These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2500#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 596 fasta sequence [GCCGAAGCGCTTTTTTTCAATTTTCAAAATGGCGAAACCACGCGTTTTCTTTGACATCGCGTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAAACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAGTGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTGGCAAAACCGCCGGCAAGGTTACCAACGCTGACTGTGGCCAACTGTAACTGTCCACCCCTGACAAGTAGGAAAAAGCACGGGCTGAGGGATTCCAATACTGTATAATTACGGGTTTATACA] [+] EMBL BU805825 [GCCGAAGCGCTTTTTTTCAATTTTCAAAATGGCGAAACCACGCGTTTTCTTTGACATCGCGTTTGATGGAGCTCCAGCTGGGAGAGTTGTAATGGAGCTTCACGCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTATGGGGAGAAGTTCGCTGATGAAAACTTCAAGTTGAAACATGTTACAGCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCGCAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTCGGCAATGTTGTGGAGGGATTGGATGTTGTCAAGAAGATGGAGGCAAAGGGCTCAAAAAGTGGCAAAACCACCGGCAAGGTTACCATCGCTGACTGTGGCCAACTGTAACTGTCCACCCCTGACCTATAGCACAAAGCACGGGCTGAGGGATTCCAATACTGTATAATTACGGGTTTATACA] [+] EMBL CA844697 [ TCAATTTTCAAAATGGCGAAACCACGCGTTTTCTTTGACATCGCGTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAAACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAGTGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTGG ] [+] EMBL CA844450 [ TCAATTTTCAAAATGGCGAAACCACGCGTTTTCTTTGAC CCTCGATTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAAACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAGTGTTGTGGAGGGATTAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTG ] [+] EMBL FR0057448 [ AATTTTCAAAATGGCGAAACCACGCGTTTTCTTTGACATCGCGTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAAACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAGTGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGG ] [+] EMBL FR0057963 [ TCAAAAAGGCGAAACCACGCGTTTTCTTTGACATCGCGTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAAACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAGTGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTGGCAAAACCGCCGGCAAGGTTACCAACGCTGACTGTGGCCAACTGTAACTGTTCACCCCTGACAAGTCTGAATAAGCctc ] consensusID : consensus_2500#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence [CGCGTTTTCTTTGACATCGCGTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAAACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAGTGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTGGCAAAACCGCCGGCAAGGTTACCATCGCTGACTGTGGCCAACTGTAACTGTCCACCCCTGGACATGTCTGAATATGCCTCCAGTTACATTTTCAAATGACTGCAT] [+] EMBL FR0057079 [CGCGTTTTCTTTGACATCGCGTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAATGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAAACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACAGTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAGTGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTGGCAAAACCGCCGGCAAGGTTACCATCGCTGACTGTGGCCAACTGTAACTGTCCACCCCTGGACATGTCTGAATATGCCTCCAGTTACATTTTCAAATGACTGCAT] [+] EMBL CA844514 [ ACATCGCGTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAAGACTGCCGAAAACTTCCGTGCATTGTGCACTGAAGAGAAGGGTTTTGGCTACAAGGGCTCCATATTTCATCGCATCATCCCCCGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2500#0 GCCGAAGCGCTTTTTTTCAATTTTCAAAATGGCGAAACCACGCGTTTTCTTTGACATCGC 60 consensus_2500#1 ----------------------------------------CGCGTTTTCTTTGACATCGC 20 ******************** consensus_2500#0 GTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAA 120 consensus_2500#1 GTTTGATGGAGCTCCAGCTGGGAGAATTATAATGGAGCTTCGCCCTGATGTGGTCCCAAA 80 ************************************************************ consensus_2500#0 GACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTC 180 consensus_2500#1 GACTGCCGAAAACTTCCGTGCATTGTGCACTGGAGAGAAGGGTTTTGGCTACAAGGGCTC 140 ************************************************************ consensus_2500#0 CATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAA 240 consensus_2500#1 CATATTTCATCGCATCATCCCCGGTTTCATGTGCCAGGGTGGAGACTTCACCCGCCATAA 200 ************************************************************ consensus_2500#0 TGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAA 300 consensus_2500#1 TGGTACTGGAGGCAAATCCATTTACGGGGAGAAGTTCGCTGATGAAAACTTCAGCTTGAA 260 ************************************************************ consensus_2500#0 ACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACA 360 consensus_2500#1 ACATCTTACACCTGGTACCCTGTCCATGGCCAATGCTGGTCCCAATACCAATGGATCACA 320 ************************************************************ consensus_2500#0 GTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAG 420 consensus_2500#1 GTTCTTCATCTGCACAGCCAAAACGTCCTGGTTGGATGGGAAGCATGTTGTGTTTGGCAG 380 ************************************************************ consensus_2500#0 TGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTGGCAA 480 consensus_2500#1 TGTTGTGGAGGGAATAGATGTTGTCAAGAAGATGGAGAAAAAGGGCTCAGAAGGTGGCAA 440 ************************************************************ consensus_2500#0 AACCGCCGGCAAGGTTACCAACGCTGACTGTGGCCAACTGTAACTGTCCACCCCTG-ACA 539 consensus_2500#1 AACCGCCGGCAAGGTTACCATCGCTGACTGTGGCCAACTGTAACTGTCCACCCCTGGACA 500 ******************** *********************************** *** consensus_2500#0 AGTAGGAAAAAGCACGGGCTGAGGGATTCCAAT-ACTGTATAATTACGGGTTTATACA 596 consensus_2500#1 TGTCTGAATATGCCTCCAGTTACATTTTCAAATGACTGCAT----------------- 541 ** *** * ** * * *** *** **** ** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |