCACTTCTCAACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTACTTTTTCT     ]
[+] EMBL CA330913             [                                                                                                                                                                                                                                          AACAATGTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAGTCATGTTTTCTCTACTTTTTCTCCCCA]


>consensus_2499#1 GCACCGACAGTACTCCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGA GCTAGTGGTGATCGGCGCACGAGGGGCCTCCTTCAGGATTCAGGCGCCTTCCCAACACCT CCTTCACTTTTGCCAAAACTTGCTTTAAGCATTTTGTTACTGATTGTAGAGCTGATTAAA ACAGCTCCAAACCCACAAATCAACTGTTCCAGGCTGATTCCGGAGCCACTTCTCAACAAT GTTGTTACATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAAAACTTGGAG TCATGTTTTCTCTACTTTTTCTCCCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2499#0      CGCTGAAGAGCATTACTACGGCTATGCTGGAGCCTTCAGGTGCCTTGTTGAGGGTGCCGG 60
consensus_2499#1      ------------------------------------------------------------
                                                                                  

consensus_2499#0      CGATGTCGCCTTCATCAAACACACCATCGTGAAGGAAAACAGCGATGGCAACGGTCCCGA 120
consensus_2499#1      -----------------------------------------GCACCGACAGTACTCCAGA 19
                                                               **   * **    *** **

consensus_2499#0      CTGGGCGAGAAACGTGAATTCTGCAGACTACGAGCTGATCTGTCCAAACAAGAGTCCAGT 180
consensus_2499#1      TCTGGAGAAAA--------TCTGCACGTTCCATTC----CTGTCAACAGAAGAG-CTAGT 66
                         ** ** **        ******   * *   *    ***** * * ***** * ***

consensus_2499#0      CCCCGTCACTGACTTTGCTTCCTGCCACCTGGCGATGGTGCCGGCACA-CGCTGTGGTGA 239
consensus_2499#1      GGTGATCGGCGCACGAGGGGCCTCCTTCAGGATTCAGGCGCCTTCCCAACACCTCCTTCA 126
                           **   *     *   *** *  *  *     ** ***  * ** * *     * *

consensus_2499#0      CGCGTCCCGAGAGCCGCGGTGATGTCGTGCGCATTCTGCAGGACCAGCAGGCTAAATTTG 299
consensus_2499#1      CTTTTGCCAAAACTTGCTTTAA--GCATTTTGTTACTGATTGTAGAGCTGATTAAAAC-A 183
                      *   * ** * *   **  * *   * *     * ***   *   *** *  ****    

consensus_2499#0      GGACCAAAGGCAGGGATGGTCGTTTCAAACTGTTCCAGTCCGAATCAGGAAAGAACCTCC 359
consensus_2499#1      GCTCCAAACCCACAAATC---------AACTGTTCCAGGCTGATTCCGGAGCCA--CTTC 232
                      *  *****  **   **          *********** * ** ** ***   *  ** *

consensus_2499#0      TCTTCAAGGACTCTACCAAGTGTCTGCAGGAGATTCCTTTGGGAGAGTCCTTTGAAA-AG 418
consensus_2499#1      TCAACAATGTTGTTAC-ATTTGTGTTATCTATATTTGCATGCCTGAATCTTCCCAAATAA 291
                      **  *** *    *** *  *** *     * ***    **   ** ** *   *** * 

consensus_2499#0      TTCTTGGGAGCGGAATACATGACGGCCATGTCCTCACTCAGAGTGTGCACCGACAGTACT 478
consensus_2499#1      AACTTGGAGTCATGTTTTCTCTACTTTTTCTCCCCA------------------------ 327
                        *****   *    *   *        * *** **                        

consensus_2499#0      CCAGATCTGGAGAAAATCTGCACGTTCCATTCCTGTCAACAGAAGAGC 526
consensus_2499#1      ------------------------------------------------
                                                                      




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)